>ASCC1_MOUSE (Q9D8Z1) Activating signal cointegrator 1 complex subunit 1 (ASC-1|
           complex subunit p50) (Trip4 complex subunit p50)
          Length = 356

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
 Frame = -3

Query: 700 LWNKDRIAQASDVLQSISSQ-VNEALENRPISIQLKGLTCMKGSPARARVVYAPVLEIGG 524
           L ++  I Q  ++LQ    + +N+    RP+ +++ G+  M   PA   V+YA V    G
Sbjct: 186 LLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAKVHMKDG 245

Query: 523 EGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRHRKSKKSNGR---------- 374
             RL      + E F   GL+++      ++LHAT+MN   RK   + GR          
Sbjct: 246 SNRLQELVDRVLERFQSLGLIVKE--WTSVKLHATVMNTLLRKDPNAEGRYNLYTADGKY 303

Query: 373 ----NDYFDARSIFRQYGEQDWGEYPVPAVHLSQRFKFDEGGYYHCC 245
                + FD R+I + +    +G   + ++H+SQRF  D  G Y  C
Sbjct: 304 IFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVDSFGNYASC 350

>ASCC1_HUMAN (Q8N9N2) Activating signal cointegrator 1 complex subunit 1 (ASC-1|
           complex subunit p50) (Trip4 complex subunit p50)
          Length = 400

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
 Frame = -3

Query: 700 LWNKDRIAQASDVLQSISSQ-VNEALENRPISIQLKGLTCMKGSPARARVVYAPVLEIGG 524
           L +++ I Q  ++LQ    + +N+    +P+ +++ G+  M   P    V+YA V    G
Sbjct: 215 LLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDG 274

Query: 523 EGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRHRKSKKSNGRNDYFDA--RS 350
             RL      + E F  SGL+++      ++LHAT+MN   RK   + GR + + A  + 
Sbjct: 275 SNRLQELVDRVLERFQASGLIVKE--WNSVKLHATVMNTLFRKDPNAEGRYNLYTAEGKY 332

Query: 349 IFRQYGEQDWGEYPVPAVHLSQRFKFDEGGYYHC 248
           IF++    D G   + +  L  R ++++    HC
Sbjct: 333 IFKERESFD-GRNILKSFALLPRLEYNDAISAHC 365

>Y2157_ARCFU (O28125) Hypothetical UPF0097 protein AF2157|
          Length = 176

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 33/146 (22%), Positives = 59/146 (40%)
 Frame = -3

Query: 691 KDRIAQASDVLQSISSQVNEALENRPISIQLKGLTCMKGSPARARVVYAPVLEIGGEGRL 512
           ++++A+  + L  ++ Q        P  I  +G+     +P   RVV+  V E   EG L
Sbjct: 50  EEKLARIEERLSEVTFQ--------PFKISFEGVGAFP-NPGSPRVVWIGVKE---EGEL 97

Query: 511 VRACKVITEAFVKSGLVLERDARQELRLHATIMNVRHRKSKKSNGRNDYFDARSIFRQYG 332
            R    + E   K G   ++D     + H T+  V+ +  + ++          I R+Y 
Sbjct: 98  TRLANSVYEKLKKLGFRRDKD----FKAHLTVGRVKRKNPEVAD----------IVRKYS 143

Query: 331 EQDWGEYPVPAVHLSQRFKFDEGGYY 254
            + +GE  V    L Q     +G  Y
Sbjct: 144 SESFGEMEVRDFRLKQSILTPKGPIY 169

>AKA7G_HUMAN (Q9P0M2) A-kinase anchor protein 7 isoform gamma (Protein kinase|
           A-anchoring protein 7 isoform gamma) (A-kinase-anchoring
           protein 18)
          Length = 326

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
 Frame = -3

Query: 703 KLWNKDRIAQASDVLQSISSQVNEALENRPISIQLKGLTCMKGSPARARVVYAPVLEIGG 524
           +L N+D +    D L  +   + E L+ + +++  +G+          +V +  + E   
Sbjct: 112 QLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGN-----QVGFVKLAEGDH 166

Query: 523 EGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRHRKSKKSNGRNDYFDARSIF 344
              L+   +     F + G+++     +  + H T M +      + NG         ++
Sbjct: 167 VNSLLEIAETANRTFQEKGILVGES--RSFKPHLTFMKLSKSPWLRKNGVKKIDP--DLY 222

Query: 343 RQYGEQDWGEYPVPAVHLSQRFKFDEG-GYYHCCCSISLPE 224
            ++    +GE  +  + L    K  +  GYYHC  SI + E
Sbjct: 223 EKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSIVIGE 263

>BSH_DROME (Q04787) Brain-specific homeobox protein|
          Length = 427

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +1

Query: 67  HSHSPQAKPHAKTTDSMTARKTARIDLKGIRYCVKIEYCILLKHTELTPFEPPQARR-SS 243
           HSH PQ+ P A  + S TA  TAR +     Y  + +Y    K    TP     +R  +S
Sbjct: 103 HSHPPQSHPPASASASATA--TARSNQAASGYAGE-DYG---KSMHSTPRSNHHSRHGTS 156

Query: 244 NSNGSIHPRRT*TSVTGAPPVLGTRPNPVP 333
           + NG    ++  +     PPV  T+P P P
Sbjct: 157 HYNGDQISQQLGSGAAQHPPVPTTQPQPPP 186

>RL20_NEIMB (Q9K093) 50S ribosomal protein L20|
          Length = 119

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = -3

Query: 580 KGSPARARVVYAPVLEIGGEGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRH 401
           +G  ARAR      L  G  GR     +V  +A +K+G    RD RQ  R    +  VR 
Sbjct: 6   RGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRI 65

Query: 400 RKSKKSNG 377
               + NG
Sbjct: 66  NAGTRENG 73

>RL20_NEIMA (Q9JVA1) 50S ribosomal protein L20|
          Length = 119

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = -3

Query: 580 KGSPARARVVYAPVLEIGGEGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRH 401
           +G  ARAR      L  G  GR     +V  +A +K+G    RD RQ  R    +  VR 
Sbjct: 6   RGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRI 65

Query: 400 RKSKKSNG 377
               + NG
Sbjct: 66  NAGARENG 73

>YOR2_NEIGO (O33369) Hypothetical protein (ORF2) (Fragment)|
          Length = 417

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 33/141 (23%), Positives = 57/141 (40%)
 Frame = +2

Query: 113 P*RQERPRVSILRA*DTASRLNTAFC*NTRSSLRLSHLRQGDRATAMVVSTLVELEPL*Q 292
           P   +R   + + A +T S  NT      + +L     R   R + +V +    +E L  
Sbjct: 42  PAENDRMGDTRIAALETGSFKNTWQAIRPQLNLESGVFRHAVRLSLVVAAACTIVEAL-N 100

Query: 293 VHRRYWVLAPILFPVLPEYTPSIEIIVSSVRFLALPVAHIHYGCMQPQFLSGIPFKN*A* 472
           ++  YW+L   LF   P YT +   +   +   A  V  +  G + P F   +  K    
Sbjct: 101 LNLGYWILLTRLFVCQPNYTATKSRVYQRI---AGTVLGVIVGSLVPYFTPSVETKLWIV 157

Query: 473 LDEGFSYYLASSNKASFSTNF 535
           +     +++  + K SFST F
Sbjct: 158 IAGTTLFFMTRTYKYSFSTFF 178

>RL20_CHRVO (Q7NYC3) 50S ribosomal protein L20|
          Length = 119

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -3

Query: 580 KGSPARARVVYAPVLEIGGEGRLVRACKVITEAFVKSGLVLERDARQELRLHATIMNVRH 401
           +G  ARAR      L  G  GR     ++  +A +K+G    RD RQ+ R    +   R 
Sbjct: 6   RGVTARARHKKILALAKGYRGRRKNVYRIAKQAVMKAGQYAYRDRRQKKRQFRQLWIARI 65

Query: 400 RKSKKSNG 377
             + + NG
Sbjct: 66  NAAARENG 73

>NQO2_THET8 (Q56221) NADH-quinone oxidoreductase subunit 2 (EC 1.6.99.5) (NADH|
           dehydrogenase I chain 2) (NDH-1 subunit 2)
          Length = 180

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = +1

Query: 223 PQARRSSNSNGSIHPRRT*TSVTGAPPVLGTRPNPVPRIA*IYSEHR-------NNRFFR 381
           P  RR     G I P R    +     ++GT P  V  +A  YS ++       + +   
Sbjct: 28  PLLRRVQQEEGWIRPER----IEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCA 83

Query: 382 SISCSSCGAHSLWLHATSIL 441
           ++SC   GA  LW + T  L
Sbjct: 84  TLSCKLAGAEELWDYLTETL 103

>ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497|
          Length = 498

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 60  ECPQPQPTSKATRQNYRFHDGKKDRAYRS*GHKILRQD*ILHSVETH 200
           EC +    S    Q+ R H G+K  A R  G     Q  ++H  ETH
Sbjct: 138 ECGKAFAWSSNLSQHQRIHSGEKPYACRECGKAFRAQSQLIHHQETH 184

>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/117 (20%), Positives = 47/117 (40%)
 Frame = -3

Query: 658  QSISSQVNEALENRPISIQLKGLTCMKGSPARARVVYAPVLEIGGEGRLVRACKVITEAF 479
            Q +S+     L  RP++ + +  T +   P    V+  P  +    G + +A K+ ++  
Sbjct: 2459 QPLSATSRPQLPERPLAPEARPKTVVGTGPPAKPVLVRPTPQSWAPGSVAKAPKIPSKPV 2518

Query: 478  VKSGLVLERDARQELRLHATIMNVRHRKSKKSNGRNDYFDARSIFRQYGEQDWGEYP 308
                 +L +D      + A+   VR+      +        RSI +QY +  W  +P
Sbjct: 2519 AVP--ILAQDWTAPESISASPELVRYSTLNSEHFPQPTQQIRSIIKQYKQPPWAGHP 2573

>FLHA_HELPJ (Q9ZM40) Flagellar biosynthesis protein flhA|
          Length = 733

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 73  HSPQAKPHAKTTDSMTARKTARIDLKGIRYCVKIEY 180
           HS + KPHA TT + T  +  R + + I   +KIE+
Sbjct: 362 HSSKIKPHAPTTKTKTPEEIKREEEQAIDEVLKIEF 397

>Y4186_STRCO (Q9K4F4) UPF0256 protein SCO4186|
          Length = 418

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 596 GPDMHERLTS*GPGCICSSTGNWWR 522
           GP++HERL    PG + S T  WWR
Sbjct: 176 GPELHERLRRAQPGAV-SRTELWWR 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,168,957
Number of Sequences: 219361
Number of extensions: 2677760
Number of successful extensions: 7797
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7788
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)