ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5) 33 0.53
2CI150_RAT (Q5BJW5) Protein C9orf150 homolog 30 5.8
3CI150_MOUSE (Q8K2P1) Protein C9orf150 homolog 30 5.8
4CP1A1_RABIT (P05176) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1)... 30 7.6
5NEU1_CATCO (P15210) Isoticin-neurophysin IT 1 precursor [Contain... 29 10.0

>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)|
          Length = 427

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 26/94 (27%), Positives = 34/94 (36%)
 Frame = +1

Query: 157 PSTPSPRNPKTLISHKVPAESYKQHPPIPGRHRLWLRLGRYLIVFEPPTFVLD**KHPWQ 336
           P   SP  PK    +K P    K + P P  H        Y+    PP         P +
Sbjct: 328 PVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP---------PVK 378

Query: 337 MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDP 438
             S   V+H        Y  + PP  P++HYS P
Sbjct: 379 HYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYSPP 412



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>CI150_RAT (Q5BJW5) Protein C9orf150 homolog|
          Length = 221

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 SSSS*PFAGSYRRRHPPGTQRL*FLIRCRRSPISNIRRSLVGIV 256
           SSSS P +GS RR HP   +RL   +   R  + N+R + V ++
Sbjct: 65  SSSSSPASGSPRRSHPSALERLETKLHILRQEMVNLRATDVRLM 108



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>CI150_MOUSE (Q8K2P1) Protein C9orf150 homolog|
          Length = 221

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 SSSS*PFAGSYRRRHPPGTQRL*FLIRCRRSPISNIRRSLVGIV 256
           SSSS P +GS RR HP   +RL   +   R  + N+R + V ++
Sbjct: 65  SSSSSPASGSPRRSHPSALERLETKLHILRQEMVNLRATDVRLM 108



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>CP1A1_RABIT (P05176) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1) (P450 isozyme|
           6) (P-450 PHPAH1) (P450 LM6)
          Length = 518

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 432 RSRRPTQ*DRNPMMLSHANVSRAMACFEHSNFFKVTMPKTRPGQLRLGARCRPKGR 599
           R+RRP   DR  +    A +   M  F H++F   T+P +      LG    PKGR
Sbjct: 357 RARRPRFSDRPQLPYLEAVI---METFRHTSFLPFTIPHSTTRDTSLGGFYIPKGR 409



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>NEU1_CATCO (P15210) Isoticin-neurophysin IT 1 precursor [Contains: Isotocin|
           (IT); Neurophysin IT 1]
          Length = 154

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 341 SICQGCFH*SRTKVGGSKTIRYRPSLNHKRCRPGIGGCC 225
           S+C  C+  S   +GG + I+  PS     C PG  G C
Sbjct: 16  SVCSACYI-SNCPIGGKRAIQDSPSRQCMSCGPGDRGRC 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,987,652
Number of Sequences: 219361
Number of extensions: 2037342
Number of successful extensions: 4608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4608
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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