ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
2dbj|AK098920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
3dbj|AK062106.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6gb|AY596619.1| Saccharum officinarum clone SCEZLB1008G11, comple... 50 0.010
7gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, c... 44 0.64
8gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, comp... 44 0.64
9gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, comple... 44 0.64
10gb|AY108873.1| Zea mays PCO135817 mRNA sequence 44 0.64
11gb|AC120855.9| Mus musculus chromosome 18, clone RP23-270P23, co... 42 2.5
12gb|AC127340.4| Mus musculus BAC clone RP23-188M2 from chromosome... 42 2.5
13gb|AC130545.4| Mus musculus chromosome 18 clone RP24-297E18, com... 42 2.5
14gb|AC125084.4| Mus musculus BAC clone RP24-100F10 from chromosom... 42 2.5
15emb|AJ586888.1| Escherichia coli Genomic Island II, strain Nissl... 42 2.5
16emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, co... 42 2.5
17gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 42 2.5
18emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on ch... 42 2.5
19ref|NM_126334.2| Arabidopsis thaliana calmodulin binding AT2G027... 40 10.0
20ref|NM_202676.1| Arabidopsis thaliana calmodulin binding AT3G492... 40 10.0
21ref|NM_114785.2| Arabidopsis thaliana calmodulin binding AT3G492... 40 10.0
22gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome... 40 10.0
23gb|AY810284.1| Schistosoma japonicum SJCHGC03774 protein mRNA, p... 40 10.0
24gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome... 40 10.0
25gb|AC115743.10| Mus musculus chromosome 5, clone RP23-477P24, co... 40 10.0
26gb|AY484700.1| Arabidopsis thaliana guard cell associated protei... 40 10.0
27gb|AC124469.4| Mus musculus BAC clone RP24-172B22 from chromosom... 40 10.0
28emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in... 40 10.0
29gb|AC102933.6| Mus musculus chromosome 8, clone RP24-211I18, com... 40 10.0
30gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 40 10.0
31gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete s... 40 10.0
32emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chr... 40 10.0
33gb|BT000602.1| Arabidopsis thaliana SF16 -like protein (At3g492... 40 10.0
34emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BA... 40 10.0
35gb|AC104150.6| Homo sapiens 3q BAC RP11-523G9 (Roswell Park Canc... 40 10.0
36emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 i... 40 10.0
37gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map... 40 10.0
38gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cance... 40 10.0
39gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, co... 40 10.0
40gb|AF361635.1| Arabidopsis thaliana AT3g49260/F2K15_120 mRNA, co... 40 10.0
41gb|AC153137.4| Mus musculus BAC clone RP23-471J16 from chromosom... 40 10.0
42dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 10.0
43gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete ... 40 10.0
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
45emb|BX822787.1|CNS0A64Q Arabidopsis thaliana Full-length cDNA Co... 40 10.0
46emb|BX822237.1|CNS0A618 Arabidopsis thaliana Full-length cDNA Co... 40 10.0
47gb|AY087861.1| Arabidopsis thaliana clone 39013 mRNA, complete s... 40 10.0
48gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complet... 40 10.0
49gb|AC013829.13| Homo sapiens chromosome 8, clone RP11-23D17, com... 40 10.0
50emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chro... 40 10.0
51emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chr... 40 10.0
52emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in... 40 10.0
53emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chro... 40 10.0
54dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 10.0 
>dbj|AK120664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J10, full
            insert sequence
          Length = 2641

 Score =  167 bits (84), Expect = 6e-38
 Identities = 237/287 (82%), Gaps = 12/287 (4%)
 Strand = Plus / Minus

                                                                        
Query: 276  caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 335
            |||||||||||||||| | ||||  |||| ||||||| || |||||| |||||||| |||
Sbjct: 2337 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 2278

                                                                        
Query: 336  cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 389
            || |||||||||||| ||||  ||||   ||||||||| | ||| ||||      |||||
Sbjct: 2277 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 2218

                                                                        
Query: 390  cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 449
            ||||| |||||||||   |||||||||| ||||||||||||||||||||||  |||||||
Sbjct: 2217 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 2158

                                                                        
Query: 450  ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 506
            || ||||||| || |||| | |||||||| ||||| |   | |||||||||||||| |||
Sbjct: 2157 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 2098

                                                           
Query: 507  ttg---gttctaaggcttccattaggcagaggttcttccttggacct 550
            |||   ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 2097 ttgctagttttaaggtttccattagacagaggttcttccttggacct 2051
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>dbj|AK098920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N06, full
            insert sequence
          Length = 2040

 Score =  167 bits (84), Expect = 6e-38
 Identities = 237/287 (82%), Gaps = 12/287 (4%)
 Strand = Plus / Minus

                                                                        
Query: 276  caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 335
            |||||||||||||||| | ||||  |||| ||||||| || |||||| |||||||| |||
Sbjct: 1865 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 1806

                                                                        
Query: 336  cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 389
            || |||||||||||| ||||  ||||   ||||||||| | ||| ||||      |||||
Sbjct: 1805 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 1746

                                                                        
Query: 390  cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 449
            ||||| |||||||||   |||||||||| ||||||||||||||||||||||  |||||||
Sbjct: 1745 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 1686

                                                                        
Query: 450  ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 506
            || ||||||| || |||| | |||||||| ||||| |   | |||||||||||||| |||
Sbjct: 1685 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 1626

                                                           
Query: 507  ttg---gttctaaggcttccattaggcagaggttcttccttggacct 550
            |||   ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 1625 ttgctagttttaaggtttccattagacagaggttcttccttggacct 1579
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>dbj|AK062106.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B02, full
            insert sequence
          Length = 2099

 Score =  167 bits (84), Expect = 6e-38
 Identities = 237/287 (82%), Gaps = 12/287 (4%)
 Strand = Plus / Minus

                                                                        
Query: 276  caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 335
            |||||||||||||||| | ||||  |||| ||||||| || |||||| |||||||| |||
Sbjct: 1923 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 1864

                                                                        
Query: 336  cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 389
            || |||||||||||| ||||  ||||   ||||||||| | ||| ||||      |||||
Sbjct: 1863 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 1804

                                                                        
Query: 390  cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 449
            ||||| |||||||||   |||||||||| ||||||||||||||||||||||  |||||||
Sbjct: 1803 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 1744

                                                                        
Query: 450  ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 506
            || ||||||| || |||| | |||||||| ||||| |   | |||||||||||||| |||
Sbjct: 1743 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 1684

                                                           
Query: 507  ttg---gttctaaggcttccattaggcagaggttcttccttggacct 550
            |||   ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct: 1683 ttgctagttttaaggtttccattagacagaggttcttccttggacct 1637
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 211/256 (82%), Gaps = 12/256 (4%)
 Strand = Plus / Plus

                                                                            
Query: 307      tgtttgcagcagaaggaagagactgacggcgagtgaagccattcttgtccactggcagat 366
                |||||| || |||||| |||||||| ||||| |||||||||||| ||||  ||||   ||
Sbjct: 29795549 tgtttgtagaagaaggtagagactggcggcgtgtgaagccattcatgtctgctggtgaat 29795608

                                                                            
Query: 367      cagaatctaatctgggtg------gtcctcgcaattttgcctttaacgattctgttggag 420
                ||||||| | ||| ||||      |||||||||| |||||||||   |||||||||| ||
Sbjct: 29795609 cagaatccagtcttggtgaattctgtcctcgcaactttgcctttgcagattctgttgcag 29795668

                                                                            
Query: 421      ccatatagcttggcttccttgatggaactggagtattcttggttccactctccgggtatt 480
                ||||||||||||||||||||  ||||||||| ||||||| || |||| | |||||||| |
Sbjct: 29795669 ccatatagcttggcttccttcgtggaactggcgtattctgggctccattttccgggtaat 29795728

                                                                            
Query: 481      ctgaat---tagagaacgaagaccttctcttg---gttctaaggcttccattaggcagag 534
                |||| |   | |||||||||||||| ||||||   ||| ||||| ||||||||| |||||
Sbjct: 29795729 ctgatttggtggagaacgaagacctcctcttgctagttttaaggtttccattagacagag 29795788

                                
Query: 535      gttcttccttggacct 550
                ||||||||||||||||
Sbjct: 29795789 gttcttccttggacct 29795804
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0683B11
          Length = 155955

 Score =  145 bits (73), Expect = 2e-31
 Identities = 211/256 (82%), Gaps = 12/256 (4%)
 Strand = Plus / Plus

                                                                         
Query: 307   tgtttgcagcagaaggaagagactgacggcgagtgaagccattcttgtccactggcagat 366
             |||||| || |||||| |||||||| ||||| |||||||||||| ||||  ||||   ||
Sbjct: 39644 tgtttgtagaagaaggtagagactggcggcgtgtgaagccattcatgtctgctggtgaat 39703

                                                                         
Query: 367   cagaatctaatctgggtg------gtcctcgcaattttgcctttaacgattctgttggag 420
             ||||||| | ||| ||||      |||||||||| |||||||||   |||||||||| ||
Sbjct: 39704 cagaatccagtcttggtgaattctgtcctcgcaactttgcctttgcagattctgttgcag 39763

                                                                         
Query: 421   ccatatagcttggcttccttgatggaactggagtattcttggttccactctccgggtatt 480
             ||||||||||||||||||||  ||||||||| ||||||| || |||| | |||||||| |
Sbjct: 39764 ccatatagcttggcttccttcgtggaactggcgtattctgggctccattttccgggtaat 39823

                                                                         
Query: 481   ctgaat---tagagaacgaagaccttctcttg---gttctaaggcttccattaggcagag 534
             |||| |   | |||||||||||||| ||||||   ||| ||||| ||||||||| |||||
Sbjct: 39824 ctgatttggtggagaacgaagacctcctcttgctagttttaaggtttccattagacagag 39883

                             
Query: 535   gttcttccttggacct 550
             ||||||||||||||||
Sbjct: 39884 gttcttccttggacct 39899
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>gb|AY596619.1| Saccharum officinarum clone SCEZLB1008G11, complete sequence
          Length = 2293

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 510 gttctaaggcttccattaggcagaggttcttccttggacct 550
           ||||||||||||||||||| |||  | ||||||||||||||
Sbjct: 544 gttctaaggcttccattagacaggtgctcttccttggacct 584



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 388 ctcgcaattttgcctttaacgattctgttggagccatatagcttggcttccttg 441
           |||||||||||||||||   || || || | ||||||||||||||||| |||||
Sbjct: 416 ctcgcaattttgcctttgcggactccgtcgcagccatatagcttggctgccttg 469
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>gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, complete sequence
          Length = 182777

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 270  cctcttcaccgtctccattcagttttgatt 299
            ||||||||||  ||||||||||||||||||
Sbjct: 3628 cctcttcacctgctccattcagttttgatt 3599
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>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence
          Length = 139630

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 270    cctcttcaccgtctccattcagttttgatt 299
              ||||||||||  ||||||||||||||||||
Sbjct: 105398 cctcttcacctgctccattcagttttgatt 105369
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>gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, complete sequence
          Length = 191840

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 80     attttaatacactcagaggaactaca 105
              |||| |||||||||||||||||||||
Sbjct: 187452 atttgaatacactcagaggaactaca 187477
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>gb|AY108873.1| Zea mays PCO135817 mRNA sequence
          Length = 832

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 388 ctcgcaattttgcctttaacgattctgttggagccatatagcttggcttccttg 441
           |||||||||| ||||||   || || |||| ||||||||||||||||| |||||
Sbjct: 276 ctcgcaatttcgcctttgcggactccgttgcagccatatagcttggctgccttg 223



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 510 gttctaaggcttccattaggcagaggttcttccttggacct 550
           ||||||||||||||||||| ||   | ||||||||||||||
Sbjct: 148 gttctaaggcttccattagacaagtgctcttccttggacct 108
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>gb|AC120855.9| Mus musculus chromosome 18, clone RP23-270P23, complete sequence
          Length = 226294

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 644    agttaagaatggcgtttctagatcatatt 672
              |||||||||||| ||| ||||||||||||
Sbjct: 213715 agttaagaatggggttcctagatcatatt 213687
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>gb|AC127340.4| Mus musculus BAC clone RP23-188M2 from chromosome 18, complete sequence
          Length = 210649

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 644    agttaagaatggcgtttctagatcatatt 672
              |||||||||||| ||| ||||||||||||
Sbjct: 150893 agttaagaatggggttcctagatcatatt 150921
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>gb|AC130545.4| Mus musculus chromosome 18 clone RP24-297E18, complete sequence
          Length = 156144

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 644    agttaagaatggcgtttctagatcatatt 672
              |||||||||||| ||| ||||||||||||
Sbjct: 104145 agttaagaatggggttcctagatcatatt 104173
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>gb|AC125084.4| Mus musculus BAC clone RP24-100F10 from chromosome 18, complete sequence
          Length = 170040

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 644    agttaagaatggcgtttctagatcatatt 672
              |||||||||||| ||| ||||||||||||
Sbjct: 121981 agttaagaatggggttcctagatcatatt 121953
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>emb|AJ586888.1| Escherichia coli Genomic Island II, strain Nissle 1917
          Length = 96457

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   caagtacagagacaggtatac 218
             |||||||||||||||||||||
Sbjct: 37222 caagtacagagacaggtatac 37242
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>emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, complete sequence
          Length = 72241

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 295   tgattcctctattgtttgcag 315
             |||||||||||||||||||||
Sbjct: 58015 tgattcctctattgtttgcag 57995
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>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete
             sequence
          Length = 132103

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 696   aaatttgaattttccaaaaga 716
             |||||||||||||||||||||
Sbjct: 36113 aaatttgaattttccaaaaga 36133
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>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete
              sequence
          Length = 230161

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    cattcagttttgattcctcta 305
              |||||||||||||||||||||
Sbjct: 172938 cattcagttttgattcctcta 172958
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>ref|NM_126334.2| Arabidopsis thaliana calmodulin binding AT2G02790 mRNA, complete cds
          Length = 1911

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1547 gttggagccatatagcttgg 1528
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>ref|NM_202676.1| Arabidopsis thaliana calmodulin binding AT3G49260 transcript variant
            AT3G49260.2 mRNA, complete cds
          Length = 1781

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1395 gttggagccatatagcttgg 1376
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>ref|NM_114785.2| Arabidopsis thaliana calmodulin binding AT3G49260 transcript variant
            AT3G49260.1 mRNA, complete cds
          Length = 1695

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1309 gttggagccatatagcttgg 1290
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>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07,
             complete sequence
          Length = 136465

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 695   caaatttgaattttccaaaa 714
             ||||||||||||||||||||
Sbjct: 48336 caaatttgaattttccaaaa 48355
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>gb|AY810284.1| Schistosoma japonicum SJCHGC03774 protein mRNA, partial cds
          Length = 716

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 ttcatccacaacaatgcacc 248
           ||||||||||||||||||||
Sbjct: 544 ttcatccacaacaatgcacc 525
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>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence
          Length = 166883

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 542   cttggacctagtctcttctt 561
             ||||||||||||||||||||
Sbjct: 35432 cttggacctagtctcttctt 35451
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>gb|AC115743.10| Mus musculus chromosome 5, clone RP23-477P24, complete sequence
          Length = 189890

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 542    cttggacctagtctcttctt 561
              ||||||||||||||||||||
Sbjct: 175948 cttggacctagtctcttctt 175967
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>gb|AY484700.1| Arabidopsis thaliana guard cell associated protein (GCA2) mRNA,
            complete cds
          Length = 1720

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1278 gttggagccatatagcttgg 1259
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>gb|AC124469.4| Mus musculus BAC clone RP24-172B22 from chromosome 1, complete sequence
          Length = 162294

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 675    gtatcagatgccagcttatc 694
              ||||||||||||||||||||
Sbjct: 158467 gtatcagatgccagcttatc 158448
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>emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in linkage group 15,
             complete sequence
          Length = 135398

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   aatgcacccttctgatggaa 260
             ||||||||||||||||||||
Sbjct: 55659 aatgcacccttctgatggaa 55678
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>gb|AC102933.6| Mus musculus chromosome 8, clone RP24-211I18, complete sequence
          Length = 172489

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   aacaagtacagagacaggta 215
             ||||||||||||||||||||
Sbjct: 83989 aacaagtacagagacaggta 84008
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    gattcctctattgtttgcag 315
              ||||||||||||||||||||
Sbjct: 111704 gattcctctattgtttgcag 111685
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>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence
          Length = 105599

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   ccattcagttttgattcctc 303
             ||||||||||||||||||||
Sbjct: 63392 ccattcagttttgattcctc 63373
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>emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chromosome 1 Contains a
              putative novel transcript, a gene for a novel protein
              (FLJ11269), a processed pseudogene for cyclin T2 (CCNT2)
              and a CpG island, complete sequence
          Length = 172805

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    cttggttccactctccgggt 477
              ||||||||||||||||||||
Sbjct: 166127 cttggttccactctccgggt 166146
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>gb|BT000602.1| Arabidopsis thaliana SF16 -like protein  (At3g49260/F2K15_120) mRNA,
            complete cds
          Length = 1416

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1151 gttggagccatatagcttgg 1132
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>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15
          Length = 129757

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   gttggagccatatagcttgg 433
             ||||||||||||||||||||
Sbjct: 68251 gttggagccatatagcttgg 68232
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>gb|AC104150.6| Homo sapiens 3q BAC RP11-523G9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160850

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    aaataactgcagctatacatttta 85
             |||||| |||||||||||||||||
Sbjct: 10787 aaataaatgcagctatacatttta 10810
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>emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 in linkage group 22,
              complete sequence
          Length = 198379

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tcaaaacagaaatgagccaa 63
              ||||||||||||||||||||
Sbjct: 106345 tcaaaacagaaatgagccaa 106326



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tcaaaacagaaatgagccaa 63
              ||||||||||||||||||||
Sbjct: 102967 tcaaaacagaaatgagccaa 102948
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>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete
             sequence
          Length = 81004

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   gttggagccatatagcttgg 433
             ||||||||||||||||||||
Sbjct: 36924 gttggagccatatagcttgg 36943
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>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181345

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     aaataactgcagctatacatttta 85
              |||||| |||||||||||||||||
Sbjct: 164250 aaataaatgcagctatacatttta 164273
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>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence
          Length = 221086

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   ctaatctgggtggtcctcgc 392
             ||||||||||||||||||||
Sbjct: 19446 ctaatctgggtggtcctcgc 19465
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>gb|AF361635.1| Arabidopsis thaliana AT3g49260/F2K15_120 mRNA, complete cds
          Length = 1645

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1259 gttggagccatatagcttgg 1240
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>gb|AC153137.4| Mus musculus BAC clone RP23-471J16 from chromosome 1, complete sequence
          Length = 201668

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 675   gtatcagatgccagcttatc 694
             ||||||||||||||||||||
Sbjct: 70315 gtatcagatgccagcttatc 70296
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 571     taatatcatatccgttatca 590
               ||||||||||||||||||||
Sbjct: 1288592 taatatcatatccgttatca 1288573
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>gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete sequence
          Length = 164168

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   ctaatctgggtggtcctcgc 392
             ||||||||||||||||||||
Sbjct: 82902 ctaatctgggtggtcctcgc 82921
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 695     caaatttgaattttccaaaa 714
               ||||||||||||||||||||
Sbjct: 4293729 caaatttgaattttccaaaa 4293748
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>emb|BX822787.1|CNS0A64Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB64ZA12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1600

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1246 gttggagccatatagcttgg 1227
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>emb|BX822237.1|CNS0A618 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB22ZA04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1742

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1402 gttggagccatatagcttgg 1383
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>gb|AY087861.1| Arabidopsis thaliana clone 39013 mRNA, complete sequence
          Length = 1672

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gttggagccatatagcttgg 433
            ||||||||||||||||||||
Sbjct: 1300 gttggagccatatagcttgg 1281
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>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence
          Length = 167777

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ctctattgtttgcagcagaa 320
             ||||||||||||||||||||
Sbjct: 54440 ctctattgtttgcagcagaa 54421
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>gb|AC013829.13| Homo sapiens chromosome 8, clone RP11-23D17, complete sequence
          Length = 147584

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tggcttccttgatggaactg 450
             ||||||||||||||||||||
Sbjct: 54299 tggcttccttgatggaactg 54318
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>emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chromosome X, complete
             sequence
          Length = 58222

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aacagaaatgagccaaataa 67
             ||||||||||||||||||||
Sbjct: 56127 aacagaaatgagccaaataa 56108
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>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete
             sequence
          Length = 195763

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aacagaaatgagccaaataa 67
             ||||||||||||||||||||
Sbjct: 50336 aacagaaatgagccaaataa 50355
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>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20,
              complete sequence
          Length = 217957

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 565    tttctgtaatatcatatccgttat 588
              |||||||||| |||||||||||||
Sbjct: 104971 tttctgtaatttcatatccgttat 104994
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>emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chromosome X, complete
             sequence
          Length = 104719

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aacagaaatgagccaaataa 67
             ||||||||||||||||||||
Sbjct: 48888 aacagaaatgagccaaataa 48907
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>dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01O24, TM0227,
             complete sequence
          Length = 84166

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 681   gatgccagcttatccaaatttgaa 704
             ||||||||||| ||||||||||||
Sbjct: 23642 gatgccagcttttccaaatttgaa 23665


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,447,774
Number of Sequences: 3902068
Number of extensions: 7447774
Number of successful extensions: 153043
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152819
Number of HSP's gapped (non-prelim): 212
length of query: 729
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 706
effective length of database: 17,143,297,704
effective search space: 12103168179024
effective search space used: 12103168179024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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