ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUR9_RHOBA (Q7UKJ8) Bifunctional purine biosynthesis protein pur... 30 9.1
2GET1_HUMAN (O95210) Genethonin-1 (GENX-3414) 30 9.1

>PUR9_RHOBA (Q7UKJ8) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 523

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
 Frame = -1

Query: 236 PFYWDKVLANPNQSMAWHDIKFG---SFHVNEDMI-----EALFGYGAGNRNKTKDKELA 81
           P  W+ V   P     W DI FG     HV  + I      +L G GAG  ++    E++
Sbjct: 395 PLQWNTVTETPVDDDLWDDISFGWEMVRHVKSNAIVLAKDTSLIGVGAGQMSRVDSVEIS 454

Query: 80  M 78
           +
Sbjct: 455 I 455



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>GET1_HUMAN (O95210) Genethonin-1 (GENX-3414)|
          Length = 358

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 671 PLLHMQLANTXGSSPIIHASSSQLHKDDQRVRTSKAGA-SMSRCFPCCFKTSTDV 510
           P+L++      G S ++ A   Q+H   +RV    AG+  +S  F   + TSTDV
Sbjct: 224 PVLNLNQGMDNGRSTLVEARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDV 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,198,668
Number of Sequences: 219361
Number of extensions: 1597004
Number of successful extensions: 3386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3386
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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