ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27g23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1210 Score = 97.6 bits (49), Expect = 3e-17 Identities = 89/105 (84%) Strand = Plus / Minus Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427 |||||| || ||||||||||||||||| || ||||||| |||||||||||||||||| Sbjct: 783 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 724 Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472 ||||||||| || |||| ||||| | ||||||||||||| ||| Sbjct: 723 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 679
>dbj|AK072766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139H13, full insert sequence Length = 1210 Score = 97.6 bits (49), Expect = 3e-17 Identities = 89/105 (84%) Strand = Plus / Minus Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427 |||||| || ||||||||||||||||| || ||||||| |||||||||||||||||| Sbjct: 783 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 724 Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472 ||||||||| || |||| ||||| | ||||||||||||| ||| Sbjct: 723 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 679
>dbj|AK062238.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E05, full insert sequence Length = 656 Score = 97.6 bits (49), Expect = 3e-17 Identities = 89/105 (84%) Strand = Plus / Minus Query: 368 agcctgtgcacgttgctgatccgtccanccaaaaaattnanaaaccccaccaataccagn 427 |||||| || ||||||||||||||||| || ||||||| |||||||||||||||||| Sbjct: 227 agcctgcgctcgttgctgatccgtccagccgaaaaattccgaaaccccaccaataccagc 168 Query: 428 aagcttgaatggttgggaaccttncngntcaaagtcctcctnttc 472 ||||||||| || |||| ||||| | ||||||||||||| ||| Sbjct: 167 aagcttgaaaggctggggaccttctcgctcaaagtcctcctcttc 123
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 49/57 (85%) Strand = Plus / Plus Query: 409 aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465 |||||||||||||||||| ||||||||| || |||| ||||| | |||||||||| Sbjct: 23147213 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 23147269
>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_D09 Length = 138615 Score = 58.0 bits (29), Expect = 3e-05 Identities = 49/57 (85%) Strand = Plus / Plus Query: 409 aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465 |||||||||||||||||| ||||||||| || |||| ||||| | |||||||||| Sbjct: 114251 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 114307
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 58.0 bits (29), Expect = 3e-05 Identities = 49/57 (85%) Strand = Plus / Plus Query: 409 aaaccccaccaataccagnaagcttgaatggttgggaaccttncngntcaaagtcct 465 |||||||||||||||||| ||||||||| || |||| ||||| | |||||||||| Sbjct: 4444 aaaccccaccaataccagcaagcttgaaaggctggggaccttctcgctcaaagtcct 4500
>gb|AC098713.4| Mus musculus BAC clone RP23-2C16 from 5, complete sequence Length = 217286 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 aatgaggctgtaactgttgaa 261 ||||||||||||||||||||| Sbjct: 189781 aatgaggctgtaactgttgaa 189761
>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence Length = 197775 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gatcagttaatgaggctgta 252 |||||||||||||||||||| Sbjct: 105781 gatcagttaatgaggctgta 105800
>gb|AC015540.9|AC015540 Homo sapiens 12 BAC RP11-385G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133787 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 caaatgaggctctagttcat 48 |||||||||||||||||||| Sbjct: 106702 caaatgaggctctagttcat 106683 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,735,578 Number of Sequences: 3902068 Number of extensions: 1735578 Number of successful extensions: 23076 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23053 Number of HSP's gapped (non-prelim): 23 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
