ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27f18 |
|---|---|
| Clone Library Name | barley_pub |
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 195 bits (496), Expect = 1e-49 Identities = 103/161 (63%), Positives = 118/161 (73%) Frame = -1 Query: 654 SAGPNANPLNLFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPM 475 + GPNANPLNLFPQG+P+ LR QFQAL A+VQANPQILQPM Sbjct: 226 TGGPNANPLNLFPQGMPAADAGAGAGNLDF------LRNSQQFQALRAMVQANPQILQPM 279 Query: 474 LQELGKQNPQILRLIQENQAEFLRLVNETPESXXXXXXXXXXXAQMPQAVQVTPEEREAI 295 LQELGKQNPQ++RLIQE+QA+FLRL+NE E MPQAV VTPEEREAI Sbjct: 280 LQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAA--MPQAVTVTPEEREAI 337 Query: 294 QRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQ 172 +RLE MGF+R +VLEVFFACN++EELAANYLLDH HEFE+Q Sbjct: 338 ERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFEDQ 378
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 185 bits (470), Expect = 1e-46 Identities = 98/163 (60%), Positives = 116/163 (71%), Gaps = 3/163 (1%) Frame = -1 Query: 654 SAGPNANPLNLFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPM 475 ++GPNANPL+LFPQG+P+ LR QFQAL A+VQANPQ+LQPM Sbjct: 263 ASGPNANPLDLFPQGLPNVGGNPGAGTLDF------LRNSQQFQALRAMVQANPQVLQPM 316 Query: 474 LQELGKQNPQILRLIQENQAEFLRLVNETPESXXXXXXXX---XXXAQMPQAVQVTPEER 304 LQELGKQNP ++RLIQ++QA+FLRL+NE E PQA+QVT EER Sbjct: 317 LQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEER 376 Query: 303 EAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 175 EAI+RLE+MGF R LVLEVFFACN++EELAANYLLDH HEFEE Sbjct: 377 EAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 184 bits (468), Expect = 2e-46 Identities = 95/162 (58%), Positives = 116/162 (71%) Frame = -1 Query: 657 VSAGPNANPLNLFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQP 478 +S+GPNA+PL+LFPQ +P+ LR QF+ LL+LVQANPQILQP Sbjct: 233 LSSGPNASPLDLFPQALPNASTDAAGLGNLDA-----LRNNAQFRTLLSLVQANPQILQP 287 Query: 477 MLQELGKQNPQILRLIQENQAEFLRLVNETPESXXXXXXXXXXXAQMPQAVQVTPEEREA 298 +LQELGKQNPQIL+LIQENQAEFL L+NE E MPQ + VTPEE EA Sbjct: 288 LLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEA 347 Query: 297 IQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQ 172 I RLE+MGF+R LVL+VFFACN+DE+LAANYLLDH +EF+++ Sbjct: 348 ILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDE 389
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 163 bits (412), Expect = 6e-40 Identities = 89/161 (55%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Frame = -1 Query: 654 SAGPNANPLNLFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPM 475 S GPN++PL+LFPQ LR QFQ L +V +NPQILQPM Sbjct: 217 SGGPNSSPLDLFPQ------ETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPM 270 Query: 474 LQELGKQNPQILRLIQENQAEFLRLVNETPE-SXXXXXXXXXXXAQMPQAVQVTPEEREA 298 LQELGKQNPQ+LRLIQENQAEFL+LVNE E S +MP A+ VTP E+EA Sbjct: 271 LQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEA 330 Query: 297 IQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 175 IQRLE+MGF+R LV+E F AC+R+EELAANYLL++ +FE+ Sbjct: 331 IQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 162 bits (409), Expect = 1e-39 Identities = 87/161 (54%), Positives = 111/161 (68%), Gaps = 1/161 (0%) Frame = -1 Query: 654 SAGPNANPLNLFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPM 475 S GPN++PL+LFPQ S LR QFQ L ++V +NPQILQPM Sbjct: 214 SGGPNSSPLDLFPQEAVSDAAGGDLGTLEF------LRGNDQFQQLRSMVNSNPQILQPM 267 Query: 474 LQELGKQNPQILRLIQENQAEFLRLVNETPE-SXXXXXXXXXXXAQMPQAVQVTPEEREA 298 LQELGKQNPQ+LRLIQENQAEFL+L+NE E S +MP +V VTPEE+E+ Sbjct: 268 LQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQES 327 Query: 297 IQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 175 I+RLE+MGF+R +V+E F +C+R+EELAANYLL+H +FE+ Sbjct: 328 IERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 105 bits (262), Expect = 2e-22 Identities = 51/125 (40%), Positives = 80/125 (64%) Frame = -1 Query: 546 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESXXXX 367 LR +PQFQ L +VQ NPQ+L+ +LQ++G+ +P + + I +N FL+L+ E E Sbjct: 250 LRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGESAL 309 Query: 366 XXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGH 187 +Q+T EE E+I RL +GF+R +V++ + AC+++EELAANYL +HGH Sbjct: 310 PSGGIQ-------IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGH 362 Query: 186 EFEEQ 172 E E++ Sbjct: 363 ESEDE 367
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 104 bits (259), Expect = 3e-22 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 6/129 (4%) Frame = -1 Query: 546 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETP----ES 379 LR PQFQ + ++Q NP +L +LQ+LG++NPQ+L+ I +Q +F++++NE P + Sbjct: 235 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADI 294 Query: 378 XXXXXXXXXXXAQMPQA--VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANY 205 + PQ +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAAN+ Sbjct: 295 SDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354 Query: 204 LLDHGHEFE 178 LL + E Sbjct: 355 LLSQNFDDE 363
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 104 bits (259), Expect = 3e-22 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 6/129 (4%) Frame = -1 Query: 546 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETP----ES 379 LR PQFQ + ++Q NP +L +LQ+LG++NPQ+L+ I +Q +F++++NE P + Sbjct: 235 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADI 294 Query: 378 XXXXXXXXXXXAQMPQA--VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANY 205 + PQ +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAAN+ Sbjct: 295 SDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354 Query: 204 LLDHGHEFE 178 LL + E Sbjct: 355 LLSQNFDDE 363
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 99.0 bits (245), Expect = 1e-20 Identities = 48/129 (37%), Positives = 82/129 (63%), Gaps = 8/129 (6%) Frame = -1 Query: 546 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE-TPESXXX 370 LR PQFQ + ++Q NP +L +LQ++G++NPQ+L+ I ++Q F++++NE E+ Sbjct: 279 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 338 Query: 369 XXXXXXXXAQMPQA-------VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAA 211 + +A +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAA Sbjct: 339 GGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 398 Query: 210 NYLLDHGHE 184 N+LL + Sbjct: 399 NFLLQQNFD 407
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 94.7 bits (234), Expect = 3e-19 Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 15/136 (11%) Frame = -1 Query: 546 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESXXXX 367 LR PQFQ + ++Q NP +L +LQ++G++NPQ+L+ I ++Q F++++NE + Sbjct: 279 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 338 Query: 366 XXX---------------XXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACN 232 + +QVTP+E+EAI+RL+++GF LV++ +FAC Sbjct: 339 GGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 398 Query: 231 RDEELAANYLLDHGHE 184 ++E LAAN+LL + Sbjct: 399 KNENLAANFLLQQNFD 414
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 60.8 bits (146), Expect = 4e-09 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 23/133 (17%) Frame = -1 Query: 522 ALLALVQANPQILQPMLQELGKQNPQI---------------LRLIQENQAEFLRLVNET 388 +L +V NP+ L P+L+ + + PQ+ L + +N + + ++ Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323 Query: 387 PESXXXXXXXXXXXAQMPQA-------VQVTPEEREAIQRLESMGFNRELVLEVFFACNR 229 E A + Q V TPE+ +AI RL +GF R+LV++V+FAC++ Sbjct: 324 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 383 Query: 228 DEELAANYLL-DH 193 +EE AAN L DH Sbjct: 384 NEEAAANILFSDH 396
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 34.3 bits (77), Expect = 0.43 Identities = 25/110 (22%), Positives = 37/110 (33%) Frame = -3 Query: 748 STCSCSTGTKPAGSIPGSGCTSTGSXXXXXXXXXXXCESSKPFPTGCSKXXXXXXXXXXX 569 ST S ST T P+ + S TST S SS + S Sbjct: 218 STSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSP 277 Query: 568 XXXXXXCIATASTVPSTACIGPG*SPNPTANASRAGETKSTDPAVDSGKS 419 +T+++ ST+ S +PT ++ T + DS S Sbjct: 278 SSKSTSASSTSTSSYSTSTSPSLTSSSPTLASTSPSSTSISSTFTDSTSS 327 Score = 33.5 bits (75), Expect = 0.73 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Frame = -3 Query: 748 STCSCSTGTKPAGSIPGSGCTSTGSXXXXXXXXXXXCESSKPFPTGCSKXXXXXXXXXXX 569 ST ST T P+ + S TST S S + Sbjct: 190 STSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQ 249 Query: 568 XXXXXXCIATASTVPSTACIGPG*SPNPTANASRAGETK------STDPAVDS 428 +T+++ ST+ S +P++ ++ A T ST P++ S Sbjct: 250 SSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTS 302 Score = 32.0 bits (71), Expect = 2.1 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Frame = -3 Query: 748 STCSCSTGTKPA--GSIPGSGCTSTGSXXXXXXXXXXXCESSKPFPTGCSKXXXXXXXXX 575 +T ST T P+ + P S TS+ S S+ P+ S Sbjct: 183 TTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSS 242 Query: 574 XXXXXXXXCIATASTVPSTACIGPG*SPNPTANASRAGETKSTDPAVDSGKS 419 +T+S+ ST+ P + +++ S + +KST + S S Sbjct: 243 SSTSTSQSSTSTSSSSTSTS---PSSTSTSSSSTSTSPSSKSTSASSTSTSS 291
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 33.9 bits (76), Expect = 0.56 Identities = 19/70 (27%), Positives = 34/70 (48%) Frame = -1 Query: 315 PEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQQ*MLDWCYRRKT 136 P + + + SMGF+R+ L+ A N E A +++ H + + + M R Sbjct: 722 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAA 781 Query: 135 ESVTEAVQFG 106 ES++E+V G Sbjct: 782 ESISESVPVG 791
>YBE7_YEAST (P34216) Protein YBL047C| Length = 1381 Score = 33.1 bits (74), Expect = 0.95 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -1 Query: 333 QAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLD 196 + V TP+ A++ L MGF E CN D E A N+LLD Sbjct: 1335 RGVATTPKSL-AVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 1379
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 32.7 bits (73), Expect = 1.2 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = -1 Query: 315 PEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQQ*MLDWCYRRKT 136 P + + + SMGF+R+ L+ A N E A +++ H + + + M R Sbjct: 722 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAA 781 Query: 135 ESVTEAVQFG 106 +S++E+V G Sbjct: 782 DSISESVPVG 791
>NISB_LACLA (P20103) Nisin biosynthesis protein nisB| Length = 993 Score = 32.7 bits (73), Expect = 1.2 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -1 Query: 312 EEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLD 196 E+R +++R E + FN L L+++ + NR E +YL D Sbjct: 721 EKRVSVERREKLPFNEWLYLKLYISINRQNEFLLSYLPD 759
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 32.0 bits (71), Expect = 2.1 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -1 Query: 336 PQAVQVTPEEREAIQRLESMGFNRE--LVLEVFFACNRDE 223 P +++TPE EA+ R NRE L+LE F C R+E Sbjct: 313 PVPLELTPENAEAVARFLGDAVNREPALMLEYFCRCAREE 352
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 31.2 bits (69), Expect = 3.6 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%) Frame = -3 Query: 748 STCSCSTGTKPAGSIPGSGCTSTGSXXXXXXXXXXXCESSKPFPT------GCSKXXXXX 587 ST S T T+P ++ S T++ S S+ P + S Sbjct: 418 STSSTVTTTEPTTTLTTS--TASTSTTEPSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTP 475 Query: 586 XXXXXXXXXXXXCIATASTVPSTACIGPG*S---PNPTANASRAGETKSTDPAVDSGKS 419 + T++T PST+ GP S P+ TA++S + ST + + +S Sbjct: 476 TSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQS 534
>UBAP1_HUMAN (Q9NZ09) Ubiquitin-associated protein 1 (UBAP)| Length = 502 Score = 30.4 bits (67), Expect = 6.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -1 Query: 321 VTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 175 ++P ER+ ++ + +MG++ E VL + E +YL HG E+ Sbjct: 388 LSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK 436
>RIR1_HHV23 (P09853) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1144 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -1 Query: 336 PQAVQVTPEEREAIQRLESMGFNRE--LVLEVFFACNRDE 223 P +++TPE EA+ R +RE L+LE F C R+E Sbjct: 320 PVPLELTPENAEAVARFLGDAVDREPALMLEYFCRCAREE 359
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 30.0 bits (66), Expect = 8.0 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -3 Query: 538 ASTVPSTACIGPG*SPNPTANASRAGETKSTDPAVDSGKSG*VSPPG 398 A +P +GP P P A GE P D GK G PPG Sbjct: 349 ARGLPGKGLLGP---PGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPG 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,011,984 Number of Sequences: 219361 Number of extensions: 1804261 Number of successful extensions: 5200 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5177 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7932903580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
