ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466531.1| Oryza sativa (japonica cultivar-group), mRNA 98 3e-17
2dbj|AK072766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
3dbj|AK062238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
6dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7gb|AC098713.4| Mus musculus BAC clone RP23-2C16 from 5, complete... 42 1.6
8gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl... 40 6.4
9gb|AC015540.9|AC015540 Homo sapiens 12 BAC RP11-385G16 (Roswell ... 40 6.4

>ref|XM_466531.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1210

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427
           |||||| || ||||||||||||||||| || |||||||   |||||||||||||||||| 
Sbjct: 783 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 724

                                                        
Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472
           ||||||||| || |||| |||||   | ||||||||||||| |||
Sbjct: 723 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 679



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>dbj|AK072766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139H13, full
           insert sequence
          Length = 1210

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427
           |||||| || ||||||||||||||||| || |||||||   |||||||||||||||||| 
Sbjct: 783 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 724

                                                        
Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472
           ||||||||| || |||| |||||   | ||||||||||||| |||
Sbjct: 723 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 679



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>dbj|AK062238.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E05, full
           insert sequence
          Length = 656

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427
           |||||| || ||||||||||||||||| || |||||||   |||||||||||||||||| 
Sbjct: 227 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 168

                                                        
Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472
           ||||||||| || |||| |||||   | ||||||||||||| |||
Sbjct: 167 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 123



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 409      aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465
                |||||||||||||||||| ||||||||| || |||| |||||   | ||||||||||
Sbjct: 23147213 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 23147269



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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1126_D09
          Length = 138615

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 409    aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465
              |||||||||||||||||| ||||||||| || |||| |||||   | ||||||||||
Sbjct: 114251 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 114307



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>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1568_B05
          Length = 115325

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                     
Query: 409  aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465
            |||||||||||||||||| ||||||||| || |||| |||||   | ||||||||||
Sbjct: 4444 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 4500



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>gb|AC098713.4| Mus musculus BAC clone RP23-2C16 from 5, complete sequence
          Length = 217286

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    aatgaggctgtaactgttgaa 261
              |||||||||||||||||||||
Sbjct: 189781 aatgaggctgtaactgttgaa 189761



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>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence
          Length = 197775

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gatcagttaatgaggctgta 252
              ||||||||||||||||||||
Sbjct: 105781 gatcagttaatgaggctgta 105800



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>gb|AC015540.9|AC015540 Homo sapiens 12 BAC RP11-385G16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 133787

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     caaatgaggctctagttcat 48
              ||||||||||||||||||||
Sbjct: 106702 caaatgaggctctagttcat 106683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,735,578
Number of Sequences: 3902068
Number of extensions: 1735578
Number of successful extensions: 23076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23053
Number of HSP's gapped (non-prelim): 23
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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