Clone Name | rbasd27h17 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR... | 30 | 7.4 | 2 | PAR1_RAT (P26824) Proteinase-activated receptor 1 precursor (PAR... | 30 | 7.4 |
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>GFRA4_CHICK (O93512) GDNF family receptor alpha-4 precursor (GFR-alpha-4)| Length = 431 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Frame = +3 Query: 207 NEQKPNSYPPLTSYRENSPIRSFRISDFSLKAISPFNCNP---------RNHANYALFSY 359 +++KPN PL S REN RS R ++F FNC P R+ L +Y Sbjct: 229 SKEKPNCLAPLDSCRENYVCRS-RYAEFQ------FNCQPSLQTASGCRRDSYAACLLAY 281 Query: 360 SSSLGS 377 + +GS Sbjct: 282 TGIIGS 287
>PAR1_RAT (P26824) Proteinase-activated receptor 1 precursor (PAR-1)| (Thrombin receptor) Length = 432 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +1 Query: 187 MQGRKLGMNKNQIP-TPP*PHIGRTHQ*EASGFLTSP 294 ++GR + +NK++ P PP P I +ASG+LTSP Sbjct: 74 LEGRAVYLNKSRFPPMPPPPFISE----DASGYLTSP 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,229,536 Number of Sequences: 219361 Number of extensions: 1768338 Number of successful extensions: 3405 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3339 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3405 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)