ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27g14 |
|---|---|
| Clone Library Name | barley_pub |
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 35.8 bits (81), Expect = 0.12 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHHMASPA 425 H PHH HP ++ P +HHH S+ H AHH A+ A Sbjct: 589 HPHPHHGHPHAH--PHSHHH-ASMHHAHAHHAAAAAA 622
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 35.4 bits (80), Expect = 0.15 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H++ HH H ++ P HHH + H A HH Sbjct: 145 HEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHH 176 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%) Frame = +3 Query: 309 EAHQDPHHRHPPS-----YQRPLAHHHLVSLGHDSAHHHMA 416 E H + HH H P + P HHH LGH HHH A Sbjct: 87 EPHHEEHHHHHPHPHHHHHHHPPHHHH--HLGHHHHHHHAA 125 Score = 34.3 bits (77), Expect = 0.35 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 15/49 (30%) Frame = +3 Query: 309 EAHQDP---------------HHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 E H +P HH HPP + L HHH H +AHHH Sbjct: 83 EEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHH---HHHHAAHHH 128 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%) Frame = +3 Query: 327 HHRHPPSYQRPLAHHH----LVSLGHDSAHHH 410 HH HPP + L HHH H HHH Sbjct: 104 HHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHH 135 Score = 32.3 bits (72), Expect = 1.3 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +3 Query: 315 HQDPHHRHPPSYQRP--LAHHHLVSLGHDSAHHH 410 H++ HH HP + P HHH H HHH Sbjct: 74 HEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHH 107 Score = 32.0 bits (71), Expect = 1.7 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 291 HHDAHHHHHHHHDAHHHHHH-----HDAHHHH 317 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 320 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 347 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 310 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 337 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 281 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 308 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 271 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 298 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 261 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 288 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H + HHH HD+ HHH Sbjct: 251 HHDAHHHHHHHHDAHHHHHH----HHDAHHHH 278 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHHMA 416 H PHH H + P HHH H HHH A Sbjct: 181 HHAPHHHHH-HHHAPHHHHHHHHAPHHHHHHHHA 213 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHHMA 416 H PHH H + P HHH H HHH A Sbjct: 171 HHAPHHHH-HHHHAPHHHHHHHHAPHHHHHHHHA 203 Score = 30.8 bits (68), Expect = 3.8 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H HH H + HHH HD+ HHH Sbjct: 227 HHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHH 258 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H PHH H + HHH GH HHH Sbjct: 201 HHAPHHHH--HHHHAPHHHHHHHHGHHHHHHH 230 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H PHH H + P HHH H HHH Sbjct: 191 HHAPHHHH-HHHHAPHHHHHHHHAPHHHHHHH 221 Score = 30.4 bits (67), Expect = 5.0 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Frame = +3 Query: 306 QEAHQDPHHRHPPSYQRP--LAHHHLVSLGHDSAHH 407 + H++ HH HP + P HHH H HH Sbjct: 55 EHLHEEHHHHHPEEHHEPHHEEHHHHHPEEHHEPHH 90 Score = 30.0 bits (66), Expect = 6.5 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H D HH H HHH HD+ HHH Sbjct: 301 HHDAHHHHHHHDAHHHHHHH-----HDAHHHH 327 Score = 30.0 bits (66), Expect = 6.5 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 H PHH H + HHH GH HHH Sbjct: 211 HHAPHHHH--HHHHGHHHHHHHHHGHHHHHHH 240
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 34.3 bits (77), Expect = 0.35 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +3 Query: 315 HQDP-HHRHP-PSYQRPLAHHHLVSLGHDSAHHHMASP 422 HQ P HH HP P +Q+ HHH S H HH SP Sbjct: 139 HQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSP 176 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = +3 Query: 324 PHHRHPPSYQRPLAH-----HHLVSLGHDSAHHHM-ASPA 425 PHH +P +Q P H HH + H +H H+ A PA Sbjct: 131 PHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPA 170
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 34.3 bits (77), Expect = 0.35 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +3 Query: 315 HQDP-HHRHP-PSYQRPLAHHHLVSLGHDSAHHHMASP 422 HQ P HH HP P +Q+ HHH S H HH SP Sbjct: 294 HQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSP 331 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = +3 Query: 324 PHHRHPPSYQRPLAH-----HHLVSLGHDSAHHHM-ASPA 425 PHH +P +Q P H HH + H +H H+ A PA Sbjct: 286 PHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPA 325
>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) Length = 323 Score = 33.1 bits (74), Expect = 0.77 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +3 Query: 252 ALLPQKDVMEDCRAVNRIQEAHQDPHHRHP-PSYQRP---LAHHHLVSLGH-DSAHHHMA 416 AL+ V + ++ + + AH HH HP P + P +AH L H HHH A Sbjct: 110 ALIGSHPVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQA 169 Query: 417 SP 422 SP Sbjct: 170 SP 171
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 32.7 bits (73), Expect = 1.0 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 315 HQDPHHRHPP---SYQRPLAHHHLVSLGHDSAHHHMASPA 425 HQ HH+HP S+Q P H H H SA H+ +P+ Sbjct: 205 HQHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPS 244
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +3 Query: 306 QEAHQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHHMASPAL 428 Q+ H H H AHHHL H ++HHH A P L Sbjct: 24 QQQHLQQLHHH--------AHHHLPQPLHTTSHHHSAHPHL 56
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +3 Query: 327 HHRHPPSYQRPLAHHHLVSLGHDSAHHHMASPALL--*CCCAEGHSNQTL 470 H R P SY + H S H S+H H +SP C AEG S++T+ Sbjct: 448 HSRSPSSYS---SSHSSSSSSHSSSHSHASSPVQSSGNCAMAEGRSSRTV 494
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +3 Query: 297 NRIQEAHQDPHHRH-PPSYQRPLAHHHL--VSLGHDSAHHH 410 +++Q+ HQ H H S+ HHHL +GH HHH Sbjct: 507 HQLQQQHQQEQHHHLTLSHHHQEQHHHLGHHHMGHHHHHHH 547
>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) (Transcription factor MAF1) Length = 323 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +3 Query: 252 ALLPQKDVMEDCRAVNRIQEAHQDPHHRHP-PSYQRP---LAHHHLVSLGH-DSAHHHMA 416 AL+ V + ++ + + AH HH HP P + P + H L H HHH A Sbjct: 110 ALIGSHPVPQPLQSFDGFRSAHHHHHHHHPHPHHGYPGAGVTHDELGPHAHPHHHHHHQA 169 Query: 417 SP 422 SP Sbjct: 170 SP 171
>MAFB_MOUSE (P54841) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) (Transcription factor MAF1) (Segmentation protein KR) (Kreisler) Length = 323 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +3 Query: 252 ALLPQKDVMEDCRAVNRIQEAHQDPHHRHP-PSYQRP---LAHHHLVSLGH-DSAHHHMA 416 AL+ V + ++ + + AH HH HP P + P + H L H HHH A Sbjct: 110 ALIGSHPVPQPLQSFDGFRSAHHHHHHHHPHPHHGYPGAGVTHDDLGQHAHPHHHHHHQA 169 Query: 417 SP 422 SP Sbjct: 170 SP 171
>HYPB_BRAJA (Q45257) Hydrogenase nickel incorporation protein hypB| Length = 302 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 303 IQEAHQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHH 410 I+ AH D HH H + HH GHD HHH Sbjct: 14 IEHAH-DHHHDHGHDHDHGHDGHHHHHHGHDQDHHH 48
>ADD4_STRCO (Q9L0L6) Probable adenosine deaminase 4 (EC 3.5.4.4) (Adenosine| aminohydrolase 4) Length = 343 Score = 30.4 bits (67), Expect = 5.0 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = -3 Query: 468 GFGLSDLQRSSIIVKQEKPCDDGQNHAQVK-PNGGELVGAGSLGDADDEDPDVPPGFG*R 292 GFGLS+ +R + ++ ++ + P+GGEL G S+ D D+ G G R Sbjct: 172 GFGLSNDERRGMARDFDRAFAIARDGGLLSAPHGGELTGPASVRDCLDDLEADRIGHGVR 231 Query: 291 LCNLP*HLSVAATREKICACC 229 P L A R+ C C Sbjct: 232 AAEDPRLLKRLADRQVTCEVC 252
>DNAJ_BACLD (Q65H55) Chaperone protein dnaJ| Length = 375 Score = 30.0 bits (66), Expect = 6.5 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -2 Query: 250 REDLCLLLERCSCSYDEPGVMKVTCTFCDGGNCQSSCALGFSFVVLIRRHIDNRLNVFPK 71 RE+ C E CS S +PG TC+ C GG+ Q + F ++ R + + N K Sbjct: 141 REETC---ETCSGSGAKPGTKPETCSHC-GGSGQLNMEQSTPFGKVVNRRVCHYCNGTGK 196 Query: 70 QL 65 Q+ Sbjct: 197 QI 198
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 30.0 bits (66), Expect = 6.5 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 220 CSCSYDEPGVMKVTCTFCDGGNCQSSCALGFSFVV 116 C+C+ E VM + C C+ SC GF++V+ Sbjct: 2451 CTCTDMEDAVMGLRVAQCSQKPCEDSCRSGFTYVL 2485
>OTX1_BRARE (Q91994) Homeobox protein OTX1 (ZOTX1)| Length = 323 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Frame = +3 Query: 282 DCRAVNRIQEAHQDPHHRHP--PSYQRPLAHHHLV-SLGHDSAHHHMA 416 DC + +H PH P S HHH+ S GH HHH A Sbjct: 229 DCGSYLAPMHSHHHPHQLSPMTASSMPTHPHHHISQSSGHHHHHHHQA 276
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 306 QEAHQDPHHRH--PPSYQRPLAHHHLVSLGHDSAHHH 410 Q HQ HH H ++Q P H + G D AHHH Sbjct: 76 QAPHQAHHHHHHGEVNHQAPQVHQQV--HGQDQAHHH 110
>OTX1_RAT (Q63410) Homeobox protein OTX1| Length = 355 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Frame = +3 Query: 282 DCRAVNRIQEAHQDPHHRHP--PS------YQRPLAHHHL-VSLGHDSAHHH 410 DC + +H PH P PS + P AHH L S GH HHH Sbjct: 247 DCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHH 298
>OTX1_MOUSE (P80205) Homeobox protein OTX1| Length = 355 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Frame = +3 Query: 282 DCRAVNRIQEAHQDPHHRHP--PS------YQRPLAHHHL-VSLGHDSAHHH 410 DC + +H PH P PS + P AHH L S GH HHH Sbjct: 247 DCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHH 298
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 306 QEAHQDPHHRH--PPSYQRPLAHHHLVSLGHDSAHHH 410 Q HQ HH H ++Q P H + G D AHHH Sbjct: 76 QAPHQAHHHHHHGEVNHQAPQVHQQV--HGQDQAHHH 110
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 306 QEAHQDPHHRH--PPSYQRPLAHHHLVSLGHDSAHHH 410 Q HQ HH H ++Q P H + G D AHHH Sbjct: 80 QAPHQAHHHHHHGEVNHQAPQVHQQV--HGQDQAHHH 114
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = +3 Query: 315 HQDPHHRHPPSYQRPLAHHHLVSLGHDSAHHHMASP 422 H PHH H + HHH H HHH P Sbjct: 135 HLHPHHPHHAHHH----HHHHHHAAHHHHHHHPPQP 166
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 29.6 bits (65), Expect = 8.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 309 EAHQDPHHRHPPSYQRP 359 E+ DPHHR PSY+RP Sbjct: 859 ESSFDPHHRAQPSYERP 875
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Frame = +3 Query: 282 DCRAVNRIQEAHQDPHHRHP--PS------YQRPLAHHHL-VSLGHDSAHHH 410 DC + +H PH P PS + P AHH L S GH HHH Sbjct: 247 DCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHH 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,919,639 Number of Sequences: 219361 Number of extensions: 1862197 Number of successful extensions: 5481 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5362 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
