Clone Information

BLAST Search Result

Clone Name	rbasd27h05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467753.1\| Oryza sativa (japonica cultivar-group), mRNA	301	2e-78
2	dbj\|AK061274.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	301	2e-78
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	5e-23
4	dbj\|AP005297.3\| Oryza sativa (japonica cultivar-group) genomic D...	117	5e-23
5	dbj\|AP004114.3\| Oryza sativa (japonica cultivar-group) genomic D...	98	5e-17
6	gb\|AY108984.1\| Zea mays PCO142910 mRNA sequence	70	1e-08
7	gb\|AC144531.2\| Homo sapiens 3 BAC RP11-945M2 (Roswell Park Cance...	48	0.041
8	gb\|AC117578.9\| Mus musculus chromosome 5, clone RP23-36I22, comp...	44	0.64
9	gb\|AC140220.4\| Mus musculus BAC clone RP23-279P6 from 5, complet...	44	0.64
10	gb\|AE005020.1\| Halobacterium sp. NRC-1 section 51 of 170 of the ...	42	2.5
11	emb\|AL928716.15\| Zebrafish DNA sequence from clone DKEY-23K6 in ...	42	2.5
12	emb\|AL135752.6\|CNS01DVG Human chromosome 14 DNA sequence BAC R-4...	42	2.5
13	emb\|BX005276.7\| Mouse DNA sequence from clone RP24-85M20 on chro...	42	2.5
14	emb\|AL133312.3\|CNS01DUP Human chromosome 14 DNA sequence BAC R-2...	42	2.5
15	gb\|AC122318.4\| Mus musculus BAC clone RP23-306H2 from 16, comple...	42	2.5
16	emb\|AL929276.7\| Zebrafish DNA sequence from clone CH211-59H6, co...	42	2.5
17	gb\|AC133954.3\| Mus musculus BAC clone RP23-154C17 from chromosom...	40	9.9
18	gb\|AC137583.7\| Mus musculus chromosome 13, clone RP23-140F24, co...	40	9.9
19	gb\|AY500145.1\| Craterostigma plantagineum expansin A2 (EXPA2) mR...	40	9.9
20	gb\|AC002124.2\| Homo sapiens BAC clone CTB-180O1 from 7, complete...	40	9.9
21	gb\|AC124980.7\| Mus musculus chromosome 13, clone RP24-133J11, co...	40	9.9
22	ref\|XM_993739.1\| PREDICTED: Mus musculus cDNA sequence AK129128 ...	40	9.9
23	ref\|XM_922094.2\| PREDICTED: Mus musculus cDNA sequence AK129128,...	40	9.9
24	ref\|XM_898433.2\| PREDICTED: Mus musculus cDNA sequence AK129128,...	40	9.9
25	gb\|AC131785.3\| Mus musculus BAC clone RP24-397D13 from chromosom...	40	9.9
26	gb\|BC035338.1\| Mus musculus cDNA clone IMAGE:4953358, **** WARNI...	40	9.9
27	emb\|BX664742.15\| Zebrafish DNA sequence from clone DKEY-193L3 in...	40	9.9
28	gb\|AC183612.3\| Pan troglodytes BAC clone CH251-194C16 from chrom...	40	9.9
29	emb\|AL596244.9\| Human DNA sequence from clone RP11-244O19 on chr...	40	9.9
30	ref\|XM_500190.1\| Yarrowia lipolytica CLIB122, YALI0A18161g predi...	40	9.9
31	emb\|AL445591.10\| Human DNA sequence from clone RP11-314N2 on chr...	40	9.9
32	emb\|AL109941.17\|HSJ435K13 Human DNA sequence from clone RP3-435K...	40	9.9
33	emb\|CR382136.1\| Debaryomyces hansenii chromosome D of strain CBS...	40	9.9
34	gb\|AC063947.30\| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Ca...	40	9.9
35	emb\|AL671118.30\| Mouse DNA sequence from clone RP23-256J17 on ch...	40	9.9
36	dbj\|AK162476.1\| Mus musculus 12 days embryo embryonic body betwe...	40	9.9
37	gb\|AC154914.3\| Pan troglodytes BAC clone RP43-172A19 from chromo...	40	9.9
38	dbj\|AK129128.1\| Mus musculus mRNA for mKIAA0372 protein	40	9.9
39	gb\|AC092638.2\| Homo sapiens BAC clone RP11-363G3 from 2, complet...	40	9.9
40	gb\|AC005294.1\| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Hu...	40	9.9
41	emb\|BX322570.4\| Zebrafish DNA sequence from clone DKEY-27H10 in ...	40	9.9
42	gb\|AC007214.13\|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19...	40	9.9
43	emb\|BX088560.7\| Zebrafish DNA sequence from clone DKEY-237O15 in...	40	9.9
44	dbj\|AP000775.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.9
45	emb\|AL929259.13\| Mouse DNA sequence from clone RP23-141E12 on ch...	40	9.9
46	emb\|CR382127.1\| Yarrowia lipolytica chromosome A of strain CLIB1...	40	9.9
47	emb\|AL589902.18\| Mouse DNA sequence from clone RP23-108D12 on ch...	40	9.9

>ref|XM_467753.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1022

 Score =  301 bits (152), Expect = 2e-78
 Identities = 383/460 (83%)
 Strand = Plus / Minus

                                                                       
Query: 146 ctggtgaggtggcacccgtccgcgacaaattgctgcagaggatctagggcaccttgcacg 205
           |||||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||
Sbjct: 822 ctggtgaggtggcacccgtcagagacaaactgctgcagaggattaagggcaccttgcacg 763

                                                                       
Query: 206 aactggaggaaggaaccatctgctgcagcaacatgctcaatgaataggtagagaccaccg 265
           ||  |||||||||| ||||| |  |||||||||||||||||||||| |||||||||||| 
Sbjct: 762 aatcggaggaaggatccatcaggcgcagcaacatgctcaatgaatatgtagagaccacca 703

                                                                       
Query: 266 ggctttaggactctctttatttctcttaatgccatatcagtgtcttttacagaacacaac 325
           ||||| |||||||  ||||||||||| |||||||| |||  |||  ||||||||||||  
Sbjct: 702 ggcttcaggactcgttttatttctctcaatgccatttcaacgtcacttacagaacacatt 643

                                                                       
Query: 326 accaatgtaccaataactgcatccatggaaccgtcttctgctggcaaagcttcgccaacc 385
           ||||  || |||| ||| |||||||| |||  ||| || |||||||||||||| ||||||
Sbjct: 642 accagagtgccaacaacagcatccattgaattgtcctcagctggcaaagcttcaccaacc 583

                                                                       
Query: 386 cctcttctgaaagtgaaatttgaggacggaagcccagcagaagttgctgctgctctagaa 445
           ||||||||||| ||||| || || |  ||||| ||||||||   ||| |||||||| | |
Sbjct: 582 cctcttctgaaggtgaagttcgaaggtggaagtccagcagacactgcagctgctctggca 523

                                                                       
Query: 446 tactcctccatgtacatgttaggatccaccccaattacatttaccccatcagcacttgcg 505
           |||||||||||||   | |||||||||||||||| ||  || || ||||| ||| |||| 
Sbjct: 522 tactcctccatgtgtttattaggatccaccccaactatgttaacgccatcggcatttgca 463

                                                                       
Query: 506 tagtactttaagttggggcctgttccaacaccaagctccagaatgttcttcccctcaact 565
           |||||||| |  || |||||||||||||||||||| || ||||||||||||||  ||   
Sbjct: 462 tagtacttgagattagggcctgttccaacaccaagttcaagaatgttcttcccagcagtc 403

                                                   
Query: 566 gacaattgggagaagagattcgatttatactgcgcaatct 605
             ||||||||| ||||| || ||||||||||| |||||||
Sbjct: 402 atcaattgggaaaagagctttgatttatactgtgcaatct 363



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 73/84 (86%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                       
Query: 635 cttgtccatggccggtcgcgtagagcttctcgtaccagcccggcctcgctgggtgcaccc 694
           |||||||||||||| | || |||| ||||||||||||  ||||||| || ||||||||||
Sbjct: 340 cttgtccatggccg-tggcatagaacttctcgtaccactccggcctggcagggtgcaccc 282

                                   
Query: 695 gctgaagcatcacgtccgggtcga 718
           ||| ||||||||| || |||||||
Sbjct: 281 gctcaagcatcacttcggggtcga 258



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 31  tcatttacaggctacaccataaacatgggggct 63
           ||||||||| ||||| |||||||||||||||||
Sbjct: 937 tcatttacatgctactccataaacatgggggct 905

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>dbj|AK061274.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E04, full
           insert sequence
          Length = 1022

 Score =  301 bits (152), Expect = 2e-78
 Identities = 383/460 (83%)
 Strand = Plus / Minus

                                                                       
Query: 146 ctggtgaggtggcacccgtccgcgacaaattgctgcagaggatctagggcaccttgcacg 205
           |||||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||
Sbjct: 822 ctggtgaggtggcacccgtcagagacaaactgctgcagaggattaagggcaccttgcacg 763

                                                                       
Query: 206 aactggaggaaggaaccatctgctgcagcaacatgctcaatgaataggtagagaccaccg 265
           ||  |||||||||| ||||| |  |||||||||||||||||||||| |||||||||||| 
Sbjct: 762 aatcggaggaaggatccatcaggcgcagcaacatgctcaatgaatatgtagagaccacca 703

                                                                       
Query: 266 ggctttaggactctctttatttctcttaatgccatatcagtgtcttttacagaacacaac 325
           ||||| |||||||  ||||||||||| |||||||| |||  |||  ||||||||||||  
Sbjct: 702 ggcttcaggactcgttttatttctctcaatgccatttcaacgtcacttacagaacacatt 643

                                                                       
Query: 326 accaatgtaccaataactgcatccatggaaccgtcttctgctggcaaagcttcgccaacc 385
           ||||  || |||| ||| |||||||| |||  ||| || |||||||||||||| ||||||
Sbjct: 642 accagagtgccaacaacagcatccattgaattgtcctcagctggcaaagcttcaccaacc 583

                                                                       
Query: 386 cctcttctgaaagtgaaatttgaggacggaagcccagcagaagttgctgctgctctagaa 445
           ||||||||||| ||||| || || |  ||||| ||||||||   ||| |||||||| | |
Sbjct: 582 cctcttctgaaggtgaagttcgaaggtggaagtccagcagacactgcagctgctctggca 523

                                                                       
Query: 446 tactcctccatgtacatgttaggatccaccccaattacatttaccccatcagcacttgcg 505
           |||||||||||||   | |||||||||||||||| ||  || || ||||| ||| |||| 
Sbjct: 522 tactcctccatgtgtttattaggatccaccccaactatgttaacgccatcggcatttgca 463

                                                                       
Query: 506 tagtactttaagttggggcctgttccaacaccaagctccagaatgttcttcccctcaact 565
           |||||||| |  || |||||||||||||||||||| || ||||||||||||||  ||   
Sbjct: 462 tagtacttgagattagggcctgttccaacaccaagttcaagaatgttcttcccagcagtc 403

                                                   
Query: 566 gacaattgggagaagagattcgatttatactgcgcaatct 605
             ||||||||| ||||| || ||||||||||| |||||||
Sbjct: 402 atcaattgggaaaagagctttgatttatactgtgcaatct 363



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 73/84 (86%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                       
Query: 635 cttgtccatggccggtcgcgtagagcttctcgtaccagcccggcctcgctgggtgcaccc 694
           |||||||||||||| | || |||| ||||||||||||  ||||||| || ||||||||||
Sbjct: 340 cttgtccatggccg-tggcatagaacttctcgtaccactccggcctggcagggtgcaccc 282

                                   
Query: 695 gctgaagcatcacgtccgggtcga 718
           ||| ||||||||| || |||||||
Sbjct: 281 gctcaagcatcacttcggggtcga 258



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 31  tcatttacaggctacaccataaacatgggggct 63
           ||||||||| ||||| |||||||||||||||||
Sbjct: 937 tcatttacatgctactccataaacatgggggct 905

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  117 bits (59), Expect = 5e-23
 Identities = 185/227 (81%)
 Strand = Plus / Minus

                                                                            
Query: 383      acccctcttctgaaagtgaaatttgaggacggaagcccagcagaagttgctgctgctcta 442
                |||||||||||||| ||||| || || |  ||||| ||||||||   ||| |||||||| 
Sbjct: 31229883 acccctcttctgaaggtgaagttcgaaggtggaagtccagcagacactgcagctgctctg 31229824

                                                                            
Query: 443      gaatactcctccatgtacatgttaggatccaccccaattacatttaccccatcagcactt 502
                | ||||||||||||||   | |||||||||||||||| ||  || || ||||| ||| ||
Sbjct: 31229823 gcatactcctccatgtgtttattaggatccaccccaactatgttaacgccatcggcattt 31229764

                                                                            
Query: 503      gcgtagtactttaagttggggcctgttccaacaccaagctccagaatgttcttcccctca 562
                || |||||||| |  || |||||||||||||||||||| || ||||||||||||||  ||
Sbjct: 31229763 gcatagtacttgagattagggcctgttccaacaccaagttcaagaatgttcttcccagca 31229704

                                                               
Query: 563      actgacaattgggagaagagattcgatttatactgcgcaatctgcaa 609
                     ||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 31229703 gtcatcaattgggaaaagagctttgatttatactgtgcaatctgcaa 31229657



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                            
Query: 146      ctggtgaggtggcacccgtccgcgacaaattgctgcagaggatctagggcaccttgcacg 205
                |||||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||
Sbjct: 31230953 ctggtgaggtggcacccgtcagagacaaactgctgcagaggattaagggcaccttgcacg 31230894

                                     
Query: 206      aactggaggaaggaaccatct 226
                ||  |||||||||| ||||||
Sbjct: 31230893 aatcggaggaaggatccatct 31230873



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 230      gcagcaacatgctcaatgaataggtagagaccaccgggctttaggactctctttatttct 289
                |||||||||||||||||||||| |||||||||||| ||||| |||||||  |||||||||
Sbjct: 31230750 gcagcaacatgctcaatgaatatgtagagaccaccaggcttcaggactcgttttatttct 31230691



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                            
Query: 635      cttgtccatggccggtcgcgtagagcttctcgtaccagcccggcctcgctgggtgcaccc 694
                |||||||||||||| | || |||| ||||||||||||  ||||||| || ||||||||||
Sbjct: 31229169 cttgtccatggccg-tggcatagaacttctcgtaccactccggcctggcagggtgcaccc 31229111

                             
Query: 695      gctgaagcatcac 707
                ||| |||||||||
Sbjct: 31229110 gctcaagcatcac 31229098



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 31       tcatttacaggctacaccataaacatgggggct 63
                ||||||||| ||||| |||||||||||||||||
Sbjct: 31231068 tcatttacatgctactccataaacatgggggct 31231036



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                            
Query: 312      ttacagaacacaacaccaatgtaccaataactgcatccatggaaccgtcttctgctggca 371
                ||||||||||||  ||||  || |||| ||| |||||||| |||  ||| || |||||||
Sbjct: 31230029 ttacagaacacattaccagagtgccaacaacagcatccattgaattgtcctcagctggca 31229970

                              
Query: 372      aagcttcgccaacc 385
                ||||||| ||||||
Sbjct: 31229969 aagcttcaccaacc 31229956

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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score =  117 bits (59), Expect = 5e-23
 Identities = 185/227 (81%)
 Strand = Plus / Minus

                                                                          
Query: 383    acccctcttctgaaagtgaaatttgaggacggaagcccagcagaagttgctgctgctcta 442
              |||||||||||||| ||||| || || |  ||||| ||||||||   ||| |||||||| 
Sbjct: 109726 acccctcttctgaaggtgaagttcgaaggtggaagtccagcagacactgcagctgctctg 109667

                                                                          
Query: 443    gaatactcctccatgtacatgttaggatccaccccaattacatttaccccatcagcactt 502
              | ||||||||||||||   | |||||||||||||||| ||  || || ||||| ||| ||
Sbjct: 109666 gcatactcctccatgtgtttattaggatccaccccaactatgttaacgccatcggcattt 109607

                                                                          
Query: 503    gcgtagtactttaagttggggcctgttccaacaccaagctccagaatgttcttcccctca 562
              || |||||||| |  || |||||||||||||||||||| || ||||||||||||||  ||
Sbjct: 109606 gcatagtacttgagattagggcctgttccaacaccaagttcaagaatgttcttcccagca 109547

                                                             
Query: 563    actgacaattgggagaagagattcgatttatactgcgcaatctgcaa 609
                   ||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 109546 gtcatcaattgggaaaagagctttgatttatactgtgcaatctgcaa 109500



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                          
Query: 146    ctggtgaggtggcacccgtccgcgacaaattgctgcagaggatctagggcaccttgcacg 205
              |||||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||
Sbjct: 110796 ctggtgaggtggcacccgtcagagacaaactgctgcagaggattaagggcaccttgcacg 110737

                                   
Query: 206    aactggaggaaggaaccatct 226
              ||  |||||||||| ||||||
Sbjct: 110736 aatcggaggaaggatccatct 110716



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 230    gcagcaacatgctcaatgaataggtagagaccaccgggctttaggactctctttatttct 289
              |||||||||||||||||||||| |||||||||||| ||||| |||||||  |||||||||
Sbjct: 110593 gcagcaacatgctcaatgaatatgtagagaccaccaggcttcaggactcgttttatttct 110534



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                          
Query: 635    cttgtccatggccggtcgcgtagagcttctcgtaccagcccggcctcgctgggtgcaccc 694
              |||||||||||||| | || |||| ||||||||||||  ||||||| || ||||||||||
Sbjct: 109012 cttgtccatggccg-tggcatagaacttctcgtaccactccggcctggcagggtgcaccc 108954

                           
Query: 695    gctgaagcatcac 707
              ||| |||||||||
Sbjct: 108953 gctcaagcatcac 108941



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 31     tcatttacaggctacaccataaacatgggggct 63
              ||||||||| ||||| |||||||||||||||||
Sbjct: 110911 tcatttacatgctactccataaacatgggggct 110879



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                          
Query: 312    ttacagaacacaacaccaatgtaccaataactgcatccatggaaccgtcttctgctggca 371
              ||||||||||||  ||||  || |||| ||| |||||||| |||  ||| || |||||||
Sbjct: 109872 ttacagaacacattaccagagtgccaacaacagcatccattgaattgtcctcagctggca 109813

                            
Query: 372    aagcttcgccaacc 385
              ||||||| ||||||
Sbjct: 109812 aagcttcaccaacc 109799

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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1118_G04
          Length = 134464

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                       
Query: 146 ctggtgaggtggcacccgtccgcgacaaattgctgcagaggatctagggcaccttgcacg 205
           |||||||||||||||||||| | |||||| |||||||||||||  |||||||||||||||
Sbjct: 821 ctggtgaggtggcacccgtcagagacaaactgctgcagaggattaagggcaccttgcacg 762

                                
Query: 206 aactggaggaaggaaccatct 226
           ||  |||||||||| ||||||
Sbjct: 761 aatcggaggaaggatccatct 741



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 gcagcaacatgctcaatgaataggtagagaccaccgggctttaggactctctttatttct 289
           |||||||||||||||||||||| |||||||||||| ||||| |||||||  |||||||||
Sbjct: 618 gcagcaacatgctcaatgaatatgtagagaccaccaggcttcaggactcgttttatttct 559



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 31  tcatttacaggctacaccataaacatgggggct 63
           ||||||||| ||||| |||||||||||||||||
Sbjct: 936 tcatttacatgctactccataaacatgggggct 904

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>gb|AY108984.1| Zea mays PCO142910 mRNA sequence
          Length = 506

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                       
Query: 445 atactcctccatgtacatgttaggatccaccccaattacatttaccccatcagcacttgc 504
           ||||| |||||||| | ||||||| ||||| || || ||||| || |||||  |||||||
Sbjct: 505 atacttctccatgtgcttgttagggtccactccgatcacattaacgccatcttcacttgc 446

                                                              
Query: 505 gtagtactttaagttggggcctgttccaacaccaagctccagaatgttctt 555
            ||||| || ||||| || ||||| |||||||| ||||| |||||||||||
Sbjct: 445 atagtatttgaagttaggccctgtcccaacaccgagctcgagaatgttctt 395

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>gb|AC144531.2| Homo sapiens 3 BAC RP11-945M2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127580

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 541   ctccagaatgttcttcccctcaac 564
             ||||||||||||||||||||||||
Sbjct: 52690 ctccagaatgttcttcccctcaac 52667

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>gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, complete sequence
          Length = 213371

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 269    tttaggactctctttatttctcttaa 294
              ||||| ||||||||||||||||||||
Sbjct: 189891 tttagaactctctttatttctcttaa 189866

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>gb|AC140220.4| Mus musculus BAC clone RP23-279P6 from 5, complete sequence
          Length = 182156

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 269  tttaggactctctttatttctcttaa 294
            ||||| ||||||||||||||||||||
Sbjct: 4167 tttagaactctctttatttctcttaa 4142

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>gb|AE005020.1| Halobacterium sp. NRC-1 section 51 of 170 of the complete genome
          Length = 9823

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 703  atcacgtccgggtcgatggct 723
            |||||||||||||||||||||
Sbjct: 6265 atcacgtccgggtcgatggct 6285

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>emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in linkage group 20,
             complete sequence
          Length = 246647

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ataaacatgggggctaatgat 69
             |||||||||||||||||||||
Sbjct: 37743 ataaacatgggggctaatgat 37763

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>emb|AL135752.6|CNS01DVG Human chromosome 14 DNA sequence BAC R-401H9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171754

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 283   tatttctcttaatgccatatc 303
             |||||||||||||||||||||
Sbjct: 30116 tatttctcttaatgccatatc 30096

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>emb|BX005276.7| Mouse DNA sequence from clone RP24-85M20 on chromosome 4, complete
             sequence
          Length = 54826

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     ctccttccaacaggcagaacatgtc 32
             |||||||||||||||| ||||||||
Sbjct: 35459 ctccttccaacaggcacaacatgtc 35435

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>emb|AL133312.3|CNS01DUP Human chromosome 14 DNA sequence BAC R-229B21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155064

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 283   tatttctcttaatgccatatc 303
             |||||||||||||||||||||
Sbjct: 65330 tatttctcttaatgccatatc 65350

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>gb|AC122318.4| Mus musculus BAC clone RP23-306H2 from 16, complete sequence
          Length = 207909

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 432   ctgctgctctagaatactcctccat 456
             |||||||||||||| ||||||||||
Sbjct: 99648 ctgctgctctagaacactcctccat 99624

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>emb|AL929276.7| Zebrafish DNA sequence from clone CH211-59H6, complete sequence
          Length = 210630

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ataaacatgggggctaatgat 69
             |||||||||||||||||||||
Sbjct: 63175 ataaacatgggggctaatgat 63195

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>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    cagaacacaacaccaatgta 334
              ||||||||||||||||||||
Sbjct: 159803 cagaacacaacaccaatgta 159784

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>gb|AC137583.7| Mus musculus chromosome 13, clone RP23-140F24, complete sequence
          Length = 218518

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ttacagaacacaacaccaat 331
             ||||||||||||||||||||
Sbjct: 34025 ttacagaacacaacaccaat 34044

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>gb|AY500145.1| Craterostigma plantagineum expansin A2 (EXPA2) mRNA, partial cds
          Length = 657

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 tttatactgcgcaatctgca 608
           ||||||||||||||||||||
Sbjct: 327 tttatactgcgcaatctgca 308

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>gb|AC002124.2| Homo sapiens BAC clone CTB-180O1 from 7, complete sequence
          Length = 100923

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  aattgctgcagaggatctag 192
            ||||||||||||||||||||
Sbjct: 3058 aattgctgcagaggatctag 3039

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>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ttacagaacacaacaccaat 331
              ||||||||||||||||||||
Sbjct: 149928 ttacagaacacaacaccaat 149947

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>ref|XM_993739.1| PREDICTED: Mus musculus cDNA sequence AK129128 (AK129128), mRNA
          Length = 5001

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggcttgctcgatgttttcag 137
            ||||||||||||||||||||
Sbjct: 2640 ggcttgctcgatgttttcag 2621

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>ref|XM_922094.2| PREDICTED: Mus musculus cDNA sequence AK129128, transcript variant 5
            (AK129128), mRNA
          Length = 5781

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggcttgctcgatgttttcag 137
            ||||||||||||||||||||
Sbjct: 3020 ggcttgctcgatgttttcag 3001

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>ref|XM_898433.2| PREDICTED: Mus musculus cDNA sequence AK129128, transcript variant 2
            (AK129128), mRNA
          Length = 5381

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggcttgctcgatgttttcag 137
            ||||||||||||||||||||
Sbjct: 3020 ggcttgctcgatgttttcag 3001

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>gb|AC131785.3| Mus musculus BAC clone RP24-397D13 from chromosome 17, complete
             sequence
          Length = 147557

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   gatgttttcagctgttttcc 146
             ||||||||||||||||||||
Sbjct: 82238 gatgttttcagctgttttcc 82219

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>gb|BC035338.1| Mus musculus cDNA clone IMAGE:4953358, **** WARNING: chimeric clone
            ****
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggcttgctcgatgttttcag 137
            ||||||||||||||||||||
Sbjct: 1309 ggcttgctcgatgttttcag 1290

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>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8, complete
              sequence
          Length = 215608

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 310    ttttacagaacacaacaccaatgt 333
              ||||| ||||||||||||||||||
Sbjct: 175862 ttttagagaacacaacaccaatgt 175885

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>gb|AC183612.3| Pan troglodytes BAC clone CH251-194C16 from chromosome 12, complete
             sequence
          Length = 135756

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   ttacatttaccccatcagca 499
             ||||||||||||||||||||
Sbjct: 73007 ttacatttaccccatcagca 72988

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>emb|AL596244.9| Human DNA sequence from clone RP11-244O19 on chromosome 9 Contains the
             3' end of a novel gene (LOC158135), complete sequence
          Length = 43469

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   ggaggaaggaaccatctgct 229
             ||||||||||||||||||||
Sbjct: 11699 ggaggaaggaaccatctgct 11718

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>ref|XM_500190.1| Yarrowia lipolytica CLIB122, YALI0A18161g predicted mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 221  ccatctgctgcagcaacatgctca 244
            ||||||||||| ||||||||||||
Sbjct: 1087 ccatctgctgctgcaacatgctca 1064

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>emb|AL445591.10| Human DNA sequence from clone RP11-314N2 on chromosome 1 Contains a
             novel processed pseudogene, the GJA8 gene for gap junction
             protein alpha 8, 50kDa (connexin 50) protein,  the 5' end
             of the gene for putative G-protein coupled receptor
             (SH120) and a CpG island, complete sequence
          Length = 140092

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   tgttttcctggtgaggtggcaccc 162
             ||||| ||||||||||||||||||
Sbjct: 79006 tgtttccctggtgaggtggcaccc 79029

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>emb|AL109941.17|HSJ435K13 Human DNA sequence from clone RP3-435K13 on chromosome 6q14.1-16.1
              Contains a novel pseudogene, complete sequence
          Length = 151301

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    ttacatttaccccatcagca 499
              ||||||||||||||||||||
Sbjct: 103611 ttacatttaccccatcagca 103630

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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    tctttatttctcttaatgcc 298
              ||||||||||||||||||||
Sbjct: 296853 tctttatttctcttaatgcc 296834

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>gb|AC063947.30| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 196877

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gtcttctgctggcaaagctt 377
             ||||||||||||||||||||
Sbjct: 90170 gtcttctgctggcaaagctt 90151

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>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete
             sequence
          Length = 234055

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tgttttcagctgttttcctg 148
             ||||||||||||||||||||
Sbjct: 31790 tgttttcagctgttttcctg 31809

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>dbj|AK162476.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430081E20 product:hypothetical protein, full
            insert sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggcttgctcgatgttttcag 137
            ||||||||||||||||||||
Sbjct: 1441 ggcttgctcgatgttttcag 1422

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>gb|AC154914.3| Pan troglodytes BAC clone RP43-172A19 from chromosome 7, complete
              sequence
          Length = 154883

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    aattgctgcagaggatctag 192
              ||||||||||||||||||||
Sbjct: 116096 aattgctgcagaggatctag 116077

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>dbj|AK129128.1| Mus musculus mRNA for mKIAA0372 protein
          Length = 4333

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 118 ggcttgctcgatgttttcag 137
           ||||||||||||||||||||
Sbjct: 376 ggcttgctcgatgttttcag 357

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>gb|AC092638.2| Homo sapiens BAC clone RP11-363G3 from 2, complete sequence
          Length = 167941

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   tctctttatttctcttaatg 296
             ||||||||||||||||||||
Sbjct: 94497 tctctttatttctcttaatg 94478

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>gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Human Bac Library)
              complete sequence
          Length = 113762

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ttacatttaccccatcagca 499
              ||||||||||||||||||||
Sbjct: 106601 ttacatttaccccatcagca 106582

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>emb|BX322570.4| Zebrafish DNA sequence from clone DKEY-27H10 in linkage group 1,
             complete sequence
          Length = 185032

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   gctgctgctctagaatactc 450
             ||||||||||||||||||||
Sbjct: 75936 gctgctgctctagaatactc 75955

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>gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 154685

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ttacatttaccccatcagca 499
             ||||||||||||||||||||
Sbjct: 81675 ttacatttaccccatcagca 81694

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>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10,
              complete sequence
          Length = 156486

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    ttatttctcttaatgccatatcag 305
              |||||| |||||||||||||||||
Sbjct: 145133 ttatttgtcttaatgccatatcag 145156

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>dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-708B6, complete
             sequence
          Length = 189955

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   cttttacagaacacaacacc 328
             ||||||||||||||||||||
Sbjct: 36851 cttttacagaacacaacacc 36870

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>emb|AL929259.13| Mouse DNA sequence from clone RP23-141E12 on chromosome 2, complete
            sequence
          Length = 153645

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 467  ggatccaccccaattacatttacc 490
            |||||||||||| |||||||||||
Sbjct: 9427 ggatccaccccatttacatttacc 9404

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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 221     ccatctgctgcagcaacatgctca 244
               ||||||||||| ||||||||||||
Sbjct: 1888302 ccatctgctgctgcaacatgctca 1888325

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>emb|AL589902.18| Mouse DNA sequence from clone RP23-108D12 on chromosome 2, complete
             sequence
          Length = 200325

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 314   acagaacacaacaccaatgtacca 337
             ||||||||||||||| ||||||||
Sbjct: 95133 acagaacacaacacctatgtacca 95156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,332,758
Number of Sequences: 3902068
Number of extensions: 6332758
Number of successful extensions: 116429
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116248
Number of HSP's gapped (non-prelim): 177
length of query: 725
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 702
effective length of database: 17,143,297,704
effective search space: 12034594988208
effective search space used: 12034594988208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result