>POLG_GBVB (Q69422) Genome polyprotein [Contains: Core protein; Envelope|
            glycoprotein E1; Envelope glycoprotein E2 (NS1); p13;
            Protease NS2-3 (EC 3.4.22.-); Serine
            protease/NTPase/helicase NS3 (EC 3.4.21.98) (EC 3.6.1.15)
            (EC 3.6.1.-) (Hepacivirin) (NS3P)
          Length = 2864

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 345  GCSSRADWLGQLC*XMLCXWVLKVLALYFNSYSLIN*SIP 226
            G +  A W+G L     C WV +VLA++F    L    +P
Sbjct: 2672 GYNPSAAWIGYLIHHYPCLWVSRVLAVHFMEQMLFEDKLP 2711

>CAC1S_RANCA (O57483) Voltage-dependent L-type calcium channel alpha-1S subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.1)
           (FGalpha1S)
          Length = 1688

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 392 DGSATCTGXKGXMGIXAALHGPIGWG--NCASXCSVXGCSKYWPSTSTVTASLTDRFR 225
           D    CTG    M + + +  P+G     C     +   ++YW S + + ASL +  R
Sbjct: 499 DSFVVCTGLLEVMLVASDIMSPLGISVLRCIRLLRIFKITRYWTSLNNLVASLLNSVR 556

>COQ5_MOUSE (Q9CXI0) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 323 GWGNCASXCSVXGCSKYWPSTSTVTASLTDRFR 225
           GW      C + GC + WP  +  T SL+   R
Sbjct: 16  GWWRATGHCRLPGCHRSWPWATLGTRSLSQEKR 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,320,924
Number of Sequences: 219361
Number of extensions: 692324
Number of successful extensions: 1492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)