ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27h23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 1e-85
2ref|NM_188623.1| Oryza sativa (japonica cultivar-group), Ozsa822... 248 2e-62
3ref|NM_188622.1| Oryza sativa (japonica cultivar-group), Ozsa822... 100 1e-17
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
5dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
6dbj|AK062918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
7gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete se... 44 0.62
8gb|AY111586.1| Zea mays CL24288_1 mRNA sequence 44 0.62
9gb|AY460538.1| Ossaea robusta 18S ribosomal RNA gene, partial se... 42 2.4
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
11dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
12ref|XM_470109.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.7
13gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 9.7
14gb|AC138232.10| Mus musculus chromosome 1, clone RP23-39C19, com... 40 9.7
15ref|XM_604060.2| PREDICTED: Bos taurus similar to Rab proteins g... 40 9.7
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.7
17ref|XM_546835.2| PREDICTED: Canis familiaris similar to fucokina... 40 9.7
18gb|AC010126.3| Homo sapiens BAC clone GS1-502B2 from 7, complete... 40 9.7
19emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chro... 40 9.7
20emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 o... 40 9.7
21gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Ca... 40 9.7
22emb|BX548028.5| Zebrafish DNA sequence from clone CH211-260H24 i... 40 9.7
23emb|BX511202.3|RN217N9 Rattus norvegicus chromosome 1 BAC RP32-2... 40 9.7
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
25gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 9.7
26dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.7
27emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-9... 40 9.7
28emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8... 40 9.7
29dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.7
30emb|AL606501.6| Human DNA sequence from clone RP11-806J21 on chr... 40 9.7
31emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 9.7

>dbj|AK073280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025F17, full
            insert sequence
          Length = 1819

 Score =  325 bits (164), Expect = 1e-85
 Identities = 332/388 (85%)
 Strand = Plus / Minus

                                                                        
Query: 310  ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
            |||| |||||||| || |||||||| ||||  ||||| ||| |||||||||||||  | |
Sbjct: 1391 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 1332

                                                                        
Query: 370  cgtttcttccgttcgatttcttgctcttcctgtggcgcacattcattatggttgcatgca 429
            ||||||||  |||| || |||||||||||||||| | |||||||||||||||  | ||||
Sbjct: 1331 cgtttctttggttccatctcttgctcttcctgtgcctcacattcattatggtcacgtgca 1272

                                                                        
Query: 430  acctcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcag 489
            || |||||||||| || |||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 1271 acttcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcag 1212

                                                                        
Query: 490  ttattaccttgcaagctcgaacaaggcgtccttctccaccaatttccagtactggagcat 549
            |||| || |||||||| ||    |||||||| ||| |||||| |||||| || |||||||
Sbjct: 1211 ttataactttgcaagcacgttgtaggcgtccctcttcaccaacttccagcacaggagcat 1152

                                                                        
Query: 550  atacaacccgggccctagctggtgagcctttcatgcatgtcaggcccttaagttgtatgg 609
            |||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||
Sbjct: 1151 atactaccctggccctagctggtgagcctttcatgcatgtcagacctctaagttgtatgg 1092

                                                                        
Query: 610  agataggtcggttttccaatgcttcatttacctgggaagatattgactggaggacatcag 669
            |||| |||||||||||||| |||||  |||| ||||| |||| ||||||||| |||||||
Sbjct: 1091 agattggtcggttttccaaggcttccattacttgggacgatactgactggagcacatcag 1032

                                        
Query: 670  aagcctgggctatacgatccttattcca 697
            ||||||  || || ||||||||||||||
Sbjct: 1031 aagccttagcaatgcgatccttattcca 1004



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>ref|NM_188623.1| Oryza sativa (japonica cultivar-group), Ozsa8226 predicted mRNA
          Length = 633

 Score =  248 bits (125), Expect = 2e-62
 Identities = 230/265 (86%)
 Strand = Plus / Minus

                                                                       
Query: 433 tcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcagtta 492
           |||||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 361 tcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcagtta 302

                                                                       
Query: 493 ttaccttgcaagctcgaacaaggcgtccttctccaccaatttccagtactggagcatata 552
           | || |||||||| ||    |||||||| ||| |||||| |||||| || ||||||||||
Sbjct: 301 taactttgcaagcacgttgtaggcgtccctcttcaccaacttccagcacaggagcatata 242

                                                                       
Query: 553 caacccgggccctagctggtgagcctttcatgcatgtcaggcccttaagttgtatggaga 612
           | |||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||||
Sbjct: 241 ctaccctggccctagctggtgagcctttcatgcatgtcagacctctaagttgtatggaga 182

                                                                       
Query: 613 taggtcggttttccaatgcttcatttacctgggaagatattgactggaggacatcagaag 672
           | |||||||||||||| |||||  |||| ||||| |||| ||||||||| ||||||||||
Sbjct: 181 ttggtcggttttccaaggcttccattacttgggacgatactgactggagcacatcagaag 122

                                    
Query: 673 cctgggctatacgatccttattcca 697
           |||  || || ||||||||||||||
Sbjct: 121 ccttagcaatgcgatccttattcca 97



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                       
Query: 310 ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
           |||| |||||||| || |||||||| ||||  ||||| ||| |||||||||||||  | |
Sbjct: 526 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 467

                                                               
Query: 370 cgtttcttccgttcgatttcttgctcttcctgtggcgcacattcattatggt 421
           ||||||||  |||| || |||||||||||||||| | |||||||||||||||
Sbjct: 466 cgtttctttggttccatctcttgctcttcctgtgcctcacattcattatggt 415



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>ref|NM_188622.1| Oryza sativa (japonica cultivar-group), Ozsa8225 predicted mRNA
          Length = 555

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                       
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
           |||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 194 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 135

                                                                       
Query: 573 gagcctttcatgcatgtcaggcccttaagttgtatggagataggtcggttttccaatgct 632
           |||||||||||||||| ||| ||  |||| |||||||||||||||| ||||| ||| |||
Sbjct: 134 gagcctttcatgcatgccagacctctaagctgtatggagataggtctgtttttcaaggct 75

             
Query: 633 tc 634
           ||
Sbjct: 74  tc 73



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                           
Query: 513     aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
               |||||||| ||| |||||| |||||| || ||||||||||| |||| |||||||||||||
Sbjct: 7291689 aggcgtccctcttcaccaacttccagcacaggagcatatactaccctggccctagctggt 7291630

                                 
Query: 573     gagcctttcatgcatgtc 590
               ||||||||||||||||||
Sbjct: 7291629 gagcctttcatgcatgtc 7291612



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 433     tcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcagtta 492
               |||||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 7292235 tcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcagtta 7292176

                
Query: 493     t 493
               |
Sbjct: 7292175 t 7292175



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                           
Query: 513     aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
               |||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 7283233 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 7283174

                               
Query: 573     gagcctttcatgcatg 588
               ||||||||||||||||
Sbjct: 7283173 gagcctttcatgcatg 7283158



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                           
Query: 598     taagttgtatggagataggtcggttttccaatgcttcatttacctgggaagatattgact 657
               |||||||||||||||| |||||||||||||| |||||  |||| ||||| |||| |||||
Sbjct: 7291387 taagttgtatggagattggtcggttttccaaggcttccattacttgggacgatactgact 7291328

                
Query: 658     g 658
               |
Sbjct: 7291327 g 7291327



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                           
Query: 310     ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
               |||| |||||||| || |||||||| ||||  ||||| ||| |||||||||||||  | |
Sbjct: 7292781 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 7292722

                                        
Query: 370     cgtttcttccgttcgatttcttgct 394
               ||||||||  |||| || |||||||
Sbjct: 7292721 cgtttctttggttccatctcttgct 7292697



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                         
Query: 656     ctggaggacatcagaagcctgggctatacgatccttattcca 697
               |||||| |||||||||||||  || || ||||||||||||||
Sbjct: 7291249 ctggagcacatcagaagccttagcaatgcgatccttattcca 7291208



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 393     ctcttcctgtggcgcacattcattatggt 421
               ||||||||||| | |||||||||||||||
Sbjct: 7292622 ctcttcctgtgcctcacattcattatggt 7292594



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 598     taagttgtatggagataggtcggttttccaatgcttc 634
               |||| |||||||||||||||| ||||| ||| |||||
Sbjct: 7282740 taagctgtatggagataggtctgtttttcaaggcttc 7282704



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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                         
Query: 513   aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
             |||||||| ||| |||||| |||||| || ||||||||||| |||| |||||||||||||
Sbjct: 93119 aggcgtccctcttcaccaacttccagcacaggagcatatactaccctggccctagctggt 93060

                               
Query: 573   gagcctttcatgcatgtc 590
             ||||||||||||||||||
Sbjct: 93059 gagcctttcatgcatgtc 93042



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 433   tcaattcttgtctggcatccctttcaagaactaggcctgacttgacgaaggcttcagtta 492
             |||||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 93665 tcaattcttgcctcgcatccctttcaagtactaggcccgacttgacaaaggcatcagtta 93606

              
Query: 493   t 493
             |
Sbjct: 93605 t 93605



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 513   aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
             |||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 84663 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 84604

                             
Query: 573   gagcctttcatgcatg 588
             ||||||||||||||||
Sbjct: 84603 gagcctttcatgcatg 84588



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 598   taagttgtatggagataggtcggttttccaatgcttcatttacctgggaagatattgact 657
             |||||||||||||||| |||||||||||||| |||||  |||| ||||| |||| |||||
Sbjct: 92817 taagttgtatggagattggtcggttttccaaggcttccattacttgggacgatactgact 92758

              
Query: 658   g 658
             |
Sbjct: 92757 g 92757



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                         
Query: 310   ggtactcgccccaatcctgttccccgtattgcctgaatatactccgagcatcgaaataat 369
             |||| |||||||| || |||||||| ||||  ||||| ||| |||||||||||||  | |
Sbjct: 94211 ggtattcgccccagtcatgttccccatattttctgaaaatattccgagcatcgaatgagt 94152

                                      
Query: 370   cgtttcttccgttcgatttcttgct 394
             ||||||||  |||| || |||||||
Sbjct: 94151 cgtttctttggttccatctcttgct 94127



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 656   ctggaggacatcagaagcctgggctatacgatccttattcca 697
             |||||| |||||||||||||  || || ||||||||||||||
Sbjct: 92679 ctggagcacatcagaagccttagcaatgcgatccttattcca 92638



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 393   ctcttcctgtggcgcacattcattatggt 421
             ||||||||||| | |||||||||||||||
Sbjct: 94052 ctcttcctgtgcctcacattcattatggt 94024



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 598   taagttgtatggagataggtcggttttccaatgcttc 634
             |||| |||||||||||||||| ||||| ||| |||||
Sbjct: 84170 taagctgtatggagataggtctgtttttcaaggcttc 84134



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>dbj|AK062918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H04, full
           insert sequence
          Length = 1080

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                       
Query: 513 aggcgtccttctccaccaatttccagtactggagcatatacaacccgggccctagctggt 572
           |||||||| | | |||||| |||||| || ||||||||||| |||| |||| || |||||
Sbjct: 416 aggcgtccctgttcaccaacttccagcacaggagcatatactacccaggccttatctggt 357

                                                                       
Query: 573 gagcctttcatgcatgtcaggcccttaagttgtatggagataggtcggttttccaatgct 632
           |||||||||||||||| ||| ||  |||| |||||||||||||||| ||||| ||| |||
Sbjct: 356 gagcctttcatgcatgccagacctctaagctgtatggagataggtctgtttttcaaggct 297

             
Query: 633 tc 634
           ||
Sbjct: 296 tc 295



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>gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete sequence
          Length = 116909

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 449   atccctttcaagaactaggcct 470
             ||||||||||||||||||||||
Sbjct: 93226 atccctttcaagaactaggcct 93205



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>gb|AY111586.1| Zea mays CL24288_1 mRNA sequence
          Length = 526

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 391 tgctcttcctgtggcgcacattcattatggttgcatgcaacctcaattct 440
           ||||||||||||| ||||| ||||||| ||| || |||||| ||| ||||
Sbjct: 441 tgctcttcctgtgccgcacgttcattacggtcgcgtgcaacttcagttct 490



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>gb|AY460538.1| Ossaea robusta 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 703

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 369 tcgtttcttccgttcgatttc 389
           |||||||||||||||||||||
Sbjct: 48  tcgtttcttccgttcgatttc 28



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 67       cacagccacagcccacaagca 87
                |||||||||||||||||||||
Sbjct: 29053657 cacagccacagcccacaagca 29053637



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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0724B10
          Length = 169143

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    cacagccacagcccacaagca 87
             |||||||||||||||||||||
Sbjct: 99822 cacagccacagcccacaagca 99802



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>ref|XM_470109.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  ggtgcaccgccggtactggg 311
            ||||||||||||||||||||
Sbjct: 1284 ggtgcaccgccggtactggg 1303



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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 111     ttccatgacggcaagaaaga 130
               ||||||||||||||||||||
Sbjct: 1231770 ttccatgacggcaagaaaga 1231789



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>gb|AC138232.10| Mus musculus chromosome 1, clone RP23-39C19, complete sequence
          Length = 199733

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ccagggatgccaccactcat 50
             ||||||||||||||||||||
Sbjct: 92554 ccagggatgccaccactcat 92573



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>ref|XM_604060.2| PREDICTED: Bos taurus similar to Rab proteins
           geranylgeranyltransferase component A 1 (Rab escort
           protein 1) (REP-1) (Choroideraemia protein) (TCD
           protein) (LOC525705), mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 572 tgagcctttcatgcatgtca 591
           ||||||||||||||||||||
Sbjct: 342 tgagcctttcatgcatgtca 323



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 292      ggtgcaccgccggtactggg 311
                ||||||||||||||||||||
Sbjct: 33986229 ggtgcaccgccggtactggg 33986210



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>ref|XM_546835.2| PREDICTED: Canis familiaris similar to fucokinase (LOC489715), mRNA
          Length = 3240

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cgtgcagaatgcccacagcc 73
            ||||||||||||||||||||
Sbjct: 2868 cgtgcagaatgcccacagcc 2887



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>gb|AC010126.3| Homo sapiens BAC clone GS1-502B2 from 7, complete sequence
          Length = 56163

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   tcttgtctggcatccctttc 457
             ||||||||||||||||||||
Sbjct: 44751 tcttgtctggcatccctttc 44732



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>emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 142067

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    tatggttgcatgcaacctca 435
              ||||||||||||||||||||
Sbjct: 139206 tatggttgcatgcaacctca 139187



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>emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 on chromosome Xp11 Contains a
              pseudogene similar to part of novel gene (FLJ20344), a
              novel gene, the CHST7 gene for carbohydrate
              (N-acetylglucosamine 6-O) ulfotransferase 7 (C6ST-2), the
              3' end of the SLC9A7 gene for solute carrier family 9
              (sodium/hydrogen exchanger), isoform 7 (NHE7), a pseudogene
              similar to part of germ cell specific Y-box binding protein
              (YBX2) and two CpG islands, complete sequence
          Length = 176433

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    gcaacctcaattcttgtctg 446
              ||||||||||||||||||||
Sbjct: 112029 gcaacctcaattcttgtctg 112048



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>gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 127018

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   aattcttgtctggcatccct 454
             ||||||||||||||||||||
Sbjct: 97407 aattcttgtctggcatccct 97388



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>emb|BX548028.5| Zebrafish DNA sequence from clone CH211-260H24 in linkage group 12,
              complete sequence
          Length = 157392

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cattctgttgaaacacacgg 202
              ||||||||||||||||||||
Sbjct: 140474 cattctgttgaaacacacgg 140455



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>emb|BX511202.3|RN217N9 Rattus norvegicus chromosome 1 BAC RP32-217N9, complete sequence
          Length = 178012

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ccagggatgccaccactcat 50
             ||||||||||||||||||||
Sbjct: 15917 ccagggatgccaccactcat 15936



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 292      ggtgcaccgccggtactggg 311
                ||||||||||||||||||||
Sbjct: 34076701 ggtgcaccgccggtactggg 34076682



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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ggtgcaccgccggtactggg 311
             ||||||||||||||||||||
Sbjct: 71462 ggtgcaccgccggtactggg 71481



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>dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full
            insert sequence
          Length = 1616

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  ggtgcaccgccggtactggg 311
            ||||||||||||||||||||
Sbjct: 1360 ggtgcaccgccggtactggg 1379



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>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 228652

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggcaaggagatcgagcaacagcaa 251
              |||||||| |||||||||||||||
Sbjct: 185638 ggcaaggatatcgagcaacagcaa 185661



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>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166894

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    gcccacagccacagcccaca 83
             ||||||||||||||||||||
Sbjct: 30686 gcccacagccacagcccaca 30667



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>dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-629D8, complete
             sequence
          Length = 134743

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   tgcaacctcaattcttgtct 445
             ||||||||||||||||||||
Sbjct: 76034 tgcaacctcaattcttgtct 76015



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>emb|AL606501.6| Human DNA sequence from clone RP11-806J21 on chromosome 1, complete
             sequence
          Length = 48610

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   tatggttgcatgcaacctca 435
             ||||||||||||||||||||
Sbjct: 45749 tatggttgcatgcaacctca 45730



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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    gcccacagccacagcccaca 83
             ||||||||||||||||||||
Sbjct: 90131 gcccacagccacagcccaca 90112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,048,075
Number of Sequences: 3902068
Number of extensions: 5048075
Number of successful extensions: 94195
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93931
Number of HSP's gapped (non-prelim): 262
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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