ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, comp... 44 0.32
2gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromo... 44 0.32
3gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complet... 44 0.32
4gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 44 0.32
5gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, comple... 44 0.32
6gb|AC111200.7| Homo sapiens BAC clone RP11-1283H4 from 2, comple... 44 0.32
7gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 44 0.32
8gb|AC114755.4| Homo sapiens BAC clone RP11-274P16 from 2, comple... 44 0.32
9gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, comple... 44 0.32
10gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, comple... 44 0.32
11emb|BX908778.5| Zebrafish DNA sequence from clone CH211-193E17 i... 42 1.2
12emb|CR387933.10| Zebrafish DNA sequence from clone DKEY-81L17 in... 42 1.2
13gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome... 42 1.2
14gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome... 42 1.2
15ref|XM_445929.1| Candida glabrata CBS138, CAGL0E05522g partial mRNA 40 4.9
16emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405... 40 4.9
17emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 4.9

>gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, complete sequence
          Length = 174480

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 252   ggctgtgatgtccaagaccaag 273
             ||||||||||||||||||||||
Sbjct: 78016 ggctgtgatgtccaagaccaag 77995



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>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete
             sequence
          Length = 180877

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 252   ggctgtgatgtccaagaccaag 273
             ||||||||||||||||||||||
Sbjct: 22411 ggctgtgatgtccaagaccaag 22432



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>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence
          Length = 165158

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 252  ggctgtgatgtccaagaccaag 273
            ||||||||||||||||||||||
Sbjct: 3616 ggctgtgatgtccaagaccaag 3637



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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 252    ggctgtgatgtccaagaccaag 273
              ||||||||||||||||||||||
Sbjct: 132680 ggctgtgatgtccaagaccaag 132701



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>gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, complete sequence
          Length = 124457

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 252    ggctgtgatgtccaagaccaag 273
              ||||||||||||||||||||||
Sbjct: 105522 ggctgtgatgtccaagaccaag 105543



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>gb|AC111200.7| Homo sapiens BAC clone RP11-1283H4 from 2, complete sequence
          Length = 186752

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 252    ggctgtgatgtccaagaccaag 273
              ||||||||||||||||||||||
Sbjct: 175768 ggctgtgatgtccaagaccaag 175747



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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 252   ggctgtgatgtccaagaccaag 273
             ||||||||||||||||||||||
Sbjct: 71151 ggctgtgatgtccaagaccaag 71172



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>gb|AC114755.4| Homo sapiens BAC clone RP11-274P16 from 2, complete sequence
          Length = 195403

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 252    ggctgtgatgtccaagaccaag 273
              ||||||||||||||||||||||
Sbjct: 137059 ggctgtgatgtccaagaccaag 137080



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>gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, complete sequence
          Length = 156602

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 252   ggctgtgatgtccaagaccaag 273
             ||||||||||||||||||||||
Sbjct: 57796 ggctgtgatgtccaagaccaag 57775



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>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence
          Length = 192494

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 252    ggctgtgatgtccaagaccaag 273
              ||||||||||||||||||||||
Sbjct: 105042 ggctgtgatgtccaagaccaag 105063



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>emb|BX908778.5| Zebrafish DNA sequence from clone CH211-193E17 in linkage group 3,
             complete sequence
          Length = 138862

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   caagtagagaagaagcagagc 318
             |||||||||||||||||||||
Sbjct: 51888 caagtagagaagaagcagagc 51908



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>emb|CR387933.10| Zebrafish DNA sequence from clone DKEY-81L17 in linkage group 3, complete
              sequence
          Length = 182618

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    caagtagagaagaagcagagc 318
              |||||||||||||||||||||
Sbjct: 125129 caagtagagaagaagcagagc 125109



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>gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome 17, complete sequence
          Length = 178835

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   tttccttatgtttccactaaa 203
             |||||||||||||||||||||
Sbjct: 61480 tttccttatgtttccactaaa 61500



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>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence
          Length = 211272

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   tttccttatgtttccactaaa 203
             |||||||||||||||||||||
Sbjct: 41711 tttccttatgtttccactaaa 41691



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>ref|XM_445929.1| Candida glabrata CBS138, CAGL0E05522g partial mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 gtgcatagcttcttcattca 148
           ||||||||||||||||||||
Sbjct: 843 gtgcatagcttcttcattca 824



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>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32
             Contains STSs and GSSs, complete sequence
          Length = 131238

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    actatgcaatcatataaaag 117
             ||||||||||||||||||||
Sbjct: 41845 actatgcaatcatataaaag 41864



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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    gtgcatagcttcttcattca 148
              ||||||||||||||||||||
Sbjct: 545353 gtgcatagcttcttcattca 545372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,384,191
Number of Sequences: 3902068
Number of extensions: 4384191
Number of successful extensions: 103950
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103920
Number of HSP's gapped (non-prelim): 30
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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