ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105317.1| Zea mays PCO123556 mRNA sequence Length = 730 Score = 246 bits (124), Expect = 6e-62 Identities = 205/232 (88%) Strand = Plus / Minus Query: 153 aacagggttatctccacattgtcatggacaccctgcagaagcatttcaccgtcgtaggtg 212 ||||||||||||||||| |||||||||||||| |||||||||| || || |||||||| Sbjct: 422 aacagggttatctccacgttgtcatggacaccttgcagaagcagctcgccttcgtaggtc 363 Query: 213 acaactttcctcttcttggcggcccgcaaggtgccaactaatgcttcaaatatgtttgca 272 | | ||||||||||||||||||| |||||||||||||| ||||||||| || |||||| Sbjct: 362 aagatcttcctcttcttggcggccctcaaggtgccaactagtgcttcaaagatatttgca 303 Query: 273 catcggtcatcattgaagatgacaccaaatttgaccttgtaggagccgtcgggctgctgc 332 || || || || ||||||| || ||||| ||||||||||| ||||| |||||||||||| Sbjct: 302 caccgatcgtcgttgaagagaacgccaaacttgaccttgtaagagccatcgggctgctgc 243 Query: 333 tggccgagcctctggatctcctccttgagcctcccgacctcctcctcgacgt 384 ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 242 tggccgagcctatggatctcctccttgagcctcccgacctcctcctccacgt 191
>dbj|AK062756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G08, full insert sequence Length = 543 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Minus Query: 123 cttcaagcatcagcgaccgcggggggagcgaacagggttatctccacattgtcatggaca 182 ||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| | Sbjct: 346 cttcaggcagcagcgaccgctggaggaggcaacagggttatctcaacattgtcatgagcc 287 Query: 183 ccctgcagaagcatttcaccgtcgtaggtgacaactttcctcttcttggcggcccgcaag 242 ||||| ||||||| ||||| || || | |||| ||| ||||||||||| ||||||||| Sbjct: 286 ccctgtagaagcagctcaccatcatacttaacaatttttctcttcttggcagcccgcaag 227 Query: 243 gtgccaactaatgcttcaaatatgtttgcacatcggtcatcattgaagatgacaccaaat 302 ||||| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| || Sbjct: 226 gtgccgactagtgcttcaaatatgtttgcacaacggtcatcgttgaagataacaccgaaa 167 Query: 303 ttgaccttgtaggagccgtcgggctgctgctggccgagcctctggatctcctccttgagc 362 | ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 166 gttaccttgtaggatccatcgggctgcttctggccgagcctctggatctcctccttgagc 107 Query: 363 ctcccgacctcctcctcgacgt 384 |||| ||||||||||| |||| Sbjct: 106 ttccccacctcctcctccacgt 85
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 143 bits (72), Expect = 6e-31 Identities = 150/176 (85%) Strand = Plus / Plus Query: 123 cttcaagcatcagcgaccgcggggggagcgaacagggttatctccacattgtcatggaca 182 ||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| | Sbjct: 41517 cttcaggcagcagcgaccgctggaggaggcaacagggttatctcaacattgtcatgagcc 41576 Query: 183 ccctgcagaagcatttcaccgtcgtaggtgacaactttcctcttcttggcggcccgcaag 242 ||||| ||||||| ||||| || || | |||| ||| ||||||||||| ||||||||| Sbjct: 41577 ccctgtagaagcagctcaccatcatacttaacaatttttctcttcttggcagcccgcaag 41636 Query: 243 gtgccaactaatgcttcaaatatgtttgcacatcggtcatcattgaagatgacacc 298 ||||| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 41637 gtgccgactagtgcttcaaatatgtttgcacaacggtcatcgttgaagataacacc 41692 Score = 109 bits (55), Expect = 9e-21 Identities = 73/79 (92%) Strand = Plus / Plus Query: 306 accttgtaggagccgtcgggctgctgctggccgagcctctggatctcctccttgagcctc 365 ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 43516 accttgtaggatccatcgggctgcttctggccgagcctctggatctcctccttgagcttc 43575 Query: 366 ccgacctcctcctcgacgt 384 || ||||||||||| |||| Sbjct: 43576 cccacctcctcctccacgt 43594
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 143 bits (72), Expect = 6e-31 Identities = 150/176 (85%) Strand = Plus / Minus Query: 123 cttcaagcatcagcgaccgcggggggagcgaacagggttatctccacattgtcatggaca 182 ||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| | Sbjct: 27262878 cttcaggcagcagcgaccgctggaggaggcaacagggttatctcaacattgtcatgagcc 27262819 Query: 183 ccctgcagaagcatttcaccgtcgtaggtgacaactttcctcttcttggcggcccgcaag 242 ||||| ||||||| ||||| || || | |||| ||| ||||||||||| ||||||||| Sbjct: 27262818 ccctgtagaagcagctcaccatcatacttaacaatttttctcttcttggcagcccgcaag 27262759 Query: 243 gtgccaactaatgcttcaaatatgtttgcacatcggtcatcattgaagatgacacc 298 ||||| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 27262758 gtgccgactagtgcttcaaatatgtttgcacaacggtcatcgttgaagataacacc 27262703 Score = 109 bits (55), Expect = 9e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 306 accttgtaggagccgtcgggctgctgctggccgagcctctggatctcctccttgagcctc 365 ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 27260879 accttgtaggatccatcgggctgcttctggccgagcctctggatctcctccttgagcttc 27260820 Query: 366 ccgacctcctcctcgacgt 384 || ||||||||||| |||| Sbjct: 27260819 cccacctcctcctccacgt 27260801
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 143 bits (72), Expect = 6e-31 Identities = 150/176 (85%) Strand = Plus / Minus Query: 123 cttcaagcatcagcgaccgcggggggagcgaacagggttatctccacattgtcatggaca 182 ||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| | Sbjct: 27354201 cttcaggcagcagcgaccgctggaggaggcaacagggttatctcaacattgtcatgagcc 27354142 Query: 183 ccctgcagaagcatttcaccgtcgtaggtgacaactttcctcttcttggcggcccgcaag 242 ||||| ||||||| ||||| || || | |||| ||| ||||||||||| ||||||||| Sbjct: 27354141 ccctgtagaagcagctcaccatcatacttaacaatttttctcttcttggcagcccgcaag 27354082 Query: 243 gtgccaactaatgcttcaaatatgtttgcacatcggtcatcattgaagatgacacc 298 ||||| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 27354081 gtgccgactagtgcttcaaatatgtttgcacaacggtcatcgttgaagataacacc 27354026 Score = 109 bits (55), Expect = 9e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 306 accttgtaggagccgtcgggctgctgctggccgagcctctggatctcctccttgagcctc 365 ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 27352202 accttgtaggatccatcgggctgcttctggccgagcctctggatctcctccttgagcttc 27352143 Query: 366 ccgacctcctcctcgacgt 384 || ||||||||||| |||| Sbjct: 27352142 cccacctcctcctccacgt 27352124
>ref|NM_119519.2| Arabidopsis thaliana unknown protein AT4G33630 transcript variant AT4G33630.1 mRNA, complete cds Length = 2873 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 2810 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 2853
>ref|NM_179157.1| Arabidopsis thaliana unknown protein AT4G33630 transcript variant AT4G33630.2 mRNA, complete cds Length = 2877 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 2814 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 2857
>ref|NM_119520.2| Arabidopsis thaliana unknown protein AT4G33640 mRNA, complete cds Length = 559 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 235 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 192
>gb|BT025572.1| Arabidopsis thaliana At4g33640 mRNA, complete cds Length = 288 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 143 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 100
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79 Length = 199536 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 187962 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 188005
>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project) Length = 98124 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 40644 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 40687
>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete sequence Length = 108394 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 254 tgcttcaaatatgtttgcacatcggtcatcat 285 |||||||||||| ||||||||| ||||||||| Sbjct: 38964 tgcttcaaatatatttgcacattggtcatcat 38995 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 165 tccacattgtcatggacaccctgcagaagcatttcacc 202 ||||||||||||||||| || ||||| |||| |||||| Sbjct: 38875 tccacattgtcatggactccttgcagcagcaattcacc 38912
>emb|BX829162.1|CNS0A3EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL77ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 468 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 155 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 112
>emb|BX828619.1|CNS0A3FS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL22ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 502 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 187 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 144
>gb|AY087101.1| Arabidopsis thaliana clone 31672 mRNA, complete sequence Length = 516 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 246 ccaactaatgcttcaaatatgtttgcacatcggtcatcattgaa 289 ||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct: 200 ccaaccaatgcttcaaagatgttggcacatcgatcgtcattgaa 157
>dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36C13, TM0100a, complete sequence Length = 79575 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 254 tgcttcaaatatgtttgcacatcggtcatcat 285 |||||||||||||||||| ||||| ||||||| Sbjct: 74904 tgcttcaaatatgtttgcgcatcgatcatcat 74935
>gb|DQ144724.1| Bifidobacterium breve Tkt (tkt), HrcA (hrcA), DnaJ2 (dnaJ2), hypothetical protein, and Bac (bac) genes, complete cds Length = 6640 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 307 ccttgtaggagccgtcgggctg 328 |||||||||||||||||||||| Sbjct: 1405 ccttgtaggagccgtcgggctg 1426
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 307 ccttgtaggagccgtcgggctg 328 |||||||||||||||||||||| Sbjct: 497134 ccttgtaggagccgtcgggctg 497155
>ref|XM_748369.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor (Afu5g11890) partial mRNA Length = 4656 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 349 tctcctccttgagcctcccgacctcctcc 377 |||||| |||||||||||||| ||||||| Sbjct: 4579 tctccttcttgagcctcccgatctcctcc 4551
>emb|Z93059.1|SLZ93059 S.latifolia mRNA, clone CCLS 86.1 Length = 464 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 255 gcttcaaatatgtttgcacatcggtcatc 283 ||||||||||| |||||||| |||||||| Sbjct: 82 gcttcaaatatatttgcacagcggtcatc 54
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gagccgtcgggctgctgctg 334 |||||||||||||||||||| Sbjct: 3991523 gagccgtcgggctgctgctg 3991504
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tcgggctgctgctggccgag 340 |||||||||||||||||||| Sbjct: 1856035 tcgggctgctgctggccgag 1856016
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 accttgtaggagccgtcgggctgc 329 |||||||| ||||||||||||||| Sbjct: 433156 accttgtacgagccgtcgggctgc 433179
>ref|XM_594837.2| PREDICTED: Bos taurus similar to two pore segment channel 2 (LOC516679), mRNA Length = 1731 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cgtcgggctgctgctggccg 338 |||||||||||||||||||| Sbjct: 132 cgtcgggctgctgctggccg 151
>ref|XM_421389.1| PREDICTED: Gallus gallus similar to kinesin light chain 1J; KLC1J (LOC423484), mRNA Length = 3682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 atgcttcaaatatgtttgca 272 |||||||||||||||||||| Sbjct: 2771 atgcttcaaatatgtttgca 2752
>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence Length = 181178 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 taatgcttcaaatatgtttg 270 |||||||||||||||||||| Sbjct: 9430 taatgcttcaaatatgtttg 9449
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 accttgtaggagccgtcgggctgc 329 |||||||| ||||||||||||||| Sbjct: 3280723 accttgtacgagccgtcgggctgc 3280746
>gb|AC161228.7| Mus musculus chromosome 3, clone RP24-77I5, complete sequence Length = 222551 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 tctccacattgtcatggacaccct 186 ||||||||| |||||||||||||| Sbjct: 9522 tctccacatggtcatggacaccct 9545
>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence Length = 200088 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tctccacattgtcatggacaccct 186 ||||||||| |||||||||||||| Sbjct: 64206 tctccacatggtcatggacaccct 64183
>gb|AC136449.21| Medicago truncatula clone mth2-11k13, complete sequence Length = 112369 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 taacaattcttgctttctta 484 |||||||||||||||||||| Sbjct: 103290 taacaattcttgctttctta 103271
>emb|AJ971884.1| Streptomyces sp. Bt 47 partial 16S rRNA gene, isolate Bt 47 Length = 1395 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggggggagcgaacagggtta 162 |||||||||||||||||||| Sbjct: 695 ggggggagcgaacagggtta 714
>ref|XM_504456.1| Yarrowia lipolytica CLIB122, YALI0E27181g predicted mRNA Length = 2067 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ctggatctcctccttgagcc 363 |||||||||||||||||||| Sbjct: 612 ctggatctcctccttgagcc 593
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 accttgtaggagccgtcgggctgc 329 |||||||| ||||||||||||||| Sbjct: 3011898 accttgtacgagccgtcgggctgc 3011921
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gccgtcgggctgctgctggc 336 |||||||||||||||||||| Sbjct: 94251 gccgtcgggctgctgctggc 94232
>emb|AJ633046.1| Ipomoea nil partial mRNA for putative CRC transcription factor 2 (crc2 gene) Length = 350 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 cctctggatctcctccttga 360 |||||||||||||||||||| Sbjct: 285 cctctggatctcctccttga 266
>gb|AC148528.15| Medicago truncatula clone mth2-53h4, complete sequence Length = 141776 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 taacaattcttgctttctta 484 |||||||||||||||||||| Sbjct: 46313 taacaattcttgctttctta 46294
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 taatgcttcaaatatgtttg 270 |||||||||||||||||||| Sbjct: 686851 taatgcttcaaatatgtttg 686832
>emb|CR406513.1| Gallus gallus finished cDNA, clone ChEST731l14 Length = 1201 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 atgcttcaaatatgtttgca 272 |||||||||||||||||||| Sbjct: 288 atgcttcaaatatgtttgca 269
>emb|CR390855.1| Gallus gallus finished cDNA, clone ChEST378n2 Length = 1108 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 atgcttcaaatatgtttgca 272 |||||||||||||||||||| Sbjct: 741 atgcttcaaatatgtttgca 722
>gb|AC133794.2| Homo sapiens 12 BAC RP11-193M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89995 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tatctccacattgtcatgga 180 |||||||||||||||||||| Sbjct: 6816 tatctccacattgtcatgga 6835
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ccgacctcctcctcgacgtg 385 |||||||||||||||||||| Sbjct: 875435 ccgacctcctcctcgacgtg 875454
>dbj|AB100016.1| Leiognathus elongatus mitochondrial genes for NADH dehydrogenase subunits 4, tRNA-His, tRNA-Ser, tRNA-Leu, NADH dehydrogenase subunits 5 Length = 3419 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 410 cctcgccggtttcttctccgatgatgct 437 ||||||||||||||||||| | |||||| Sbjct: 2757 cctcgccggtttcttctccaaagatgct 2784
>gb|AC154860.2| Mus musculus BAC clone RP23-9N20 from 13, complete sequence Length = 192309 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 acattgtcatggacaccctg 187 |||||||||||||||||||| Sbjct: 191813 acattgtcatggacaccctg 191794
>gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, complete sequence Length = 177816 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 acattgtcatggacaccctg 187 |||||||||||||||||||| Sbjct: 63637 acattgtcatggacaccctg 63656
>emb|Z71633.1|SCYNR018W S.cerevisiae chromosome XIV reading frame ORF YNR018w Length = 1757 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ccgtcgggctgctgctggcc 337 |||||||||||||||||||| Sbjct: 1161 ccgtcgggctgctgctggcc 1180
>emb|AJ558236.1|HSA558236 Homo sapiens partial CART1 gene for cartilage paired-class homeoprotein 1, exons 1-3 and joined CDS Length = 6836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tatctccacattgtcatgga 180 |||||||||||||||||||| Sbjct: 6388 tatctccacattgtcatgga 6369
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 accttgtaggagccgtcgggctgc 329 |||||||| ||||||||||||||| Sbjct: 1865049 accttgtacgagccgtcgggctgc 1865026
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cgtcgggctgctgctggccg 338 |||||||||||||||||||| Sbjct: 1125177 cgtcgggctgctgctggccg 1125158
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ctggatctcctccttgagcc 363 |||||||||||||||||||| Sbjct: 3221648 ctggatctcctccttgagcc 3221629 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,339,041 Number of Sequences: 3902068 Number of extensions: 4339041 Number of successful extensions: 96171 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95523 Number of HSP's gapped (non-prelim): 647 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
