ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473919.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4887 Score = 321 bits (162), Expect = 2e-84 Identities = 350/412 (84%), Gaps = 3/412 (0%) Strand = Plus / Minus Query: 288 atttgatcccagtcaatagacccgtggttttcaaaactgtaaccaggttgccg---acgg 344 ||||| |||||||||||||| | || |||||||||| | |||| |||||| | |||| Sbjct: 4883 atttggtcccagtcaatagaactgttgttttcaaaattataacttggttgctgtagacgg 4824 Query: 345 ttgcgacccagtttgctcatcgtggcgaggccttcgatgactttgtaaagtgacgaccac 404 |||||||||| | ||||||| |||| || ||||| ||||||||||| || || |||||| Sbjct: 4823 ttgcgacccaatcggctcatcatggcaagtccttccatgactttgtatagcgatgaccac 4764 Query: 405 cacctatcaggtggaacctgatactcagtgagtgactcctcgatttcggtgttgtgcttc 464 |||||||||| |||||||| ||||| || ||||| || || |||||||||||||||||| Sbjct: 4763 cacctatcagatggaacctcatactgagcgagtgtatcatcaatttcggtgttgtgcttc 4704 Query: 465 ccttcaaggacgctctgcagggtgattactgcgtcctttgttttcctgaggatgctgttt 524 ||||| ||||| |||| || ||||||||||| ||||||||||||||||||||| ||||| Sbjct: 4703 ccttcgaggacattctgtagagtgattactgcatcctttgttttcctgaggatgttgttt 4644 Query: 525 ccctcggcaacctccaacgagagaaggtcactgtgggatgacgcgaggctagcagcaagc 584 ||||| ||| |||||| | |||||||||||||| || || || |||||||| |||||| Sbjct: 4643 ccctcagcagcctccagtgcaagaaggtcactgtgtgaagaggcaaggctagcggcaagc 4584 Query: 585 gcaaactgggcagcaacagcccatcggttcgacgcagcccatttcctctgaatatcttgc 644 |||||||| |||||||||||||||||||| || || |||| |||||||| ||||||||| Sbjct: 4583 gcaaactgcgcagcaacagcccatcggttagatgctacccacttcctctggatatcttgc 4524 Query: 645 aacttactttcttcctttcgcagcctctcttcaccattcccaagcacaagag 696 | ||| |||||||||||||||| |||||| ||||||| ||||| ||||||| Sbjct: 4523 atcttgctttcttcctttcgcaacctctcctcaccatccccaaatacaagag 4472
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 289 bits (146), Expect = 6e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 375 ccttcgatgactttgtaaagtgacgaccaccacctatcaggtggaacctgatactcagtg 434 ||||| ||||||||||| || || |||||||||||||||| |||||||| ||||| || | Sbjct: 115347 ccttccatgactttgtatagcgatgaccaccacctatcagatggaacctcatactgagcg 115406 Query: 435 agtgactcctcgatttcggtgttgtgcttcccttcaaggacgctctgcagggtgattact 494 |||| || || ||||||||||||||||||||||| ||||| |||| || ||||||||| Sbjct: 115407 agtgtatcatcaatttcggtgttgtgcttcccttcgaggacattctgtagagtgattact 115466 Query: 495 gcgtcctttgttttcctgaggatgctgtttccctcggcaacctccaacgagagaaggtca 554 || ||||||||||||||||||||| |||||||||| ||| |||||| | ||||||||| Sbjct: 115467 gcatcctttgttttcctgaggatgttgtttccctcagcagcctccagtgcaagaaggtca 115526 Query: 555 ctgtgggatgacgcgaggctagcagcaagcgcaaactgggcagcaacagcccatcggttc 614 ||||| || || || |||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 115527 ctgtgtgaagaggcaaggctagcggcaagcgcaaactgcgcagcaacagcccatcggtta 115586 Query: 615 gacgcagcccatttcctctgaatatcttgcaacttactttcttcctttcgcagcctctct 674 || || |||| |||||||| |||||||||| ||| |||||||||||||||| |||||| Sbjct: 115587 gatgctacccacttcctctggatatcttgcatcttgctttcttcctttcgcaacctctcc 115646 Query: 675 tcaccattcccaagcacaagag 696 ||||||| ||||| ||||||| Sbjct: 115647 tcaccatccccaaatacaagag 115668 Score = 40.1 bits (20), Expect = 9.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 288 atttgatcccagtcaatagacccgtggttttcaaaactgtaaccaggttgccg---acgg 344 ||||| |||||||||||||| | || |||||||||| | |||| |||||| | |||| Sbjct: 114883 atttggtcccagtcaatagaactgttgttttcaaaattataacttggttgctgtagacgg 114942 Query: 345 ttgcgaccca 354 |||||||||| Sbjct: 114943 ttgcgaccca 114952
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 289 bits (146), Expect = 6e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 375 ccttcgatgactttgtaaagtgacgaccaccacctatcaggtggaacctgatactcagtg 434 ||||| ||||||||||| || || |||||||||||||||| |||||||| ||||| || | Sbjct: 31537664 ccttccatgactttgtatagcgatgaccaccacctatcagatggaacctcatactgagcg 31537723 Query: 435 agtgactcctcgatttcggtgttgtgcttcccttcaaggacgctctgcagggtgattact 494 |||| || || ||||||||||||||||||||||| ||||| |||| || ||||||||| Sbjct: 31537724 agtgtatcatcaatttcggtgttgtgcttcccttcgaggacattctgtagagtgattact 31537783 Query: 495 gcgtcctttgttttcctgaggatgctgtttccctcggcaacctccaacgagagaaggtca 554 || ||||||||||||||||||||| |||||||||| ||| |||||| | ||||||||| Sbjct: 31537784 gcatcctttgttttcctgaggatgttgtttccctcagcagcctccagtgcaagaaggtca 31537843 Query: 555 ctgtgggatgacgcgaggctagcagcaagcgcaaactgggcagcaacagcccatcggttc 614 ||||| || || || |||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 31537844 ctgtgtgaagaggcaaggctagcggcaagcgcaaactgcgcagcaacagcccatcggtta 31537903 Query: 615 gacgcagcccatttcctctgaatatcttgcaacttactttcttcctttcgcagcctctct 674 || || |||| |||||||| |||||||||| ||| |||||||||||||||| |||||| Sbjct: 31537904 gatgctacccacttcctctggatatcttgcatcttgctttcttcctttcgcaacctctcc 31537963 Query: 675 tcaccattcccaagcacaagag 696 ||||||| ||||| ||||||| Sbjct: 31537964 tcaccatccccaaatacaagag 31537985 Score = 40.1 bits (20), Expect = 9.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 288 atttgatcccagtcaatagacccgtggttttcaaaactgtaaccaggttgccg---acgg 344 ||||| |||||||||||||| | || |||||||||| | |||| |||||| | |||| Sbjct: 31537200 atttggtcccagtcaatagaactgttgttttcaaaattataacttggttgctgtagacgg 31537259 Query: 345 ttgcgaccca 354 |||||||||| Sbjct: 31537260 ttgcgaccca 31537269
>emb|AJ535215.1|OSA535215 Oryza sativa (japonica cultivar-group) mrp1 gene for MRP-like ABC transporter, exons 1-28 Length = 11038 Score = 289 bits (146), Expect = 6e-75 Identities = 278/322 (86%) Strand = Plus / Minus Query: 375 ccttcgatgactttgtaaagtgacgaccaccacctatcaggtggaacctgatactcagtg 434 ||||| ||||||||||| || || |||||||||||||||| |||||||| ||||| || | Sbjct: 10570 ccttccatgactttgtatagcgatgaccaccacctatcagatggaacctcatactgagcg 10511 Query: 435 agtgactcctcgatttcggtgttgtgcttcccttcaaggacgctctgcagggtgattact 494 |||| || || ||||||||||||||||||||||| ||||| |||| || ||||||||| Sbjct: 10510 agtgtatcatcaatttcggtgttgtgcttcccttcgaggacattctgtagagtgattact 10451 Query: 495 gcgtcctttgttttcctgaggatgctgtttccctcggcaacctccaacgagagaaggtca 554 || ||||||||||||||||||||| |||||||||| ||| |||||| | ||||||||| Sbjct: 10450 gcatcctttgttttcctgaggatgttgtttccctcagcagcctccagtgcaagaaggtca 10391 Query: 555 ctgtgggatgacgcgaggctagcagcaagcgcaaactgggcagcaacagcccatcggttc 614 ||||| || || || |||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 10390 ctgtgtgaagaggcaaggctagcggcaagcgcaaactgcgcagcaacagcccatcggtta 10331 Query: 615 gacgcagcccatttcctctgaatatcttgcaacttactttcttcctttcgcagcctctct 674 || || |||| |||||||| |||||||||| ||| |||||||||||||||| |||||| Sbjct: 10330 gatgctacccacttcctctggatatcttgcatcttgctttcttcctttcgcaacctctcc 10271 Query: 675 tcaccattcccaagcacaagag 696 ||||||| ||||| ||||||| Sbjct: 10270 tcaccatccccaaatacaagag 10249 Score = 40.1 bits (20), Expect = 9.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 288 atttgatcccagtcaatagacccgtggttttcaaaactgtaaccaggttgccg---acgg 344 ||||| |||||||||||||| | || |||||||||| | |||| |||||| | |||| Sbjct: 11034 atttggtcccagtcaatagaactgttgttttcaaaattataacttggttgctgtagacgg 10975 Query: 345 ttgcgaccca 354 |||||||||| Sbjct: 10974 ttgcgaccca 10965
>gb|AC163029.5| Mus musculus chromosome 1, clone RP23-267I23, complete sequence Length = 181761 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ataataaaatgtacaagaat 182 |||||||||||||||||||| Sbjct: 50347 ataataaaatgtacaagaat 50366
>emb|AL445687.5| Human DNA sequence from clone RP11-567B20 on chromosome 1 Contains a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 9kDa (NDUFA4) pseudogene, a phosphatidylinositol transfer protein cytoplasmic 1 (PITPNC1) pseudogene and contains two CpG islands, complete sequence Length = 168108 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 ccatttcctctgaatatctt 642 |||||||||||||||||||| Sbjct: 28748 ccatttcctctgaatatctt 28767
>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs, STSs and GSSs, complete sequence Length = 176446 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 aatgtactacaagactgtagaaattaaa 207 |||||||||||||||| ||| ||||||| Sbjct: 115170 aatgtactacaagactatagtaattaaa 115143
>emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in linkage group 8, complete sequence Length = 141160 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 aaaatgtacaagaatgtact 187 |||||||||||||||||||| Sbjct: 74415 aaaatgtacaagaatgtact 74396
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete sequence Length = 108056 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tgcaatgccagtgttcaaca 282 |||||||||||||||||||| Sbjct: 29594 tgcaatgccagtgttcaaca 29575
>gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159325 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 ccatttcctctgaatatctt 642 |||||||||||||||||||| Sbjct: 107111 ccatttcctctgaatatctt 107092
>gb|AC105151.8| Mus musculus chromosome 1, clone RP23-28N2, complete sequence Length = 270578 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ataataaaatgtacaagaat 182 |||||||||||||||||||| Sbjct: 87589 ataataaaatgtacaagaat 87570
>ref|NM_001008070.1| Xenopus tropicalis MGC79705 protein (MGC79705), mRNA Length = 2135 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 attgcaatgccagtgttcaa 280 |||||||||||||||||||| Sbjct: 1072 attgcaatgccagtgttcaa 1053
>gb|AC097587.3| Sus scrofa clone RP44-50K20, complete sequence Length = 111967 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 653 ttcttcctttcgcagcctctcttc 676 ||||||||||| |||||||||||| Sbjct: 88393 ttcttcctttcccagcctctcttc 88416
>gb|BC080964.1| Xenopus tropicalis MGC79705 protein, mRNA (cDNA clone MGC:79705 IMAGE:6981086), complete cds Length = 2135 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 attgcaatgccagtgttcaa 280 |||||||||||||||||||| Sbjct: 1072 attgcaatgccagtgttcaa 1053
>emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in linkage group 22, complete sequence Length = 155796 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 tgtactggcgataataaaatgtac 176 ||||||||| |||||||||||||| Sbjct: 82701 tgtactggctataataaaatgtac 82678 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,412,837 Number of Sequences: 3902068 Number of extensions: 5412837 Number of successful extensions: 96672 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96614 Number of HSP's gapped (non-prelim): 57 length of query: 696 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 673 effective length of database: 17,143,297,704 effective search space: 11537439354792 effective search space used: 11537439354792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
