No.
Definition
Score (bits)
E Value
1 dbj|AK073280.1| Oryza sativa (japonica cultivar-group) cDNA clon...
325
1e-85
2 ref|NM_188623.1| Oryza sativa (japonica cultivar-group), Ozsa822...
248
2e-62
3 ref|NM_188622.1| Oryza sativa (japonica cultivar-group), Ozsa822...
100
1e-17
4 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
100
1e-17
5 dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D...
100
1e-17
6 dbj|AK062918.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
1e-17
7 gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete se...
44
0.62
8 gb|AY111586.1| Zea mays CL24288_1 mRNA sequence
44
0.62
9 gb|AY460538.1| Ossaea robusta 18S ribosomal RNA gene, partial se...
42
2.4
10 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.4
11 dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.4
12 ref|XM_470109.1| Oryza sativa (japonica cultivar-group), mRNA
40
9.7
13 gb|CP000081.1| Leishmania major chromosome 35, complete sequence
40
9.7
14 gb|AC138232.10| Mus musculus chromosome 1, clone RP23-39C19, com...
40
9.7
15 ref|XM_604060.2| PREDICTED: Bos taurus similar to Rab proteins g...
40
9.7
16 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
9.7
17 ref|XM_546835.2| PREDICTED: Canis familiaris similar to fucokina...
40
9.7
18 gb|AC010126.3| Homo sapiens BAC clone GS1-502B2 from 7, complete...
40
9.7
19 emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chro...
40
9.7
20 emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 o...
40
9.7
21 gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Ca...
40
9.7
22 emb|BX548028.5| Zebrafish DNA sequence from clone CH211-260H24 i...
40
9.7
23 emb|BX511202.3|RN217N9 Rattus norvegicus chromosome 1 BAC RP32-2...
40
9.7
24 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.7
25 gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom...
40
9.7
26 dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.7
27 emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-9...
40
9.7
28 emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8...
40
9.7
29 dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
9.7
30 emb|AL606501.6| Human DNA sequence from clone RP11-806J21 on chr...
40
9.7
31 emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2...
40
9.7
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 99.6 bits (50), Expect = 1e-17
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
|||||||| ||| |||||| |||||| || ||||||||||| |||| |||||||||||||
Sbjct: 7291689 aggcgtccctcttcaccaacttccagcacaggagcatatactaccctggccctagctggt 7291630
Query: 573 gagcctttcatgcatgtc 590
||||||||||||||||||
Sbjct: 7291629 gagcctttcatgcatgtc 7291612
Score = 73.8 bits (37), Expect = 7e-10
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 433 tcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcagtta 492
|||||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 7292235 tcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcagtta 7292176
Query: 493 t 493
|
Sbjct: 7292175 t 7292175
Score = 71.9 bits (36), Expect = 3e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
|||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 7283233 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 7283174
Query: 573 gagcctttcatgcatg 588
||||||||||||||||
Sbjct: 7283173 gagcctttcatgcatg 7283158
Score = 65.9 bits (33), Expect = 2e-07
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 598 taagttgtatggagataggtcggttttccaatgcttcatttacctgggaagatattgact 657
|||||||||||||||| |||||||||||||| ||||| |||| ||||| |||| |||||
Sbjct: 7291387 taagttgtatggagattggtcggttttccaaggcttccattacttgggacgatactgact 7291328
Query: 658 g 658
|
Sbjct: 7291327 g 7291327
Score = 50.1 bits (25), Expect = 0.010
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 310 ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
|||| |||||||| || |||||||| |||| ||||| ||| ||||||||||||| | |
Sbjct: 7292781 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 7292722
Query: 370 cgtttcttccgttcgatttcttgct 394
|||||||| |||| || |||||||
Sbjct: 7292721 cgtttctttggttccatctcttgct 7292697
Score = 44.1 bits (22), Expect = 0.62
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 656 ctggaggacatcagaagcctgggctatacgatccttattcca 697
|||||| ||||||||||||| || || ||||||||||||||
Sbjct: 7291249 ctggagcacatcagaagccttagcaatgcgatccttattcca 7291208
Score = 42.1 bits (21), Expect = 2.4
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 393 ctcttcctgtggcgcacattcattatggt 421
||||||||||| | |||||||||||||||
Sbjct: 7292622 ctcttcctgtgcctcacattcattatggt 7292594
Score = 42.1 bits (21), Expect = 2.4
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 598 taagttgtatggagataggtcggttttccaatgcttc 634
|||| |||||||||||||||| ||||| ||| |||||
Sbjct: 7282740 taagctgtatggagataggtctgtttttcaaggcttc 7282704
>dbj|AP001550.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0431F01
Length = 143209
Score = 99.6 bits (50), Expect = 1e-17
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
|||||||| ||| |||||| |||||| || ||||||||||| |||| |||||||||||||
Sbjct: 93119 aggcgtccctcttcaccaacttccagcacaggagcatatactaccctggccctagctggt 93060
Query: 573 gagcctttcatgcatgtc 590
||||||||||||||||||
Sbjct: 93059 gagcctttcatgcatgtc 93042
Score = 73.8 bits (37), Expect = 7e-10
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 433 tcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcagtta 492
|||||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 93665 tcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcagtta 93606
Query: 493 t 493
|
Sbjct: 93605 t 93605
Score = 71.9 bits (36), Expect = 3e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
|||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 84663 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 84604
Query: 573 gagcctttcatgcatg 588
||||||||||||||||
Sbjct: 84603 gagcctttcatgcatg 84588
Score = 65.9 bits (33), Expect = 2e-07
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 598 taagttgtatggagataggtcggttttccaatgcttcatttacctgggaagatattgact 657
|||||||||||||||| |||||||||||||| ||||| |||| ||||| |||| |||||
Sbjct: 92817 taagttgtatggagattggtcggttttccaaggcttccattacttgggacgatactgact 92758
Query: 658 g 658
|
Sbjct: 92757 g 92757
Score = 50.1 bits (25), Expect = 0.010
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 310 ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
|||| |||||||| || |||||||| |||| ||||| ||| ||||||||||||| | |
Sbjct: 94211 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 94152
Query: 370 cgtttcttccgttcgatttcttgct 394
|||||||| |||| || |||||||
Sbjct: 94151 cgtttctttggttccatctcttgct 94127
Score = 44.1 bits (22), Expect = 0.62
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 656 ctggaggacatcagaagcctgggctatacgatccttattcca 697
|||||| ||||||||||||| || || ||||||||||||||
Sbjct: 92679 ctggagcacatcagaagccttagcaatgcgatccttattcca 92638
Score = 42.1 bits (21), Expect = 2.4
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 393 ctcttcctgtggcgcacattcattatggt 421
||||||||||| | |||||||||||||||
Sbjct: 94052 ctcttcctgtgcctcacattcattatggt 94024
Score = 42.1 bits (21), Expect = 2.4
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 598 taagttgtatggagataggtcggttttccaatgcttc 634
|||| |||||||||||||||| ||||| ||| |||||
Sbjct: 84170 taagctgtatggagataggtctgtttttcaaggcttc 84134
>gb|AY460538.1 | Ossaea robusta 18S ribosomal RNA gene, partial sequence; internal
transcribed spacer 1, 5.8S ribosomal RNA gene, and
internal transcribed spacer 2, complete sequence; and
26S ribosomal RNA gene, partial sequence
Length = 703
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 369 tcgtttcttccgttcgatttc 389
|||||||||||||||||||||
Sbjct: 48 tcgtttcttccgttcgatttc 28
>emb|AL022165.1 |HS71L16 Human DNA sequence from clone RP1-71L16 on chromosome Xp11 Contains a
pseudogene similar to part of novel gene (FLJ20344), a
novel gene, the CHST7 gene for carbohydrate
(N-acetylglucosamine 6-O) ulfotransferase 7 (C6ST-2), the
3' end of the SLC9A7 gene for solute carrier family 9
(sodium/hydrogen exchanger), isoform 7 (NHE7), a pseudogene
similar to part of germ cell specific Y-box binding protein
(YBX2) and two CpG islands, complete sequence
Length = 176433
Score = 40.1 bits (20), Expect = 9.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 gcaacctcaattcttgtctg 446
||||||||||||||||||||
Sbjct: 112029 gcaacctcaattcttgtctg 112048
>emb|AL359682.4 |CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 116067
Score = 40.1 bits (20), Expect = 9.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 64 gcccacagccacagcccaca 83
||||||||||||||||||||
Sbjct: 90131 gcccacagccacagcccaca 90112
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,048,075
Number of Sequences: 3902068
Number of extensions: 5048075
Number of successful extensions: 94195
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93931
Number of HSP's gapped (non-prelim): 262
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)