Clone Name | rbasd27h18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464006.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2195 Score = 278 bits (140), Expect = 2e-71 Identities = 245/280 (87%) Strand = Plus / Minus Query: 409 ctaggacaccttgtgcgagatttttatgtagttcatgagccttctcagagcattaccgct 468 ||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 1819 ctaggacactttgtgcgagatttttatgtaattcatgagcctgctcagggctttaccgct 1760 Query: 469 gtcgatggcttcccttgccctgtcaagcgcggagttgatatcctgagctccactgcagcc 528 ||| |||||||| |||||||||||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 1759 gtcaatggcttctcttgccctgtcaagtgcggacttgatatcctcagctccagtgcagcc 1700 Query: 529 taacaagtggtcagccatagcggcgttaagaactattcggtcataagcgggccctttgtc 588 ||| | ||||||| |||| || || || || ||||||| |||||| || || ||||| || Sbjct: 1699 taagaggtggtcaaccatggcagcatttaggactattctgtcataggctggtcctttctc 1640 Query: 589 tccacccagtgctgacaaacccagctccaagtttttcagtactgatttatcagttcttgg 648 |||| ||| |||| |||||||| ||||||||||||||| |||||| ||||||||| ||| Sbjct: 1639 cccactcagcgctgccaaacccaactccaagtttttcaggactgatctatcagttcgtgg 1580 Query: 649 agtttcagtggatttgaaaccaagttcctgagcattcaca 688 ||| |||||||||| |||||||||||||||||||||||| Sbjct: 1579 agtctcagtggattcaaaaccaagttcctgagcattcaca 1540 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttaatttattgacaaggcct 149 |||||||||||||||||||| Sbjct: 1977 ttaatttattgacaaggcct 1958
>dbj|AK069931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035J06, full insert sequence Length = 2195 Score = 270 bits (136), Expect = 6e-69 Identities = 244/280 (87%) Strand = Plus / Minus Query: 409 ctaggacaccttgtgcgagatttttatgtagttcatgagccttctcagagcattaccgct 468 ||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 1819 ctaggacactttgtgcgagatttttatgtaattcatgagcctgctcagggctttaccgct 1760 Query: 469 gtcgatggcttcccttgccctgtcaagcgcggagttgatatcctgagctccactgcagcc 528 ||| |||||||| |||||||||||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 1759 gtcaatggcttctcttgccctgtcaagtgcggacttgatatcctcagctccagtgcagcc 1700 Query: 529 taacaagtggtcagccatagcggcgttaagaactattcggtcataagcgggccctttgtc 588 ||| | ||||||| |||| || || || || ||||||| |||||| || || ||||| || Sbjct: 1699 taagaggtggtcaaccatggcagcatttaggactattctgtcataggctggtcctttctc 1640 Query: 589 tccacccagtgctgacaaacccagctccaagtttttcagtactgatttatcagttcttgg 648 |||| ||| |||| |||||||| ||||||||||||||| |||||| ||||||||| ||| Sbjct: 1639 cccactcagcgctgccaaacccaactccaagtttttcaggactgatctatcagttcgtgg 1580 Query: 649 agtttcagtggatttgaaaccaagttcctgagcattcaca 688 ||| ||||| |||| |||||||||||||||||||||||| Sbjct: 1579 agtctcagtagattcaaaaccaagttcctgagcattcaca 1540 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttaatttattgacaaggcct 149 |||||||||||||||||||| Sbjct: 1977 ttaatttattgacaaggcct 1958
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 204 bits (103), Expect = 3e-49 Identities = 190/219 (86%) Strand = Plus / Plus Query: 409 ctaggacaccttgtgcgagatttttatgtagttcatgagccttctcagagcattaccgct 468 ||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 1632425 ctaggacactttgtgcgagatttttatgtaattcatgagcctgctcagggctttaccgct 1632484 Query: 469 gtcgatggcttcccttgccctgtcaagcgcggagttgatatcctgagctccactgcagcc 528 ||| |||||||| |||||||||||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 1632485 gtcaatggcttctcttgccctgtcaagtgcggacttgatatcctcagctccagtgcagcc 1632544 Query: 529 taacaagtggtcagccatagcggcgttaagaactattcggtcataagcgggccctttgtc 588 ||| | ||||||| |||| || || || || ||||||| |||||| || || ||||| || Sbjct: 1632545 taagaggtggtcaaccatggcagcatttaggactattctgtcataggctggtcctttctc 1632604 Query: 589 tccacccagtgctgacaaacccagctccaagtttttcag 627 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 1632605 cccactcagcgctgccaaacccaactccaagtttttcag 1632643 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 628 tactgatttatcagttcttggagtttcagtggatttgaaaccaagttcctgagcattcac 687 ||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 1632870 tactgatctatcagttcgtggagtctcagtggattcaaaaccaagttcctgagcattcac 1632929 Query: 688 a 688 | Sbjct: 1632930 a 1632930 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ttaatttattgacaaggcct 149 |||||||||||||||||||| Sbjct: 1632267 ttaatttattgacaaggcct 1632286
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 204 bits (103), Expect = 3e-49 Identities = 190/219 (86%) Strand = Plus / Plus Query: 409 ctaggacaccttgtgcgagatttttatgtagttcatgagccttctcagagcattaccgct 468 ||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 69528 ctaggacactttgtgcgagatttttatgtaattcatgagcctgctcagggctttaccgct 69587 Query: 469 gtcgatggcttcccttgccctgtcaagcgcggagttgatatcctgagctccactgcagcc 528 ||| |||||||| |||||||||||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 69588 gtcaatggcttctcttgccctgtcaagtgcggacttgatatcctcagctccagtgcagcc 69647 Query: 529 taacaagtggtcagccatagcggcgttaagaactattcggtcataagcgggccctttgtc 588 ||| | ||||||| |||| || || || || ||||||| |||||| || || ||||| || Sbjct: 69648 taagaggtggtcaaccatggcagcatttaggactattctgtcataggctggtcctttctc 69707 Query: 589 tccacccagtgctgacaaacccagctccaagtttttcag 627 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 69708 cccactcagcgctgccaaacccaactccaagtttttcag 69746 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 628 tactgatttatcagttcttggagtttcagtggatttgaaaccaagttcctgagcattcac 687 ||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 69973 tactgatctatcagttcgtggagtctcagtggattcaaaaccaagttcctgagcattcac 70032 Query: 688 a 688 | Sbjct: 70033 a 70033 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ttaatttattgacaaggcct 149 |||||||||||||||||||| Sbjct: 69370 ttaatttattgacaaggcct 69389
>emb|AL365179.30| Human DNA sequence from clone RP13-34C21 on chromosome Xq24-25 Contains a chromobox homolog 1 (HP1 beta homolog Drosophila) (CBX1) pseudogene and a CpG island, complete sequence Length = 180851 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 atttatcagttcttggagttt 653 ||||||||||||||||||||| Sbjct: 159480 atttatcagttcttggagttt 159500
>gb|AF461538.1| Clostridium botulinum strain 62A putative flagellin, HA-70 (ha70), HA-17 (ha17), HA-33 (ha33), and BotR (botR) genes, complete cds; and NTNH (ntnh) gene, partial cds Length = 7599 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gttaattaaacttaatttatt 139 ||||||||||||||||||||| Sbjct: 447 gttaattaaacttaatttatt 427
>gb|AC104120.2| Homo sapiens chromosome 5 clone RP11-404L6, complete sequence Length = 123372 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 635 ttatcagttcttggagtttca 655 ||||||||||||||||||||| Sbjct: 18368 ttatcagttcttggagtttca 18348
>ref|XM_628967.1| Dictyostelium discoideum hypothetical protein (DDB0192102), partial mRNA Length = 537 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ttaattaaacttaatttatt 139 |||||||||||||||||||| Sbjct: 515 ttaattaaacttaatttatt 496
>ref|XM_323031.1| Neurospora crassa OR74A related to 2''-O-ribosyl phosphate transferase RIT1 [MIPS] (NCU03730.1) partial mRNA Length = 1428 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aagacaatctctttgtttgc 221 |||||||||||||||||||| Sbjct: 1196 aagacaatctctttgtttgc 1177
>ref|XM_956413.1| Neurospora crassa OR74A related to 2''-O-ribosyl phosphate transferase RIT1 [MIPS] (NCU03730.1) partial mRNA Length = 1428 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aagacaatctctttgtttgc 221 |||||||||||||||||||| Sbjct: 1196 aagacaatctctttgtttgc 1177
>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence Length = 205816 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 agtttcagtggatttgaaac 668 |||||||||||||||||||| Sbjct: 124251 agtttcagtggatttgaaac 124270
>gb|BC088769.1| Xenopus tropicalis chymotrypsin-like, mRNA (cDNA clone MGC:108128 IMAGE:7005666), complete cds Length = 868 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 gtgacacgacaatgaggagcagttacaa 314 ||||||| |||||||| ||||||||||| Sbjct: 241 gtgacaccacaatgagcagcagttacaa 214
>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence Length = 241184 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atagtttgcatatgtttata 20 |||||||||||||||||||| Sbjct: 95967 atagtttgcatatgtttata 95986
>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence Length = 187659 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gacatgtggggcctggcccc 277 |||||||||||||||||||| Sbjct: 175556 gacatgtggggcctggcccc 175575
>gb|AC121923.3| Mus musculus BAC clone RP24-198O18 from chromosome 8, complete sequence Length = 172772 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 ttcagttaattaaacttaatttat 138 ||||||||||||||| |||||||| Sbjct: 31543 ttcagttaattaaacataatttat 31566
>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete sequence Length = 224482 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ttaattaaacttaatttatt 139 |||||||||||||||||||| Sbjct: 163519 ttaattaaacttaatttatt 163500
>ref|NM_001008776.1| Rattus norvegicus similar to serine proteinase inhibitor A11 gene (SERPINA11) (LOC362774), mRNA Length = 1435 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ctggccccaccttctcagtg 289 |||||||||||||||||||| Sbjct: 943 ctggccccaccttctcagtg 924
>gb|BC111708.1| Rattus norvegicus similar to serine proteinase inhibitor A11 gene (SERPINA11), mRNA (cDNA clone MGC:124917 IMAGE:7368690), complete cds Length = 1405 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ctggccccaccttctcagtg 289 |||||||||||||||||||| Sbjct: 921 ctggccccaccttctcagtg 902
>emb|AL356099.15| Human DNA sequence from clone RP11-357A18 on chromosome 10, complete sequence Length = 163152 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 tatcctgagctccactgcag 526 |||||||||||||||||||| Sbjct: 132281 tatcctgagctccactgcag 132300
>gb|AY325135.1| Rattus norvegicus Ab1-046 mRNA, complete cds Length = 1435 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ctggccccaccttctcagtg 289 |||||||||||||||||||| Sbjct: 943 ctggccccaccttctcagtg 924
>emb|AL021406.1|HS997K18 Human DNA sequence from clone RP5-997K18 on chromosome 20p12 Contains a novel gene, complete sequence Length = 119420 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttcagttaattaaacttaattta 137 |||||| ||||||||||||||||| Sbjct: 80152 tttcagctaattaaacttaattta 80175
>ref|NM_001011477.1| Xenopus tropicalis chymotrypsin-like (ctrl), mRNA Length = 868 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 gtgacacgacaatgaggagcagttacaa 314 ||||||| |||||||| ||||||||||| Sbjct: 241 gtgacaccacaatgagcagcagttacaa 214
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 taataaaatcctcaacaaactgtg 108 ||||||||||||||| |||||||| Sbjct: 109630 taataaaatcctcaaaaaactgtg 109607
>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence Length = 177578 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 tatcctgagctccactgcag 526 |||||||||||||||||||| Sbjct: 141960 tatcctgagctccactgcag 141941
>gb|AC154909.4| Mus musculus BAC clone RP23-185B22 from chromosome 8, complete sequence Length = 195479 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ttcagttaattaaacttaatttat 138 ||||||||||||||| |||||||| Sbjct: 44 ttcagttaattaaacataatttat 21
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gacatgtggggcctggcccc 277 |||||||||||||||||||| Sbjct: 2607 gacatgtggggcctggcccc 2588
>gb|AC084149.5| Homo sapiens BAC clone RP11-221F12 from 2, complete sequence Length = 64234 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 taattaaacttaatttattgacaa 144 |||||||| ||||||||||||||| Sbjct: 61075 taattaaaattaatttattgacaa 61098
>gb|AC011489.6|AC011489 Homo sapiens chromosome 19 clone CTB-179K24, complete sequence Length = 164034 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 cctttgtctccacccagtgc 600 |||||||||||||||||||| Sbjct: 5084 cctttgtctccacccagtgc 5103
>gb|AC153975.4| Mus musculus 10 BAC RP24-186L12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145072 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ttaattaaacttaatttatt 139 |||||||||||||||||||| Sbjct: 89609 ttaattaaacttaatttatt 89590
>emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chromosome 7, complete sequence Length = 214393 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 638 tcagttcttggagtttcagt 657 |||||||||||||||||||| Sbjct: 60462 tcagttcttggagtttcagt 60481
>gb|AC157776.1| Zea mays chromosome 8 BAC clone ZMMBBb0483G05, complete sequence Length = 147470 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gacatgtggggcctggcccc 277 |||||||||||||||||||| Sbjct: 100721 gacatgtggggcctggcccc 100702
>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8, complete sequence Length = 136932 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gacatgtggggcctggcccc 277 |||||||||||||||||||| Sbjct: 90928 gacatgtggggcctggcccc 90909
>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence Length = 162075 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 caacaaactgtgattccttt 116 |||||||||||||||||||| Sbjct: 106216 caacaaactgtgattccttt 106197
>gb|AF037338.1|AF037338 Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) gene, complete cds Length = 39108 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 cctttgtctccacccagtgc 600 |||||||||||||||||||| Sbjct: 22160 cctttgtctccacccagtgc 22179
>emb|AL513467.1|NC17E5 Neurospora crassa DNA linkage group V Cosmid contig 17E5 Length = 130049 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 aagacaatctctttgtttgc 221 |||||||||||||||||||| Sbjct: 41736 aagacaatctctttgtttgc 41755
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 aattaaacttaatttattga 141 |||||||||||||||||||| Sbjct: 54415 aattaaacttaatttattga 54396
>emb|AL731840.17| Mouse DNA sequence from clone RP23-52C15 on chromosome 2, complete sequence Length = 61822 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aatttattgacaaggcctgg 151 |||||||||||||||||||| Sbjct: 45151 aatttattgacaaggcctgg 45132 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,395,620 Number of Sequences: 3902068 Number of extensions: 6395620 Number of successful extensions: 129330 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129212 Number of HSP's gapped (non-prelim): 118 length of query: 701 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 678 effective length of database: 17,143,297,704 effective search space: 11623155843312 effective search space used: 11623155843312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)