ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 741 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 431 atgatgctgctgcgctgaaggtcactcaaaccaaaccctggtggttcctctggatcatca 490 |||||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct: 605 atgatgttgctgcgctgatgatcactgaaaccaaatcctggtggttcctctggatcatca 546 Query: 491 tcttccacctggacagaaacaggagctggtgcttttgctgg 531 ||||||| |||||| | ||||| || || |||||||||||| Sbjct: 545 tcttccagctggactgcaacagaagttgatgcttttgctgg 505 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 295 ttaaccgaatccaggaggcacatcaggatcctcatcatcggcatcccc 342 |||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct: 741 ttaaccaaacccaggaggcacatcaggatcctcctcatcatcatcccc 694 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 gctcaccaccatttggtttcacttgggcatgattct 398 ||||||| ||||||||||||||||| |||||||| Sbjct: 673 gctcaccttcatttggtttcacttggttatgattct 638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 431 atgatgctgctgcgctgaaggtcactcaaaccaaaccctggtggttcctctggatcatca 490 |||||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct: 6758086 atgatgttgctgcgctgatgatcactgaaaccaaatcctggtggttcctctggatcatca 6758027 Query: 491 tcttccacctggacagaaacaggagctggtgcttttgctgg 531 ||||||| |||||| | ||||| || || |||||||||||| Sbjct: 6758026 tcttccagctggactgcaacagaagttgatgcttttgctgg 6757986 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 294 gttaaccgaatccaggaggcacatcaggatcctcatcatcggcatcccc 342 ||||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct: 6758223 gttaaccaaacccaggaggcacatcaggatcctcctcatcatcatcccc 6758175 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 gctcaccaccatttggtttcacttgggcatgattct 398 ||||||| ||||||||||||||||| |||||||| Sbjct: 6758154 gctcaccttcatttggtttcacttggttatgattct 6758119
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 431 atgatgctgctgcgctgaaggtcactcaaaccaaaccctggtggttcctctggatcatca 490 |||||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct: 66659 atgatgttgctgcgctgatgatcactgaaaccaaatcctggtggttcctctggatcatca 66718 Query: 491 tcttccacctggacagaaacaggagctggtgcttttgctgg 531 ||||||| |||||| | ||||| || || |||||||||||| Sbjct: 66719 tcttccagctggactgcaacagaagttgatgcttttgctgg 66759 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 294 gttaaccgaatccaggaggcacatcaggatcctcatcatcggcatcccc 342 ||||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct: 66522 gttaaccaaacccaggaggcacatcaggatcctcctcatcatcatcccc 66570 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 363 gctcaccaccatttggtttcacttgggcatgattct 398 ||||||| ||||||||||||||||| |||||||| Sbjct: 66591 gctcaccttcatttggtttcacttggttatgattct 66626
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 431 atgatgctgctgcgctgaaggtcactcaaaccaaaccctggtggttcctctggatcatca 490 |||||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct: 6757299 atgatgttgctgcgctgatgatcactgaaaccaaatcctggtggttcctctggatcatca 6757240 Query: 491 tcttccacctggacagaaacaggagctggtgcttttgctgg 531 ||||||| |||||| | ||||| || || |||||||||||| Sbjct: 6757239 tcttccagctggactgcaacagaagttgatgcttttgctgg 6757199 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 294 gttaaccgaatccaggaggcacatcaggatcctcatcatcggcatcccc 342 ||||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct: 6757436 gttaaccaaacccaggaggcacatcaggatcctcctcatcatcatcccc 6757388 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 gctcaccaccatttggtttcacttgggcatgattct 398 ||||||| ||||||||||||||||| |||||||| Sbjct: 6757367 gctcaccttcatttggtttcacttggttatgattct 6757332
>dbj|AK101799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066F19, full insert sequence Length = 1024 Score = 113 bits (57), Expect = 8e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 431 atgatgctgctgcgctgaaggtcactcaaaccaaaccctggtggttcctctggatcatca 490 |||||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct: 692 atgatgttgctgcgctgatgatcactgaaaccaaatcctggtggttcctctggatcatca 633 Query: 491 tcttccacctggacagaaacaggagctggtgcttttgctgg 531 ||||||| |||||| | ||||| || || |||||||||||| Sbjct: 632 tcttccagctggactgcaacagaagttgatgcttttgctgg 592 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 294 gttaaccgaatccaggaggcacatcaggatcctcatcatcggcatcccc 342 ||||||| || ||||||||||||||||||||||| ||||| ||||||| Sbjct: 829 gttaaccaaacccaggaggcacatcaggatcctcctcatcatcatcccc 781 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 gctcaccaccatttggtttcacttgggcatgattct 398 ||||||| ||||||||||||||||| |||||||| Sbjct: 760 gctcaccttcatttggtttcacttggttatgattct 725
>ref|XM_455594.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11297g predicted mRNA Length = 1482 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 361 tagctcaccaccatttggtttcacttg 387 |||||||||| |||||||||||||||| Sbjct: 866 tagctcaccaacatttggtttcacttg 892
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 361 tagctcaccaccatttggtttcacttg 387 |||||||||| |||||||||||||||| Sbjct: 1040664 tagctcaccaacatttggtttcacttg 1040638
>gb|AF522437.1| Thymallus thymallus haplotype At13 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>gb|AF522436.1| Thymallus thymallus haplotype At12 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1098 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>gb|AF522435.1| Thymallus thymallus haplotype At11 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>gb|AF522434.1| Thymallus thymallus haplotype At10 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>gb|AF522404.1| Thymallus thymallus haplotype Da10 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>gb|AF522403.1| Thymallus thymallus haplotype Da9 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 tctccttttctatttcccttcagctt 567 ||||||||||| |||||||||||||| Sbjct: 624 tctccttttctttttcccttcagctt 649
>ref|NM_106322.2| Arabidopsis thaliana GTP binding / translation initiation factor AT1G76720 mRNA, complete cds Length = 3606 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 tcatcttccacctggacagaa 508 ||||||||||||||||||||| Sbjct: 1487 tcatcttccacctggacagaa 1467
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 atcaggatcctcatcatcggcatcc 340 ||||||| ||||||||||||||||| Sbjct: 3745897 atcaggaacctcatcatcggcatcc 3745873
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4647966 ccttttctatttcccttcagc 4647986
>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence Length = 181437 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gcacatcaggatcctcatcat 332 ||||||||||||||||||||| Sbjct: 110597 gcacatcaggatcctcatcat 110577
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4644451 ccttttctatttcccttcagc 4644471
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4645547 ccttttctatttcccttcagc 4645567
>ref|XM_388845.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08669.1) partial mRNA Length = 2400 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cccatcatcacatggcttctc 420 ||||||||||||||||||||| Sbjct: 2008 cccatcatcacatggcttctc 2028
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4710970 ccttttctatttcccttcagc 4710990
>ref|XM_788808.1| PREDICTED: Strongylocentrotus purpuratus similar to transient receptor protein 5 (LOC589158), mRNA Length = 2862 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 aggcacatcaggatcctcatc 330 ||||||||||||||||||||| Sbjct: 2733 aggcacatcaggatcctcatc 2713
>emb|AL136962.19| Human DNA sequence from clone RP11-273F15 on chromosome 13 Contains a pseudogene similar to part of NADH dehydrogenase 3 (NADH dehydrogenase, subunit 3 (complex I)) (MTND3) and a non-metastatic cells 1, protein (NM23A) expressed in (NME1)(NM23, NM23-H1) pseudogene, complete sequence Length = 165655 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 tcatcatcttccacctggaca 505 ||||||||||||||||||||| Sbjct: 17099 tcatcatcttccacctggaca 17119
>ref|XM_780775.1| PREDICTED: Strongylocentrotus purpuratus similar to Short transient receptor potential channel 4 (TrpC4) (trp-related protein 4) (hTrp-4) (hTrp4) (LOC580737), mRNA Length = 2085 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 aggcacatcaggatcctcatc 330 ||||||||||||||||||||| Sbjct: 1956 aggcacatcaggatcctcatc 1936
>emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on chromosome 13 Contains the Agtr1a gene for angiotensin receptor 1a, a novel pseudogene and a CpG island, complete sequence Length = 172871 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 tgtcaatatgtcttctgatta 114 ||||||||||||||||||||| Sbjct: 151661 tgtcaatatgtcttctgatta 151641
>ref|NM_133124.1| Drosophila melanogaster CG7502-RA (CG7502), mRNA Length = 3192 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 gcacatcaggatcctcatcat 332 ||||||||||||||||||||| Sbjct: 800 gcacatcaggatcctcatcat 820
>gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28O16 genomic sequence, complete sequence Length = 87684 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tcatcttccacctggacagaa 508 ||||||||||||||||||||| Sbjct: 34027 tcatcttccacctggacagaa 34047
>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete sequence Length = 297969 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gcacatcaggatcctcatcat 332 ||||||||||||||||||||| Sbjct: 98979 gcacatcaggatcctcatcat 98959
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4791584 ccttttctatttcccttcagc 4791604
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4644324 ccttttctatttcccttcagc 4644344
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ccttttctatttcccttcagc 565 ||||||||||||||||||||| Sbjct: 4638593 ccttttctatttcccttcagc 4638613
>ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctggatcatcatcttccac 498 |||||||||||||||||||| Sbjct: 383 tctggatcatcatcttccac 364
>ref|XM_614634.2| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 3 (caV1.3), mRNA Length = 6500 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5015 ttcctctggatcatcatctt 4996
>ref|XM_876930.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 19 (caV1.3), mRNA Length = 6557 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5072 ttcctctggatcatcatctt 5053
>ref|XM_876859.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 18 (caV1.3), mRNA Length = 6476 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 4991 ttcctctggatcatcatctt 4972
>ref|XM_876800.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 17 (caV1.3), mRNA Length = 6560 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5075 ttcctctggatcatcatctt 5056
>ref|XM_876741.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 16 (caV1.3), mRNA Length = 6512 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5027 ttcctctggatcatcatctt 5008
>ref|XM_865676.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 4 (caV1.3), mRNA Length = 6617 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5132 ttcctctggatcatcatctt 5113
>ref|XM_876627.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 15 (caV1.3), mRNA Length = 6557 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5072 ttcctctggatcatcatctt 5053
>ref|XM_876565.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 14 (caV1.3), mRNA Length = 6602 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5117 ttcctctggatcatcatctt 5098
>ref|XM_876506.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 13 (caV1.3), mRNA Length = 6617 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5132 ttcctctggatcatcatctt 5113
>ref|XM_876442.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 12 (caV1.3), mRNA Length = 6572 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5087 ttcctctggatcatcatctt 5068
>ref|XM_876386.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 11 (caV1.3), mRNA Length = 6572 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5087 ttcctctggatcatcatctt 5068
>ref|XM_876321.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 10 (caV1.3), mRNA Length = 6632 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5147 ttcctctggatcatcatctt 5128
>ref|XM_876260.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 9 (caV1.3), mRNA Length = 6674 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5186 ttcctctggatcatcatctt 5167
>ref|XM_876194.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 8 (caV1.3), mRNA Length = 6701 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5216 ttcctctggatcatcatctt 5197
>ref|XM_876136.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 7 (caV1.3), mRNA Length = 5849 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5159 ttcctctggatcatcatctt 5140
>ref|XM_876073.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 6 (caV1.3), mRNA Length = 6707 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5222 ttcctctggatcatcatctt 5203
>ref|XM_875996.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 5 (caV1.3), mRNA Length = 6548 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttcctctggatcatcatctt 494 |||||||||||||||||||| Sbjct: 5063 ttcctctggatcatcatctt 5044
>ref|XM_416232.1| PREDICTED: Gallus gallus similar to Rotavirus X associated non-structural protein (RoXaN) (LOC417994), mRNA Length = 671 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 gaagcttgctctccttttct 552 |||||||||||||||||||| Sbjct: 489 gaagcttgctctccttttct 470
>gb|AC091268.2| Rattus norvegicus strain Brown Norway clone RP31-536L14, complete sequence Length = 148631 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 gacagaaacaggagctggtgcttt 525 ||||||||||||||||||| |||| Sbjct: 1804 gacagaaacaggagctggttcttt 1781
>gb|AC090444.2| Rattus norvegicus strain Brown Norway clone RP31-210K23, complete sequence Length = 37897 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 gacagaaacaggagctggtgcttt 525 ||||||||||||||||||| |||| Sbjct: 32846 gacagaaacaggagctggttcttt 32823
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence Length = 262483 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 gaagcttgctctccttttctattt 556 ||||||| |||||||||||||||| Sbjct: 201297 gaagctttctctccttttctattt 201320
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 580 ccctgtgtcctgttgctgtt 599 |||||||||||||||||||| Sbjct: 75740 ccctgtgtcctgttgctgtt 75721
>gb|AC137948.12| Mus musculus chromosome 1, clone RP23-393D20, complete sequence Length = 233077 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 aaagctaaagccaagggcgc 141 |||||||||||||||||||| Sbjct: 9787 aaagctaaagccaagggcgc 9768
>emb|CR732975.2|CNS0GSH9 Tetraodon nigroviridis full-length cDNA Length = 1497 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1434 gggaaaacatttagcctcttgtca 1411
>emb|CR732261.2|CNS0GRYI Tetraodon nigroviridis full-length cDNA Length = 1508 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1445 gggaaaacatttagcctcttgtca 1422
>emb|CR732173.2|CNS0GRW2 Tetraodon nigroviridis full-length cDNA Length = 1497 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1434 gggaaaacatttagcctcttgtca 1411
>emb|CR729643.1|CNS0GPXT Tetraodon nigroviridis full-length cDNA Length = 1411 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1355 gggaaaacatttagcctcttgtca 1332
>gb|AC107842.13| Mus musculus chromosome 1, clone RP23-304O9, complete sequence Length = 215781 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aaagctaaagccaagggcgc 141 |||||||||||||||||||| Sbjct: 80283 aaagctaaagccaagggcgc 80302
>emb|CR707919.2|CNS0G96J Tetraodon nigroviridis full-length cDNA Length = 497 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 434 gggaaaacatttagcctcttgtca 411
>emb|CR705922.2|CNS0G7N2 Tetraodon nigroviridis full-length cDNA Length = 1287 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1224 gggaaaacatttagcctcttgtca 1201
>gb|AC113126.10| Mus musculus chromosome 6, clone RP23-352D5, complete sequence Length = 176364 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 attgtttggggaaaacattt 86 |||||||||||||||||||| Sbjct: 28100 attgtttggggaaaacattt 28081
>emb|CR651955.2|CNS0F20P Tetraodon nigroviridis full-length cDNA Length = 1393 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gggaaaacatttagcctattgtca 98 ||||||||||||||||| |||||| Sbjct: 1341 gggaaaacatttagcctcttgtca 1318
>gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, complete sequence Length = 164548 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ctccttttctatttcccttc 562 |||||||||||||||||||| Sbjct: 108697 ctccttttctatttcccttc 108716
>emb|Z82195.2|HS274L7 Human DNA sequence from clone RP1-274L7 on chromosome X Contains a novel gene and a novel gene similar to uncharacterized hypothalamus protein HT011, complete sequence Length = 119566 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 536 gcttgctctccttttctatttccc 559 |||| ||||||||||||||||||| Sbjct: 54157 gctttctctccttttctatttccc 54134
>emb|AL391139.19| Human DNA sequence from clone RP11-353K22 on chromosome X Contains the gene for a novel GTPase and two CpG islands, complete sequence Length = 128899 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 gaagcttgctctccttttctattt 556 ||||||| |||||||||||||||| Sbjct: 3953 gaagctttctctccttttctattt 3930
>emb|AL390239.16| Human DNA sequence from clone RP11-58J3 on chromosome 9 Contains part of the PCA3 gene for prostate cancer antigen 3 (DD3), a novel gene (LOC158471) and a CpG island, complete sequence Length = 129109 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aattgtttggggaaaacatt 85 |||||||||||||||||||| Sbjct: 49801 aattgtttggggaaaacatt 49820
>emb|AL354889.14| Human DNA sequence from clone RP11-290F20 on chromosome 20 Contains three novel genes, complete sequence Length = 160311 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 catcatcttccacctggaca 505 |||||||||||||||||||| Sbjct: 119464 catcatcttccacctggaca 119483
>emb|AL031665.19|HS545L17 Human DNA sequence from clone RP4-545L17 on chromosome 20p12.2-13 Contains the 5' end of the RAD21L1 gene for RAD21-like 1 (S. pombe), the C20orf46 gene, a novel gene, the PSMF1 gene for proteasome (prosome, macropain) inhibitor subunit 1 (PI31), the ACTGP3 gene for gamma actin pseudogene 3 and three CpG islands, complete sequence Length = 145437 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 gatatcagtttcacctgact 662 |||||||||||||||||||| Sbjct: 10103 gatatcagtttcacctgact 10122
>gb|AC113633.5| Rattus norvegicus 4 BAC CH230-350N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 133392 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 gacagaaacaggagctggtgcttt 525 ||||||||||||||||||| |||| Sbjct: 103518 gacagaaacaggagctggttcttt 103541
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctggatcatcatcttccac 498 |||||||||||||||||||| Sbjct: 5554 tctggatcatcatcttccac 5535
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctggatcatcatcttccac 498 |||||||||||||||||||| Sbjct: 111373 tctggatcatcatcttccac 111354
>emb|BX957307.12| Zebrafish DNA sequence from clone CH211-117E20 in linkage group 6, complete sequence Length = 171645 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ctctggatcatcatcttcca 497 |||||||||||||||||||| Sbjct: 39903 ctctggatcatcatcttcca 39884
>emb|BX530064.8| Zebrafish DNA sequence from clone CH211-232M19 in linkage group 16, complete sequence Length = 153572 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 tgctctccttttctatttcc 558 |||||||||||||||||||| Sbjct: 71934 tgctctccttttctatttcc 71915
>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence Length = 185437 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ggatcatcatcttccacctg 501 |||||||||||||||||||| Sbjct: 18448 ggatcatcatcttccacctg 18429
>emb|BX510932.8| Zebrafish DNA sequence from clone DKEY-188M6 in linkage group 21, complete sequence Length = 156832 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 aacaaaatatgccacaatct 61 |||||||||||||||||||| Sbjct: 60645 aacaaaatatgccacaatct 60626
>gb|AC149092.6| Pan troglodytes BAC clone CH251-553I6 from chromosome 7, complete sequence Length = 194702 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 catcatcttccacctggaca 505 |||||||||||||||||||| Sbjct: 145230 catcatcttccacctggaca 145249
>gb|DQ274179.2| Solanum tuberosum patatin-rich BAC 14K07, complete sequence Length = 154382 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 caaaatatgccacaatctactcaa 67 |||||||||| ||||||||||||| Sbjct: 21225 caaaatatgcaacaatctactcaa 21202
>gb|AC012390.6| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR30L17, complete sequence Length = 174441 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 tggacagaaacaggagctgg 519 |||||||||||||||||||| Sbjct: 102700 tggacagaaacaggagctgg 102719
>gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, complete sequence Length = 178105 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 catcatcttccacctggaca 505 |||||||||||||||||||| Sbjct: 100088 catcatcttccacctggaca 100069
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 382 cacttgggcatgattctgcccatcatca 409 |||||||| ||||||||||| ||||||| Sbjct: 4805 cacttgggtatgattctgcctatcatca 4778
>gb|AC010667.10|AC010667 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR40P19, complete sequence Length = 159570 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 tggacagaaacaggagctgg 519 |||||||||||||||||||| Sbjct: 41561 tggacagaaacaggagctgg 41580
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctggatcatcatcttccac 498 |||||||||||||||||||| Sbjct: 27842701 tctggatcatcatcttccac 27842682
>gb|AC007356.8|AC007356 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR24H09, complete sequence Length = 189557 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 caattgtttggggaaaacat 84 |||||||||||||||||||| Sbjct: 81181 caattgtttggggaaaacat 81200
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 gacagaaacaggagctggtgcttt 525 ||||||||||||||||||| |||| Sbjct: 1207268 gacagaaacaggagctggttcttt 1207245
>gb|AC026303.25| Homo sapiens 3 BAC RP11-581D23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 35018 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 aaccgaatccaggaggcacatcag 320 ||||||||||||||| |||||||| Sbjct: 32296 aaccgaatccaggagccacatcag 32273
>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence Length = 206074 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 cttttctatttcccttcagc 565 |||||||||||||||||||| Sbjct: 28890 cttttctatttcccttcagc 28871
>gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence Length = 208310 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 538 ttgctctccttttctatttccctt 561 ||||||||||||||| |||||||| Sbjct: 120441 ttgctctccttttctttttccctt 120464
>gb|AF543423.1| Oregus crypticus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 761 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ttctcctgctttactatgat 435 |||||||||||||||||||| Sbjct: 248 ttctcctgctttactatgat 267
>emb|AL928979.4| Zebrafish DNA sequence from clone DKEY-113G17, complete sequence Length = 193205 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctcagaaaacaaaatatgcc 54 |||||||||||||||||||| Sbjct: 157336 ctcagaaaacaaaatatgcc 157355
>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full insert sequence Length = 1499 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctggatcatcatcttccac 498 |||||||||||||||||||| Sbjct: 551 tctggatcatcatcttccac 532
>emb|BX663502.9| Zebrafish DNA sequence from clone CH211-202C21 in linkage group 18, complete sequence Length = 188674 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctcagaaaacaaaatatgcc 54 |||||||||||||||||||| Sbjct: 130694 ctcagaaaacaaaatatgcc 130713
>gb|AE003822.3| Drosophila melanogaster chromosome 2R, section 28 of 73 of the complete sequence Length = 233148 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 caattgtttggggaaaacat 84 |||||||||||||||||||| Sbjct: 219192 caattgtttggggaaaacat 219211
>gb|AE003844.5| Drosophila melanogaster chromosome 4, section 2 of 5 of the complete sequence Length = 315846 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 tggacagaaacaggagctgg 519 |||||||||||||||||||| Sbjct: 242994 tggacagaaacaggagctgg 242975
>gb|AC148935.6| Pan troglodytes BAC clone CH251-485J2 from chromosome 7, complete sequence Length = 215177 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 catcatcttccacctggaca 505 |||||||||||||||||||| Sbjct: 156843 catcatcttccacctggaca 156862
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 cacatggcttctcctgcttt 427 |||||||||||||||||||| Sbjct: 14360 cacatggcttctcctgcttt 14379
>emb|AL772139.9| Mouse DNA sequence from clone RP23-8O24 on chromosome 4, complete sequence Length = 109835 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccactagctcaccaccattt 376 |||||||||||||||||||| Sbjct: 78225 ccactagctcaccaccattt 78206
>emb|AL672194.1| Mouse DNA sequence from clone RP23-73P3 on chromosome 13, complete sequence Length = 173598 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 382 cacttgggcatgattctgcccatcatca 409 |||||||| ||||||||||| ||||||| Sbjct: 84210 cacttgggtatgattctgcctatcatca 84183
>dbj|D86993.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:23C6 Length = 39752 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 cacatggcttctcctgcttt 427 |||||||||||||||||||| Sbjct: 21519 cacatggcttctcctgcttt 21538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,685,093 Number of Sequences: 3902068 Number of extensions: 6685093 Number of successful extensions: 139499 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138908 Number of HSP's gapped (non-prelim): 586 length of query: 665 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 642 effective length of database: 17,143,297,704 effective search space: 11005997125968 effective search space used: 11005997125968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
