ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27h17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR... 30 7.4
2PAR1_RAT (P26824) Proteinase-activated receptor 1 precursor (PAR... 30 7.4

>GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
          Length = 431

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
 Frame = +3

Query: 207 NEQKPNSYPPLTSYRENSPIRSFRISDFSLKAISPFNCNP---------RNHANYALFSY 359
           +++KPN   PL S REN   RS R ++F       FNC P         R+     L +Y
Sbjct: 229 SKEKPNCLAPLDSCRENYVCRS-RYAEFQ------FNCQPSLQTASGCRRDSYAACLLAY 281

Query: 360 SSSLGS 377
           +  +GS
Sbjct: 282 TGIIGS 287



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>PAR1_RAT (P26824) Proteinase-activated receptor 1 precursor (PAR-1)|
           (Thrombin receptor)
          Length = 432

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 187 MQGRKLGMNKNQIP-TPP*PHIGRTHQ*EASGFLTSP 294
           ++GR + +NK++ P  PP P I      +ASG+LTSP
Sbjct: 74  LEGRAVYLNKSRFPPMPPPPFISE----DASGYLTSP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,229,536
Number of Sequences: 219361
Number of extensions: 1768338
Number of successful extensions: 3405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3405
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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