Clone Name | rbasd27f18 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full insert sequence Length = 1567 Score = 515 bits (260), Expect = e-143 Identities = 488/563 (86%), Gaps = 12/563 (2%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1361 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1302 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 1301 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 1242 Query: 281 gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 340 | ||| |||||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 1241 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 1182 Query: 341 tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 397 ||||| ||| |||||||| ||||| |||||| || || ||||| | |||||| Sbjct: 1181 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 1122 Query: 398 accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 457 ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || Sbjct: 1121 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 1062 Query: 458 ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 517 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 1061 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 1002 Query: 518 agtgcttggaactgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccaca 577 || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct: 1001 agcgcttggaactgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggca 942 Query: 578 c------cagcaccagcattggccccaccacttggaacaccctgtgggaaaaggtttaga 631 | ||||||||| ||| | |||| ||||||||| ||||| ||||| ||||||||| Sbjct: 941 ccagcagcagcaccaggatttgacccagcacttggaatgccctgggggaataggtttaga 882 Query: 632 ggattcgcattaggcccagcagagacaccaccagatggctgcactgccggtagaggtgca 691 |||||||||||||| | | ||| ||||||||| ||||||||| | |||| |||||||| Sbjct: 881 ggattcgcattaggtc---ctgaggcaccaccagctggctgcacaggcggtggaggtgca 825 Query: 692 gcctgagcctgggatggagcctg 714 ||||||||||| |||||| |||| Sbjct: 824 gcctgagcctgagatggaacctg 802
>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full insert sequence Length = 1629 Score = 507 bits (256), Expect = e-140 Identities = 488/563 (86%), Gaps = 13/563 (2%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1395 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1336 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 1335 tcttcatccttgttgcatgcgaagaagacctccaa-acgagctcacggttgaaccccatt 1277 Query: 281 gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 340 | ||| |||||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 1276 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 1217 Query: 341 tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 397 ||||| ||| |||||||| ||||| |||||| || || ||||| | |||||| Sbjct: 1216 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 1157 Query: 398 accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 457 ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || Sbjct: 1156 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 1097 Query: 458 ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 517 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 1096 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 1037 Query: 518 agtgcttggaactgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccaca 577 || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct: 1036 agcgcttggaactgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggca 977 Query: 578 c------cagcaccagcattggccccaccacttggaacaccctgtgggaaaaggtttaga 631 | ||||||||| ||| | |||| ||||||||| ||||| ||||| ||||||||| Sbjct: 976 ccagcagcagcaccaggatttgacccagcacttggaatgccctgggggaataggtttaga 917 Query: 632 ggattcgcattaggcccagcagagacaccaccagatggctgcactgccggtagaggtgca 691 |||||||||||||| | | ||| ||||||||| ||||||||| | |||| |||||||| Sbjct: 916 ggattcgcattaggtc---ctgaggcaccaccagctggctgcacaggcggtggaggtgca 860 Query: 692 gcctgagcctgggatggagcctg 714 ||||||||||| |||||| |||| Sbjct: 859 gcctgagcctgagatggaacctg 837
>dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E09, full insert sequence Length = 726 Score = 476 bits (240), Expect = e-131 Identities = 430/493 (87%), Gaps = 9/493 (1%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 493 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 434 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 433 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 374 Query: 281 gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 340 | ||| |||||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 373 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 314 Query: 341 tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 397 ||||| ||| |||||||| ||||| |||||| || || ||||| | |||||| Sbjct: 313 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 254 Query: 398 accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 457 ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || Sbjct: 253 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 194 Query: 458 ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 517 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 193 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 134 Query: 518 agtgcttggaactgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccaca 577 || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct: 133 agcgcttggaactgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggca 74 Query: 578 c------cagcaccagcattggccccaccacttggaacaccctgtgggaaaaggtttaga 631 | ||||||||| ||| | |||| ||||||||| ||||| ||||| ||||||||| Sbjct: 73 ccagcagcagcaccaggatttgacccagcacttggaatgccctgggggaataggtttaga 14 Query: 632 ggattcgcattag 644 ||||||||||||| Sbjct: 13 ggattcgcattag 1
>gb|AY108395.1| Zea mays PCO142081 mRNA sequence Length = 1776 Score = 319 bits (161), Expect = 7e-84 Identities = 392/469 (83%) Strand = Plus / Minus Query: 179 tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 238 |||||||||||||||||||| | || |||||||| || || ||||| ||| |||||||| Sbjct: 1349 tcaaactcgtggccatgatcaaggaggtagttggctgcaagctcttcgtccttgttgcat 1290 Query: 239 gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 298 |||||||| || || | |||||||||| | ||||| |||||| |||||||||||||||| Sbjct: 1289 gcaaagaaaacttctagcacaagctcatggttgaagcccattccctcaagccgctggatg 1230 Query: 299 gcctcccgttcttctggagtaacttgaactgcctgtggcatttgagctgccagtgcgcct 358 ||||| ||||| ||||| |||||| || | || ||||| |||||||||| ||| Sbjct: 1229 gcctctcgttcctctggggtaactgtcaccgattgcggcatagcagctgccagttgacct 1170 Query: 359 agtatatttccgccagcaccactctcaggtgtttcatttaccaggcggagaaactcagcc 418 | ||| ||||| |||| ||||| ||| || ||||| || |||| ||||| ||||||||| Sbjct: 1169 aatatgtttcctccaggaccaccctccggagtttcgttcaccaagcggacaaactcagct 1110 Query: 419 tgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctcttgaagcatt 478 ||||||||||||||||| |||||||| ||||| |||||||| || || |||||||||||| Sbjct: 1109 tgattttcctgaatcaaacgcaggatttgtgggttttgtttgcctagttcttgaagcatt 1050 Query: 479 ggctgtaggatttggggattagcctggaccaatgcaagcagtgcttggaactgtggaagc 538 ||||| | |||||| ||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 1049 ggctgcaagatttgaggattagcctggaccaactgaagcagtgcttgaaactgtggaagc 990 Query: 539 tgtcgcaatgcatcaagggcaccggcaccggcacccacaccagcaccagcattggcccca 598 |||||||| |||||||||||||| | || ||| | | || |||| | |||||||||| Sbjct: 989 tgtcgcaaggcatcaagggcaccagatcctgcagctggaacaacacctggattggcccca 930 Query: 599 ccacttggaacaccctgtgggaaaaggtttagaggattcgcattaggcc 647 |||||||| |||||||| || |||||||| |||||||| |||||||||| Sbjct: 929 ccacttgggacaccctgaggaaaaaggttcagaggatttgcattaggcc 881
>gb|AY103604.1| Zea mays PCO142082 mRNA sequence Length = 1672 Score = 311 bits (157), Expect = 2e-81 Identities = 397/477 (83%) Strand = Plus / Minus Query: 179 tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 238 |||||||| ||||||||||||| || |||||||| | || ||||| ||| |||||||| Sbjct: 1331 tcaaactcatggccatgatccaggaggtagttggctgtaagctcttcgtccttgttgcat 1272 Query: 239 gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 298 |||||||| || || | |||||||||||| |||||||||||| ||| ||||||||||| Sbjct: 1271 gcaaagaaaacttctagcacaagctcacggttgaaccccattccctcgagccgctggata 1212 Query: 299 gcctcccgttcttctggagtaacttgaactgcctgtggcatttgagctgccagtgcgcct 358 ||||||||||| ||||| |||||| | | ||||||| |||||||||| ||| Sbjct: 1211 gcctcccgttcctctggggtaactgtcagcgtttgtggcacagcagctgccagttgacct 1152 Query: 359 agtatatttccgccagcaccactctcaggtgtttcatttaccaggcggagaaactcagcc 418 ||||| || || |||| ||||| |||||| | |||||| |||| ||||||||||||||| Sbjct: 1151 agtatgttccctccaggaccaccctcaggagattcattcaccaagcggagaaactcagct 1092 Query: 419 tgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctcttgaagcatt 478 ||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||| Sbjct: 1091 tgattttcctgaatcaaccgcagaatttgtgggttttgtttacctagctcttgaagcatt 1032 Query: 479 ggctgtaggatttggggattagcctggaccaatgcaagcagtgcttggaactgtggaagc 538 ||||| | |||||| |||||||||||||| || ||| |||||||| |||||||||||| Sbjct: 1031 ggctgcaagatttgaggattagcctggactaactgaaggagtgcttgaaactgtggaagc 972 Query: 539 tgtcgcaatgcatcaagggcaccggcaccggcacccacaccagcaccagcattggcccca 598 |||||||| |||||||| ||||| | || ||||| | || |||| | |||| |||| Sbjct: 971 tgtcgcaaggcatcaagagcaccagatcctgcacctggaacaacacctgggttggaccca 912 Query: 599 ccacttggaacaccctgtgggaaaaggtttagaggattcgcattaggcccagcagag 655 ||||||||||||||||| || |||||||| | |||||| ||||||||||| |||||| Sbjct: 911 ccacttggaacaccctgaggaaaaaggttcaaaggatttgcattaggccctgcagag 855
>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence Length = 819 Score = 196 bits (99), Expect = 7e-47 Identities = 189/219 (86%) Strand = Plus / Plus Query: 343 agctgccagtgcgcctagtatatttccgccagcaccactctcaggtgtttcatttaccag 402 |||||||||| |||||||| || || |||| ||||| |||||| | |||||| |||| Sbjct: 377 agctgccagttgacctagtatgttccctccaggaccaccctcaggagattcattcaccaa 436 Query: 403 gcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccc 462 ||||||||||||||| |||||||||||||||||||||| || || || |||||||| || Sbjct: 437 gcggagaaactcagcttgattttcctgaatcaaccgcaaaatttgggggttttgtttacc 496 Query: 463 cagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagcagtgc 522 |||||||||||||||||||| | |||||| |||||||||||||| || ||| ||||| Sbjct: 497 tagctcttgaagcattggctgcaagatttgaggattagcctggactaactgaaggagtgc 556 Query: 523 ttggaactgtggaagctgtcgcaatgcatcaagggcacc 561 ||| |||||||||||||||||||| |||||||||||||| Sbjct: 557 ttgaaactgtggaagctgtcgcaaggcatcaagggcacc 595 Score = 111 bits (56), Expect = 3e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 179 tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 238 |||||||| ||||| ||||||||||| ||||||| | || ||||| ||| |||||||| Sbjct: 213 tcaaactcatggccgtgatccaaaagggagttggctgtaagctcttcgtccttgttgcat 272 Query: 239 gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 298 |||||||| || || | |||||||||||| ||||||||||| ||| ||||||||||| Sbjct: 273 gcaaagaaaacttctagcacaagctcacgggtgaaccccattccctcgagccgctggata 332 Query: 299 gcctcccgttcttctggagtaact 322 ||||||||||| ||||| |||||| Sbjct: 333 gcctcccgttcctctggggtaact 356 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 590 ttggccccaccacttggaacaccctgtgggaaaaggtttagaggattcgcattaggccca 649 |||| ||||||||||||||||||||| || |||||||| | |||||| ||||||||||| Sbjct: 624 ttggacccaccacttggaacaccctgaggaaaaaggttcaaaggatttgcattaggccct 683 Query: 650 gcagag 655 |||||| Sbjct: 684 gcagag 689
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 8737228 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 8737169 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 8737168 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 8737109 Query: 281 g 281 | Sbjct: 8737108 g 8737108 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 391 ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 450 |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || || Sbjct: 8736536 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 8736477 Query: 451 attttgtttccccagctcttgaagcattggctgt 484 ||| || ||||| ||||||||||||||||||||| Sbjct: 8736476 attctgcttcccaagctcttgaagcattggctgt 8736443 Score = 89.7 bits (45), Expect = 1e-14 Identities = 89/103 (86%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 612 cctgtgggaaaaggtttagaggattcgcattaggcccagcagagacaccaccagatggct 671 |||| ||||| ||||||||||||||||||||||| || | || ||||||||| ||||| Sbjct: 8735507 cctgggggaataggtttagaggattcgcattaggtcctg---aggcaccaccagctggct 8735451 Query: 672 gcactgccggtagaggtgcagcctgagcctgggatggagcctg 714 |||| | |||| ||||||||||||||||||| |||||| |||| Sbjct: 8735450 gcacaggcggtggaggtgcagcctgagcctgagatggaacctg 8735408 Score = 81.8 bits (41), Expect = 3e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 487 gatttggggattagcctggaccaatgcaagcagtgcttggaactg 531 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 8736325 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 8736281 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 529 ctgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccacaccagcaccagc 588 ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 8736202 ctgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggcaccagcagcagc 8736143 Query: 589 a 589 | Sbjct: 8736142 a 8736142 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 289 ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 339 |||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 8736733 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 8736683
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 7549 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 7490 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 7489 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 7430 Query: 281 g 281 | Sbjct: 7429 g 7429 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 391 ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 450 |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || || Sbjct: 6857 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 6798 Query: 451 attttgtttccccagctcttgaagcattggctgt 484 ||| || ||||| ||||||||||||||||||||| Sbjct: 6797 attctgcttcccaagctcttgaagcattggctgt 6764 Score = 89.7 bits (45), Expect = 1e-14 Identities = 89/103 (86%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 612 cctgtgggaaaaggtttagaggattcgcattaggcccagcagagacaccaccagatggct 671 |||| ||||| ||||||||||||||||||||||| || | || ||||||||| ||||| Sbjct: 5828 cctgggggaataggtttagaggattcgcattaggtcctg---aggcaccaccagctggct 5772 Query: 672 gcactgccggtagaggtgcagcctgagcctgggatggagcctg 714 |||| | |||| ||||||||||||||||||| |||||| |||| Sbjct: 5771 gcacaggcggtggaggtgcagcctgagcctgagatggaacctg 5729 Score = 81.8 bits (41), Expect = 3e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 487 gatttggggattagcctggaccaatgcaagcagtgcttggaactg 531 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 6646 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 6602 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 529 ctgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccacaccagcaccagc 588 ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 6523 ctgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggcaccagcagcagc 6464 Query: 589 a 589 | Sbjct: 6463 a 6463 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 289 ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 339 |||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 7054 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 7004
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 161 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 220 |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 152210 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 152151 Query: 221 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 280 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct: 152150 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 152091 Query: 281 g 281 | Sbjct: 152090 g 152090 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 391 ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 450 |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || || Sbjct: 151518 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 151459 Query: 451 attttgtttccccagctcttgaagcattggctgt 484 ||| || ||||| ||||||||||||||||||||| Sbjct: 151458 attctgcttcccaagctcttgaagcattggctgt 151425 Score = 89.7 bits (45), Expect = 1e-14 Identities = 89/103 (86%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 612 cctgtgggaaaaggtttagaggattcgcattaggcccagcagagacaccaccagatggct 671 |||| ||||| ||||||||||||||||||||||| || | || ||||||||| ||||| Sbjct: 150489 cctgggggaataggtttagaggattcgcattaggtcctg---aggcaccaccagctggct 150433 Query: 672 gcactgccggtagaggtgcagcctgagcctgggatggagcctg 714 |||| | |||| ||||||||||||||||||| |||||| |||| Sbjct: 150432 gcacaggcggtggaggtgcagcctgagcctgagatggaacctg 150390 Score = 81.8 bits (41), Expect = 3e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 487 gatttggggattagcctggaccaatgcaagcagtgcttggaactg 531 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 151307 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 151263 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 529 ctgtggaagctgtcgcaatgcatcaagggcaccggcaccggcacccacaccagcaccagc 588 ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 151184 ctgtggaagttgtcgcaatgcatcaagggcaccagcaccggcaccggcaccagcagcagc 151125 Query: 589 a 589 | Sbjct: 151124 a 151124 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 289 ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 339 |||||| |||||||||||||| |||||||||||| || |||||||||||| Sbjct: 151715 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 151665
>ref|XM_482516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1526 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Minus Query: 410 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 469 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 1029 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 970 Query: 470 tgaagcattggctgtaggatttggggattagcctggaccaa 510 ||||||| ||||| || ||||| || |||||||| ||||| Sbjct: 969 tgaagcaaaggctgcagaatttgagggttagcctgcaccaa 929
>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full insert sequence Length = 1526 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Minus Query: 410 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 469 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 1029 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 970 Query: 470 tgaagcattggctgtaggatttggggattagcctggaccaa 510 ||||||| ||||| || ||||| || |||||||| ||||| Sbjct: 969 tgaagcaaaggctgcagaatttgagggttagcctgcaccaa 929
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 77.8 bits (39), Expect = 5e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 410 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 469 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 20793697 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 20793638 Query: 470 tgaagca 476 ||||||| Sbjct: 20793637 tgaagca 20793631 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 673 cactgccggtagaggtgcagcctgagcc 700 ||||||||||||| |||||||||||||| Sbjct: 5549427 cactgccggtagacgtgcagcctgagcc 5549454
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 77.8 bits (39), Expect = 5e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 410 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 469 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 24830 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 24771 Query: 470 tgaagca 476 ||||||| Sbjct: 24770 tgaagca 24764
>dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full insert sequence Length = 621 Score = 77.8 bits (39), Expect = 5e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 410 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 469 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 70 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 11 Query: 470 tgaagca 476 ||||||| Sbjct: 10 tgaagca 4
>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full insert sequence Length = 2031 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 997 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 938 Query: 465 gctcttgaagcattggctgtaggatttggggatt 498 |||||||||| |||||||| ||||| ||||| Sbjct: 937 attcttgaagcaatggctgtaaaatttgaggatt 904
>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full insert sequence Length = 1513 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 997 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 938 Query: 465 gctcttgaagcattggctgtaggatttggggatt 498 |||||||||| |||||||| ||||| ||||| Sbjct: 937 attcttgaagcaatggctgtaaaatttgaggatt 904
>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds Length = 1533 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 991 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 932 Query: 465 gctcttgaagcattggctgtaggatttggggatt 498 |||||||||| |||||||| ||||| ||||| Sbjct: 931 attcttgaagcaatggctgtaaaatttgaggatt 898
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 69.9 bits (35), Expect = 1e-08 Identities = 68/79 (86%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 14311582 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 14311523 Query: 465 gctcttgaagcattggctg 483 |||||||||| |||||| Sbjct: 14311522 attcttgaagcaatggctg 14311504
>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1261_A08 Length = 162113 Score = 69.9 bits (35), Expect = 1e-08 Identities = 68/79 (86%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 128127 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 128068 Query: 465 gctcttgaagcattggctg 483 |||||||||| |||||| Sbjct: 128067 attcttgaagcaatggctg 128049
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 69.9 bits (35), Expect = 1e-08 Identities = 68/79 (86%) Strand = Plus / Minus Query: 405 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 464 |||| |||||||| || ||||||||||||| | ||| ||||| |||||||||||||||| Sbjct: 3385 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 3326 Query: 465 gctcttgaagcattggctg 483 |||||||||| |||||| Sbjct: 3325 attcttgaagcaatggctg 3307
>ref|XM_752001.1| Ustilago maydis 521 hypothetical protein (UM00947.1) partial mRNA Length = 2946 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 555 gggcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||||||| |||||||||||||| Sbjct: 2161 gggcaccggcaccggcaccagcaccagcaccagca 2127 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||| ||||| |||||||||||||| Sbjct: 2154 ggcaccggcaccagcaccagcaccagcaccagca 2121
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 1038193 ggcaccggcaccggcaccagcaccagcaccagca 1038160 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Minus Query: 560 ccggcaccggcacccacaccagcaccagca 589 |||||||||||||| |||||||||||||| Sbjct: 1038195 ccggcaccggcaccggcaccagcaccagca 1038166 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||| ||||| |||||||||||||| Sbjct: 1038187 ggcaccggcaccagcaccagcaccagcaccagca 1038154
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 868350 ggcaccggcaccggcaccagcaccagcaccagca 868383 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||| ||||| |||||||||||||| Sbjct: 868356 ggcaccggcaccagcaccagcaccagcaccagca 868389 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 560 ccggcaccggcacccacaccagcaccagca 589 |||||||||||||| |||||||||||||| Sbjct: 868348 ccggcaccggcaccggcaccagcaccagca 868377
>gb|AC097674.6| Rattus norvegicus 2 CH230-75D18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227596 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 188638 ggcaccggcaccggcaccggcaccagcaccagca 188671 Score = 46.1 bits (23), Expect = 0.17 Identities = 29/31 (93%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcacca 586 |||||||||||||||||| ||||||||||| Sbjct: 188644 ggcaccggcaccggcaccagcaccagcacca 188674 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||| ||||||||| Sbjct: 188632 ggcaccggcaccggcaccggcaccggcaccagca 188665
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 631945 ggcaccggcaccggcaccggcaccagcaccagca 631912 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 631939 ggcaccggcaccggcaccagcaccagcaccagca 631906 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||| ||||||||| Sbjct: 631951 ggcaccggcaccggcaccggcaccggcaccagca 631918 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||| ||||| |||||||||||||| Sbjct: 631933 ggcaccggcaccagcaccagcaccagcaccagca 631900
>gb|AY609404.1| Sus scrofa clone Clu_10503.scr.msk.p1.Contig5, mRNA sequence Length = 1921 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||||||||||||| Sbjct: 327 ggcaccggcaccggcaccggcaccagcaccagca 360 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||| ||||||||| Sbjct: 321 ggcaccggcaccggcaccggcaccggcaccagca 354
>ref|XM_364590.1| Magnaporthe grisea 70-15 hypothetical protein (MG09336.4) partial mRNA Length = 4695 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 561 cggcaccggcacccacaccagcaccagca 589 ||||||||||||| ||||||||||||||| Sbjct: 1391 cggcaccggcaccaacaccagcaccagca 1419
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||||| |||||||||||||| Sbjct: 2134681 gcaccggcaccggcaccagcaccagcaccagca 2134649 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||| ||||| |||||||||||||| Sbjct: 2134676 ggcaccggcaccagcaccagcaccagcaccagca 2134643 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||||||||| ||||| |||||||||||||| Sbjct: 2134711 gcaccggcaccagcaccagcaccagcaccagca 2134679 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||| ||||||||||| |||||||||||||| Sbjct: 2134687 gcaccagcaccggcaccggcaccagcaccagca 2134655
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Plus Query: 202 aagatagttggcagccagttcttcatccctgttgcatgcaaagaagacctcca 254 |||||||||||||||||| || || | | |||||||||| ||||| ||||||| Sbjct: 128966 aagatagttggcagccagctcctcgttcttgttgcatgcgaagaacacctcca 129018 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Plus Query: 445 ctgtggattttgtttccccagctcttgaagcattggctgt 484 |||||||||||| ||||||||||| || ||||| |||||| Sbjct: 129395 ctgtggattttgcttccccagctcctgtagcataggctgt 129434
>ref|XM_480516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 282 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 673 cactgccggtagaggtgcagcctgagcc 700 ||||||||||||| |||||||||||||| Sbjct: 131 cactgccggtagacgtgcagcctgagcc 158
>dbj|AP005499.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0412D08 Length = 150188 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 673 cactgccggtagaggtgcagcctgagcc 700 ||||||||||||| |||||||||||||| Sbjct: 4803 cactgccggtagacgtgcagcctgagcc 4830
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 673 cactgccggtagaggtgcagcctgagcc 700 ||||||||||||| |||||||||||||| Sbjct: 75655 cactgccggtagacgtgcagcctgagcc 75682
>gb|AY107093.1| Zea mays PCO127836 mRNA sequence Length = 504 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 555 gggcaccggcaccggcacccacaccagcacca 586 ||||||||||||||||||| ||||||||||| Sbjct: 354 gggcaccggcaccggcaccagcaccagcacca 323
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 449 ggattttgtttccccagctcttgaagcattggctg 483 |||||||||||||||| |||||||||| |||||| Sbjct: 108144 ggattttgtttccccaattcttgaagcaatggctg 108178
>gb|AC155270.3| Mus musculus BAC clone RP23-195H19 from chromosome 12, complete sequence Length = 215502 Score = 46.1 bits (23), Expect = 0.17 Identities = 29/31 (93%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcacca 586 |||||||||||||||||| ||||||||||| Sbjct: 108888 ggcaccggcaccggcaccggcaccagcacca 108858 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||| ||||||||| Sbjct: 108894 ggcaccggcaccggcaccggcaccggcaccagca 108861
>emb|BX324153.4| Zebrafish DNA sequence from clone CH211-160M3 in linkage group 7, complete sequence Length = 95870 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 tgttcctcaaactcgtggccatg 195 ||||||||||||||||||||||| Sbjct: 18296 tgttcctcaaactcgtggccatg 18318
>ref|XM_678316.1| PREDICTED: Danio rerio similar to gonadotropin-releasing hormone receptor (LOC555723), mRNA Length = 1281 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 tgttcctcaaactcgtggccatg 195 ||||||||||||||||||||||| Sbjct: 362 tgttcctcaaactcgtggccatg 384
>gb|AY108301.1| Zea mays PCO104381 mRNA sequence Length = 1521 Score = 46.1 bits (23), Expect = 0.17 Identities = 59/71 (83%) Strand = Plus / Minus Query: 449 ggattttgtttccccagctcttgaagcattggctgtaggatttggggattagcctggacc 508 ||||||||||| |||| |||||||||| |||||| | || || ||||||||||| ||| Sbjct: 1006 ggattttgtttacccaattcttgaagcaatggctgcaaaatctgaggattagcctgcacc 947 Query: 509 aatgcaagcag 519 || ||||||| Sbjct: 946 aaaccaagcag 936
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 46.1 bits (23), Expect = 0.17 Identities = 29/31 (93%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcacca 586 |||||||||||||||||| ||||||||||| Sbjct: 8326 ggcaccggcaccggcaccggcaccagcacca 8356 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 |||||||||||||||||| |||| ||||||||| Sbjct: 8320 ggcaccggcaccggcaccggcaccggcaccagca 8353
>gb|AC129945.9| Mus musculus chromosome 3, clone RP24-512A14, complete sequence Length = 153430 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||||| |||||||||||||| Sbjct: 124409 ggcaccggcaccggcactagcaccagcaccagca 124376 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||||| ||| |||||||||| Sbjct: 124414 gcaccggcaccggcaccggcactagcaccagca 124382
>ref|XM_360477.1| Magnaporthe grisea 70-15 predicted protein (MG10789.4) partial mRNA Length = 933 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Plus Query: 557 gcaccggcaccggcacccacaccagcacca 586 |||||||||||||||||| |||| |||||| Sbjct: 256 gcaccggcaccggcacccgcacccgcacca 285
>ref|XM_365030.1| Magnaporthe grisea 70-15 hypothetical protein (MG09875.4) partial mRNA Length = 828 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||| || |||||||||||||| Sbjct: 654 ggcaccggcaccggctccggcaccagcaccagca 621 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcaccagc 588 ||||||||| |||||||| ||||||||||||| Sbjct: 648 ggcaccggctccggcaccagcaccagcaccagc 616
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccacaccagcacc 585 ||||||||||||||||||| |||| ||||| Sbjct: 1993118 ggcaccggcaccggcacccgcacccgcacc 1993089
>emb|AL121938.10|HSDJ167O5 Human DNA sequence from clone RP1-167O5 on chromosome 6q22.1-23.3 Contains the 3' end of the TPD52L1 gene encoding two variants of tumor protein D52-like 1 protein, the gene for CGI-130 protein and a CpG island, complete sequence Length = 156054 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Plus Query: 472 aagcattggctgtaggatttggggat 497 ||||||||||| |||||||||||||| Sbjct: 33386 aagcattggctttaggatttggggat 33411
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 556 ggcaccggcaccggcacccaca 577 |||||||||||||||||||||| Sbjct: 173742 ggcaccggcaccggcacccaca 173721
>gb|AY106748.1| Zea mays PCO104379 mRNA sequence Length = 779 Score = 44.1 bits (22), Expect = 0.66 Identities = 52/62 (83%) Strand = Plus / Minus Query: 449 ggattttgtttccccagctcttgaagcattggctgtaggatttggggattagcctggacc 508 ||||||||||||| || |||||||||| |||||| | ||||| || |||||||| ||| Sbjct: 260 ggattttgtttcctcaattcttgaagcaatggctgcaaaatttgagggttagcctgaacc 201 Query: 509 aa 510 || Sbjct: 200 aa 199
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcacc 585 |||||||||||||||||| |||| ||||| Sbjct: 1157751 gcaccggcaccggcacccgcaccggcacc 1157723
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 gcacccacaccagcaccagca 589 ||||||||||||||||||||| Sbjct: 1164534 gcacccacaccagcaccagca 1164514
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence Length = 198036 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 691 agcctgagcctgggatggagcctgc 715 |||||||||| |||||||||||||| Sbjct: 59009 agcctgagccagggatggagcctgc 58985
>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence Length = 146078 Score = 42.1 bits (21), Expect = 2.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 202 aagatagttggcagccagttcttcatccctgttgcatgcaaagaagacctccaacac 258 ||||||||| ||||||| ||||| | | ||||||| || ||||| ||||||||||| Sbjct: 128332 aagatagttagcagccaactcttcgttcttgttgcacgcgaagaacacctccaacac 128388
>ref|XM_572203.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH00090) partial mRNA Length = 5123 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 gcacccacaccagcaccagca 589 ||||||||||||||||||||| Sbjct: 2613 gcacccacaccagcaccagca 2633
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagc 588 |||||||||||||||||| | ||||||||||| Sbjct: 1484554 ggcaccggcaccggcaccagcgccagcaccagc 1484586 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||||||||||||||| ||||||| |||||| Sbjct: 1484549 gcaccggcaccggcaccggcaccagcgccagca 1484581
>ref|XM_503441.1| Yarrowia lipolytica CLIB122, YALI0E02024g predicted mRNA Length = 3375 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||| ||||| ||||| ||||||||||||||| Sbjct: 1544 gcaccagcaccagcaccgacaccagcaccagca 1512
>emb|BX295540.1|NC49D12 Neurospora crassa DNA linkage group VI Cosmid contig 49D12 Length = 95032 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 556 ggcaccggcaccggcacccacaccagcaccagc 588 |||||||||||||||||| |||| |||||||| Sbjct: 64703 ggcaccggcaccggcaccggcaccggcaccagc 64735
>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete sequence Length = 185080 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 61617 caccagcaccgccacccacaccagcacca 61589 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 61509 caccagcaccgccacccacaccagcacca 61481 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 60070 caccagcaccgccacccacaccagcacca 60042
>emb|AL116512.1|CNS01D8O Botrytis cinerea strain T4 cDNA library Length = 720 Score = 42.1 bits (21), Expect = 2.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 207 agttggcagccagttcttcatccctgttgcatgcaaa 243 |||||||||||| |||||||| | ||| ||||||||| Sbjct: 352 agttggcagccaattcttcattcttgtcgcatgcaaa 316
>gb|AF190427.1|AF190427 Colletotrichum lindemuthianum putative GAL4-like transcriptional activator (CLTA1) gene, complete cds Length = 4130 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 gcacccacaccagcaccagca 589 ||||||||||||||||||||| Sbjct: 3654 gcacccacaccagcaccagca 3674
>gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fib-H) gene, complete cds Length = 80009 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||| ||||||||||| |||||||||||||| Sbjct: 78707 gcaccagcaccggcaccagcaccagcaccagca 78675
>emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102 Length = 340000 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 141765 caccagcaccgccacccacaccagcacca 141737
>emb|BX322563.1|HSQ21G24 Homo sapiens chromosome 21 from cosmid LL21NC02-21G24 map 21q22.3 region D21S171-LA161, complete sequence Length = 38665 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 34470 caccagcaccgccacccacaccagcacca 34442
>emb|BX322561.1|HSE12310 Homo sapiens chromosome 21 from PAC RPCI-1 RP1-310E12 map 21q22.3 region D21S171-LA161, complete sequence Length = 131563 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 caccggcaccggcacccacaccagcacca 586 |||| |||||| ||||||||||||||||| Sbjct: 2077 caccagcaccgccacccacaccagcacca 2049
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 557 gcaccggcaccggcacccacaccagcaccagca 589 ||||| ||||| ||||| ||||||||||||||| Sbjct: 214270 gcaccagcaccagcaccgacaccagcaccagca 214238 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,675,111 Number of Sequences: 3902068 Number of extensions: 6675111 Number of successful extensions: 143933 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143062 Number of HSP's gapped (non-prelim): 822 length of query: 750 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 727 effective length of database: 17,143,297,704 effective search space: 12463177430808 effective search space used: 12463177430808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)