Clone Name | rbasd27i08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, complete sequence Length = 174480 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 78016 ggctgtgatgtccaagaccaag 77995
>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete sequence Length = 180877 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 22411 ggctgtgatgtccaagaccaag 22432
>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence Length = 165158 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 3616 ggctgtgatgtccaagaccaag 3637
>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence Length = 175222 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 132680 ggctgtgatgtccaagaccaag 132701
>gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, complete sequence Length = 124457 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 105522 ggctgtgatgtccaagaccaag 105543
>gb|AC111200.7| Homo sapiens BAC clone RP11-1283H4 from 2, complete sequence Length = 186752 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 175768 ggctgtgatgtccaagaccaag 175747
>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence Length = 155702 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 71151 ggctgtgatgtccaagaccaag 71172
>gb|AC114755.4| Homo sapiens BAC clone RP11-274P16 from 2, complete sequence Length = 195403 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 137059 ggctgtgatgtccaagaccaag 137080
>gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, complete sequence Length = 156602 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 57796 ggctgtgatgtccaagaccaag 57775
>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence Length = 192494 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggctgtgatgtccaagaccaag 273 |||||||||||||||||||||| Sbjct: 105042 ggctgtgatgtccaagaccaag 105063
>emb|BX908778.5| Zebrafish DNA sequence from clone CH211-193E17 in linkage group 3, complete sequence Length = 138862 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 caagtagagaagaagcagagc 318 ||||||||||||||||||||| Sbjct: 51888 caagtagagaagaagcagagc 51908
>emb|CR387933.10| Zebrafish DNA sequence from clone DKEY-81L17 in linkage group 3, complete sequence Length = 182618 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 caagtagagaagaagcagagc 318 ||||||||||||||||||||| Sbjct: 125129 caagtagagaagaagcagagc 125109
>gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome 17, complete sequence Length = 178835 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 tttccttatgtttccactaaa 203 ||||||||||||||||||||| Sbjct: 61480 tttccttatgtttccactaaa 61500
>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence Length = 211272 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 tttccttatgtttccactaaa 203 ||||||||||||||||||||| Sbjct: 41711 tttccttatgtttccactaaa 41691
>ref|XM_445929.1| Candida glabrata CBS138, CAGL0E05522g partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gtgcatagcttcttcattca 148 |||||||||||||||||||| Sbjct: 843 gtgcatagcttcttcattca 824
>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32 Contains STSs and GSSs, complete sequence Length = 131238 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 actatgcaatcatataaaag 117 |||||||||||||||||||| Sbjct: 41845 actatgcaatcatataaaag 41864
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gtgcatagcttcttcattca 148 |||||||||||||||||||| Sbjct: 545353 gtgcatagcttcttcattca 545372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,384,191 Number of Sequences: 3902068 Number of extensions: 4384191 Number of successful extensions: 103950 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103920 Number of HSP's gapped (non-prelim): 30 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)