Clone Information

BLAST Search Result

Clone Name	rbasd26p23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ234614.1\|HVU234614 Hordeum vulgare genomic DNA fragment; c...	575	e-161
2	emb\|AJ427980.1\|OSA427980 Oryza sativa HAK11 gene for putative po...	260	5e-66
3	dbj\|AK072123.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	5e-66
4	emb\|AL731610.4\|OSJN00255 Oryza sativa genomic DNA, chromosome 4,...	252	1e-63
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	252	1e-63
6	ref\|XM_473875.1\| Oryza sativa (japonica cultivar-group), predic...	250	5e-63
7	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
8	dbj\|AP003875.3\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
9	dbj\|AK069377.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	2e-22
10	gb\|AY108668.1\| Zea mays PCO064352 mRNA sequence	115	2e-22
11	emb\|AJ427981.1\|OSA427981 Oryza sativa HAK12 gene for putative po...	107	4e-20
12	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	6e-10
13	dbj\|AP005396.3\| Oryza sativa (japonica cultivar-group) genomic D...	74	6e-10
14	dbj\|AK065464.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	6e-10
15	gb\|AC115741.9\| Mus musculus chromosome 14, clone RP23-476L2, com...	40	8.4
16	gb\|AC112676.8\| Mus musculus chromosome 9, clone RP23-174F7, comp...	40	8.4
17	gb\|AC124349.4\| Mus musculus BAC clone RP24-463G19 from chromosom...	40	8.4
18	gb\|AC124439.4\| Mus musculus BAC clone RP24-261N14 from chromosom...	40	8.4
19	emb\|AL356287.16\| Human DNA sequence from clone RP11-57O2 on chro...	40	8.4
20	gb\|CP000091.1\| Ralstonia eutropha JMP134 chromosome 2, complete ...	40	8.4
21	emb\|CR394564.8\| Zebrafish DNA sequence from clone DKEY-1K1 in li...	40	8.4
22	gb\|AC104185.2\| Homo sapiens chromosome 3 clone RP11-268J19, comp...	40	8.4
23	gb\|AC022260.6\| Homo sapiens chromosome 8, clone RP11-426C8, comp...	40	8.4
24	gb\|AC159652.6\| Mus musculus 10 BAC RP24-123H21 (Roswell Park Can...	40	8.4
25	gb\|AC159251.2\| Mus musculus BAC clone RP24-113B8 from chromosome...	40	8.4
26	gb\|AC019252.10\| Homo sapiens chromosome 8, clone RP11-390M9, com...	40	8.4
27	gb\|AC019144.9\| Homo sapiens BAC clone RP11-733L22 from 2, comple...	40	8.4
28	gb\|AC098975.3\| Homo sapiens BAC clone RP11-231C6 from 2, complet...	40	8.4
29	gb\|AC063926.36\| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Can...	40	8.4
30	gb\|AC016970.16\| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc...	40	8.4
31	dbj\|BS000105.1\| Pan troglodytes chromosome 22 clone:RP43-117B17,...	40	8.4
32	gb\|AC154416.2\| Mus musculus BAC clone RP24-232F23 from 17, compl...	40	8.4
33	gb\|AC153931.2\| Mus musculus 10 BAC RP24-147A18 (Roswell Park Can...	40	8.4
34	emb\|AJ717885.1\| Nicotiana tabacum cDNA-AFLP-fragment BSTT13-4-35...	40	8.4
35	emb\|AL163952.5\|CNS05TBP Human chromosome 14 DNA sequence BAC R-1...	40	8.4
36	dbj\|AP001693.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.4
37	emb\|AL731590.4\|OSJN00233 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
38	gb\|AC133187.3\| Mus musculus BAC clone RP23-324O10 from 1, comple...	40	8.4
39	emb\|AL109616.2\|HS10L11 Homo sapiens chromosome 21 Cosmid LLNLc11...	40	8.4
40	gb\|AC170595.2\| Mus musculus BAC clone RP23-444B8 from chromosome...	40	8.4
41	dbj\|AP000222.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	40	8.4
42	dbj\|AP000137.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	40	8.4
43	dbj\|AP000085.1\| Homo sapiens genomic DNA of 21q22.1, APP related...	40	8.4

>emb|AJ234614.1|HVU234614 Hordeum vulgare genomic DNA fragment; clone MWG0882.uni
          Length = 351

 Score =  575 bits (290), Expect = e-161
 Identities = 307/310 (99%), Gaps = 2/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagaaagcatctgaatcttacatgttacaacacaaaacatgaacgtttctagcatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 308 gaaagaaagcatctgaatcttacatgttacaacacaaaacatga-cgtttctagcatgaa 250

                                                                       
Query: 61  cactgcctgaaagatgcagagtgcaaaacaaaatctgaagctattccctatttatattct 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 cactgcctgaaagatgcagagtgcaaaacaaaatctgaagctat-ccctatttatattct 191

                                                                       
Query: 121 acgactgataagtttcctatatacattttaaagcagccagcccctctcttccctccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acgactgataagtttcctatatacattttaaagcagccagcccctctcttccctccagag 131

                                                                       
Query: 181 aacggcacatcagagctttttgctcagaacccaatacaaactaacatcggaaacgatgtt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aatggcacatcagagctttttgctcagaacccaatacaaactaacatcggaaacgatgtt 71

                                                                       
Query: 241 tcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcac 11

                     
Query: 301 actgttctcc 310
           ||||||||||
Sbjct: 10  actgttctcc 1

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>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9
          Length = 4562

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/343 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 297
            |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 4076 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 4017

                                                                        
Query: 298  cacactgttctccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatctt 357
            |||||||||||||||||||||| |||||||||||||||| | ||||| ||| || |||||
Sbjct: 4016 cacactgttctccctgcagatcttcctcatgaaggcatacatgtaatttaccgcgatctt 3957

                                                                        
Query: 358  cttgatgatccctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaac 417
            |||||||||||| ||||| ||||  ||| | || ||||||||||| |||||||| || ||
Sbjct: 3956 cttgatgatccccgaatccctcctcgcgaggacgatggtgttcccgaggatgtggacgac 3897

                                                                        
Query: 418  accagcatccctgcaccggttcaagaactccacttcgttgctgactgtacggttggtttg 477
            ||| |||||| | |||||||||| |||||||| ||| |  ||||| ||  || |||  ||
Sbjct: 3896 accggcatccttacaccggttcaggaactccagttcatcactgacagtgtggctggcctg 3837

                                                                        
Query: 478  gcttgagtacgtcaacagattgtttaccccgaggggtgactgcactggcacaatagaatc 537
            |||||| ||| |||  ||  ||||  |||  || |||||||||||||||||||| || ||
Sbjct: 3836 gcttgaatacctcagtaggctgttccccctcagaggtgactgcactggcacaatggagtc 3777

                                                       
Query: 538  ctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
            ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3776 ctgtgatgagtagctcaggtcaccattggagcacattgtgttg 3734

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>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full
            insert sequence
          Length = 3453

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/343 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 297
            |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 3247 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 3188

                                                                        
Query: 298  cacactgttctccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatctt 357
            |||||||||||||||||||||| |||||||||||||||| | ||||| ||| || |||||
Sbjct: 3187 cacactgttctccctgcagatcttcctcatgaaggcatacatgtaatttaccgcgatctt 3128

                                                                        
Query: 358  cttgatgatccctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaac 417
            |||||||||||| ||||| ||||  ||| | || ||||||||||| |||||||| || ||
Sbjct: 3127 cttgatgatccccgaatccctcctcgcgaggacgatggtgttcccgaggatgtggacgac 3068

                                                                        
Query: 418  accagcatccctgcaccggttcaagaactccacttcgttgctgactgtacggttggtttg 477
            ||| |||||| | |||||||||| |||||||| ||| |  ||||| ||  || |||  ||
Sbjct: 3067 accggcatccttacaccggttcaggaactccagttcatcactgacagtgtggctggcctg 3008

                                                                        
Query: 478  gcttgagtacgtcaacagattgtttaccccgaggggtgactgcactggcacaatagaatc 537
            |||||| ||| |||  ||  ||||  |||  || |||||||||||||||||||| || ||
Sbjct: 3007 gcttgaatacctcagtaggctgttccccctcagaggtgactgcactggcacaatggagtc 2948

                                                       
Query: 538  ctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
            ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2947 ctgtgatgagtagctcaggtcaccattggagcacattgtgttg 2905

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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score =  252 bits (127), Expect = 1e-63
 Identities = 289/343 (84%)
 Strand = Plus / Plus

                                                                          
Query: 238    gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 297
              |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 144518 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 144577

                                                                          
Query: 298    cacactgttctccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatctt 357
              |||||||||||||||||||||| |||||||||||||||| | ||||| ||| || |||||
Sbjct: 144578 cacactgttctccctgcagatcttcctcatgaaggcatacatgtaatttaccgcgatctt 144637

                                                                          
Query: 358    cttgatgatccctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaac 417
              |||||||||||| ||||| ||||  ||| | || ||||||||||| |||||||| || ||
Sbjct: 144638 cttgatgatccccgaatccctcctcgcgaggacgatggtgttcccgaggatgtggacgac 144697

                                                                          
Query: 418    accagcatccctgcaccggttcaagaactccacttcgttgctgactgtacggttggtttg 477
              ||| |||||| | |||||||||| |||||||| ||| |  ||||| ||  || |||  ||
Sbjct: 144698 accggcatccttacaccggttcaggaactccagttcatcactgacagtgtggctggcctg 144757

                                                                          
Query: 478    gcttgagtacgtcaacagattgtttaccccgaggggtgactgcactggcacaatagaatc 537
              |||||| ||| |||  ||  ||||  |||  || |||||||||||||||||||| || ||
Sbjct: 144758 gcttgaatacctcagtaggctgttccccctcagaggtgactgcactggcacaatggagtc 144817

                                                         
Query: 538    ctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
              ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 144818 ctgtgatgagtagctcaggtcaccatgggagcacattgtgttg 144860

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  252 bits (127), Expect = 1e-63
 Identities = 289/343 (84%)
 Strand = Plus / Plus

                                                                            
Query: 238      gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 297
                |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 31162437 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 31162496

                                                                            
Query: 298      cacactgttctccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatctt 357
                |||||||||||||||||||||| |||||||||||||||| | ||||| ||| || |||||
Sbjct: 31162497 cacactgttctccctgcagatcttcctcatgaaggcatacatgtaatttaccgcgatctt 31162556

                                                                            
Query: 358      cttgatgatccctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaac 417
                |||||||||||| ||||| ||||  ||| | || ||||||||||| |||||||| || ||
Sbjct: 31162557 cttgatgatccccgaatccctcctcgcgaggacgatggtgttcccgaggatgtggacgac 31162616

                                                                            
Query: 418      accagcatccctgcaccggttcaagaactccacttcgttgctgactgtacggttggtttg 477
                ||| |||||| | |||||||||| |||||||| ||| |  ||||| ||  || |||  ||
Sbjct: 31162617 accggcatccttacaccggttcaggaactccagttcatcactgacagtgtggctggcctg 31162676

                                                                            
Query: 478      gcttgagtacgtcaacagattgtttaccccgaggggtgactgcactggcacaatagaatc 537
                |||||| ||| |||  ||  ||||  |||  || |||||||||||||||||||| || ||
Sbjct: 31162677 gcttgaatacctcagtaggctgttccccctcagaggtgactgcactggcacaatggagtc 31162736

                                                           
Query: 538      ctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
                ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 31162737 ctgtgatgagtagctcaggtcaccatgggagcacattgtgttg 31162779

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>ref|XM_473875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score =  250 bits (126), Expect = 5e-63
 Identities = 279/330 (84%)
 Strand = Plus / Minus

                                                                        
Query: 251  tatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctcc 310
            |||||||| ||||||||||| | ||||||||| |||| |||||| |||||||||||||||
Sbjct: 2207 tatatttggccaacattaagcaagctctcatggggaacattgaagatcacactgttctcc 2148

                                                                        
Query: 311  ctgcagatcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatccct 370
            ||||||||| |||||||||||||||| | ||||| ||| || ||||||||||||||||| 
Sbjct: 2147 ctgcagatcttcctcatgaaggcatacatgtaatttaccgcgatcttcttgatgatcccc 2088

                                                                        
Query: 371  gaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatccctg 430
            ||||| ||||  ||| | || ||||||||||| |||||||| || ||||| |||||| | 
Sbjct: 2087 gaatccctcctcgcgaggacgatggtgttcccgaggatgtggacgacaccggcatcctta 2028

                                                                        
Query: 431  caccggttcaagaactccacttcgttgctgactgtacggttggtttggcttgagtacgtc 490
            |||||||||| |||||||| ||| |  ||||| ||  || |||  |||||||| ||| ||
Sbjct: 2027 caccggttcaggaactccagttcatcactgacagtgtggctggcctggcttgaatacctc 1968

                                                                        
Query: 491  aacagattgtttaccccgaggggtgactgcactggcacaatagaatcctgtgatgagtag 550
            |  ||  ||||  |||  || |||||||||||||||||||| || |||||||||||||||
Sbjct: 1967 agtaggctgttccccctcagaggtgactgcactggcacaatggagtcctgtgatgagtag 1908

                                          
Query: 551  ctaaggtcaccattggagcacattgtgttg 580
            || |||||||||| ||||||||||||||||
Sbjct: 1907 ctcaggtcaccatgggagcacattgtgttg 1878

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  115 bits (58), Expect = 2e-22
 Identities = 166/202 (82%)
 Strand = Plus / Minus

                                                                           
Query: 248     tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 307
               |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 6204820 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 6204761

                                                                           
Query: 308     tccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatc 367
               |||||||||||| |||| | ||| ||| | |  ||||  ||||||| |||||||||||||
Sbjct: 6204760 tccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttcttgatgatc 6204701

                                                                           
Query: 368     cctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatcc 427
               ||||||||    || ||| | || |  |||||||| ||||||||||| |||||||| |||
Sbjct: 6204700 cctgaatcagggcgcgcgtgaaccacagtgttccccaggatgtgcacgacaccagcgtcc 6204641

                                     
Query: 428     ctgcaccggttcaagaactcca 449
                |||||||||||| ||||||||
Sbjct: 6204640 ttgcaccggttcaggaactcca 6204619



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 522     ctggcacaatagaatcctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
               |||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 6204540 ctggaacaatggagtcctgtgatgagtagctcaggtcaccagtggagcacattgtgttg 6204482

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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score =  115 bits (58), Expect = 2e-22
 Identities = 166/202 (82%)
 Strand = Plus / Minus

                                                                         
Query: 248   tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 307
             |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 68213 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 68154

                                                                         
Query: 308   tccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatc 367
             |||||||||||| |||| | ||| ||| | |  ||||  ||||||| |||||||||||||
Sbjct: 68153 tccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttcttgatgatc 68094

                                                                         
Query: 368   cctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatcc 427
             ||||||||    || ||| | || |  |||||||| ||||||||||| |||||||| |||
Sbjct: 68093 cctgaatcagggcgcgcgtgaaccacagtgttccccaggatgtgcacgacaccagcgtcc 68034

                                   
Query: 428   ctgcaccggttcaagaactcca 449
              |||||||||||| ||||||||
Sbjct: 68033 ttgcaccggttcaggaactcca 68012



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 522   ctggcacaatagaatcctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
             |||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 67933 ctggaacaatggagtcctgtgatgagtagctcaggtcaccagtggagcacattgtgttg 67875

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>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full
            insert sequence
          Length = 3200

 Score =  115 bits (58), Expect = 2e-22
 Identities = 166/202 (82%)
 Strand = Plus / Minus

                                                                        
Query: 248  tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 307
            |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 2945 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 2886

                                                                        
Query: 308  tccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatc 367
            |||||||||||| |||| | ||| ||| | |  ||||  ||||||| |||||||||||||
Sbjct: 2885 tccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttcttgatgatc 2826

                                                                        
Query: 368  cctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatcc 427
            ||||||||    || ||| | || |  |||||||| ||||||||||| |||||||| |||
Sbjct: 2825 cctgaatcagggcgcgcgtgaaccacagtgttccccaggatgtgcacgacaccagcgtcc 2766

                                  
Query: 428  ctgcaccggttcaagaactcca 449
             |||||||||||| ||||||||
Sbjct: 2765 ttgcaccggttcaggaactcca 2744



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 522  ctggcacaatagaatcctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
            |||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 2665 ctggaacaatggagtcctgtgatgagtagctcaggtcaccagtggagcacattgtgttg 2607

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>gb|AY108668.1| Zea mays PCO064352 mRNA sequence
          Length = 1690

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 257  tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 316
            ||||||||||| |||||||||||||| |||| |||||| ||  | |||||||||||||||
Sbjct: 1494 tgcccaacattcagtaggctctcatggggaacattgaagatggcgctgttctccctgcag 1435

                                                                        
Query: 317  atcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatccctgaatct 376
            ||| |||| | ||| ||||| |||||||  | ||||||||||||||||| ||||||||||
Sbjct: 1434 atcttcctaaggaaagcatacaagtaattgatagcaatcttcttgatgaaccctgaatct 1375

              
Query: 377  ct 378
            ||
Sbjct: 1374 ct 1373

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>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9
          Length = 5418

 Score =  107 bits (54), Expect = 4e-20
 Identities = 165/202 (81%)
 Strand = Plus / Minus

                                                                        
Query: 248  tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 307
            |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 4915 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 4856

                                                                        
Query: 308  tccctgcagatcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatc 367
            |||||||||||| |||| | ||| ||| | |  ||||  ||||||| |||||||||||||
Sbjct: 4855 tccctgcagatcttcctgaggaatgcaaacacataattcacagcaaccttcttgatgatc 4796

                                                                        
Query: 368  cctgaatctctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatcc 427
            ||||||||    || ||| | || |  |||||||| | ||||||||| |||||||| |||
Sbjct: 4795 cctgaatcagggcgcgcgtgaaccacagtgttccccaagatgtgcacgacaccagcgtcc 4736

                                  
Query: 428  ctgcaccggttcaagaactcca 449
             |||||||||||| ||||||||
Sbjct: 4735 ttgcaccggttcaggaactcca 4714



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 522  ctggcacaatagaatcctgtgatgagtagctaaggtcaccattggagcacattgtgttg 580
            |||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 4635 ctggaacaatggagtcctgtgatgagtagctcaggtcaccagtggagcacattgtgttg 4577

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 142/177 (80%)
 Strand = Plus / Plus

                                                                            
Query: 257      tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 316
                ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 22066566 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 22066625

                                                                            
Query: 317      atcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatccctgaatct 376
                ||| |||||| ||| ||||| | ||| |  |   |||||||||||| || ||||||||| 
Sbjct: 22066626 atcttcctcaggaaagcatacatgtagttgatgacaatcttcttgacgaaccctgaatcc 22066685

                                                                         
Query: 377      ctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatccctgcac 433
                || ||||| |  |  |  |||||||| ||||||||||| || || || |||||||||
Sbjct: 22066686 ctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccggcgtccctgcac 22066742

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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0635G10
          Length = 146728

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 142/177 (80%)
 Strand = Plus / Plus

                                                                          
Query: 257    tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 316
              ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 108630 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 108689

                                                                          
Query: 317    atcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatccctgaatct 376
              ||| |||||| ||| ||||| | ||| |  |   |||||||||||| || ||||||||| 
Sbjct: 108690 atcttcctcaggaaagcatacatgtagttgatgacaatcttcttgacgaaccctgaatcc 108749

                                                                       
Query: 377    ctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatccctgcac 433
              || ||||| |  |  |  |||||||| ||||||||||| || || || |||||||||
Sbjct: 108750 ctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccggcgtccctgcac 108806

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>dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full
            insert sequence
          Length = 2893

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 142/177 (80%)
 Strand = Plus / Minus

                                                                        
Query: 257  tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 316
            ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 2811 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 2752

                                                                        
Query: 317  atcctcctcatgaaggcatagaagtaatctacagcaatcttcttgatgatccctgaatct 376
            ||| |||||| ||| ||||| | ||| |  |   |||||||||||| || ||||||||| 
Sbjct: 2751 atcttcctcaggaaagcatacatgtagttgatgacaatcttcttgacgaaccctgaatcc 2692

                                                                     
Query: 377  ctccgagcgcgcacaatggtgttccctaggatgtgcacaacaccagcatccctgcac 433
            || ||||| |  |  |  |||||||| ||||||||||| || || || |||||||||
Sbjct: 2691 ctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccggcgtccctgcac 2635

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>gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, complete sequence
          Length = 188141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    tagaagtaatctacagcaat 354
              ||||||||||||||||||||
Sbjct: 185683 tagaagtaatctacagcaat 185664

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>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence
          Length = 230293

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    ccagcccctctcttccctcc 176
              ||||||||||||||||||||
Sbjct: 227296 ccagcccctctcttccctcc 227315

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>gb|AC124349.4| Mus musculus BAC clone RP24-463G19 from chromosome 12, complete
             sequence
          Length = 122944

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 576   tgttggcagttttgtctgcc 595
             ||||||||||||||||||||
Sbjct: 14028 tgttggcagttttgtctgcc 14009

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>gb|AC124439.4| Mus musculus BAC clone RP24-261N14 from chromosome 9, complete
            sequence
          Length = 162530

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  ccagcccctctcttccctcc 176
            ||||||||||||||||||||
Sbjct: 3335 ccagcccctctcttccctcc 3354

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>emb|AL356287.16| Human DNA sequence from clone RP11-57O2 on chromosome 13 Contains a
             High-mobility group (nonhistone chromosomal) protein
             pseudogene, part of a novel gene and the 5' end of the
             SGCG gene for sarcoglycan, gamma (35kD
             dystrophin-associated glycoprotein), complete sequence
          Length = 182118

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   agcccctctcttccctccag 178
             ||||||||||||||||||||
Sbjct: 95500 agcccctctcttccctccag 95519

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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 304     gttctccctgcagatcctcctcat 327
               |||| |||||||||||||||||||
Sbjct: 1054495 gttcgccctgcagatcctcctcat 1054518

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>emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in linkage group 8, complete
             sequence
          Length = 227475

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   tacattttaaagcagccagc 161
             ||||||||||||||||||||
Sbjct: 81136 tacattttaaagcagccagc 81117

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>gb|AC104185.2| Homo sapiens chromosome 3 clone RP11-268J19, complete sequence
          Length = 165918

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   tgaggaatattgaacatcacactg 304
             |||| |||||||||||||||||||
Sbjct: 14860 tgagtaatattgaacatcacactg 14883

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>gb|AC022260.6| Homo sapiens chromosome 8, clone RP11-426C8, complete sequence
          Length = 168515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   agtgcaaaacaaaatctgaa 99
            ||||||||||||||||||||
Sbjct: 4927 agtgcaaaacaaaatctgaa 4908

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>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 294   acatcacactgttctccctgcagatcct 321
             ||||| |||||| |||||||||||||||
Sbjct: 52598 acatctcactgtactccctgcagatcct 52571

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>gb|AC159251.2| Mus musculus BAC clone RP24-113B8 from chromosome 12, complete sequence
          Length = 200896

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 576    tgttggcagttttgtctgcc 595
              ||||||||||||||||||||
Sbjct: 120822 tgttggcagttttgtctgcc 120803

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>gb|AC019252.10| Homo sapiens chromosome 8, clone RP11-390M9, complete sequence
          Length = 137135

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     agtgcaaaacaaaatctgaa 99
              ||||||||||||||||||||
Sbjct: 127337 agtgcaaaacaaaatctgaa 127318

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>gb|AC019144.9| Homo sapiens BAC clone RP11-733L22 from 2, complete sequence
          Length = 146004

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   attgaacatcacactgttct 308
             ||||||||||||||||||||
Sbjct: 83360 attgaacatcacactgttct 83341

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>gb|AC098975.3| Homo sapiens BAC clone RP11-231C6 from 2, complete sequence
          Length = 30336

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   gactgcactggcacaataga 534
             ||||||||||||||||||||
Sbjct: 19290 gactgcactggcacaataga 19309

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>gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192774

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    agcccctctcttccctccag 178
              ||||||||||||||||||||
Sbjct: 137766 agcccctctcttccctccag 137785

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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166966

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    tttcctatatacattttaaa 152
              ||||||||||||||||||||
Sbjct: 161198 tttcctatatacattttaaa 161217

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>dbj|BS000105.1| Pan troglodytes chromosome 22 clone:RP43-117B17, map 22, complete
             sequences
          Length = 164236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   cacattgtgttggcagtttt 588
             ||||||||||||||||||||
Sbjct: 26337 cacattgtgttggcagtttt 26318

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>gb|AC154416.2| Mus musculus BAC clone RP24-232F23 from 17, complete sequence
          Length = 167542

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ctctcatgaggaatattgaa 294
             ||||||||||||||||||||
Sbjct: 65192 ctctcatgaggaatattgaa 65211

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>gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172260

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 294    acatcacactgttctccctgcagatcct 321
              ||||| |||||| |||||||||||||||
Sbjct: 151629 acatctcactgtactccctgcagatcct 151602

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>emb|AJ717885.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT13-4-350, cultivar Bright
           Yellow 2
          Length = 246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 321 tcctcatgaaggcatagaagtaat 344
           |||||||||| |||||||||||||
Sbjct: 123 tcctcatgaatgcatagaagtaat 100

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>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196514

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     aagatgcagagtgcaaaacaaaat 94
              ||||||||||||| ||||||||||
Sbjct: 185913 aagatgcagagtgaaaaacaaaat 185890

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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 569    cacattgtgttggcagtttt 588
              ||||||||||||||||||||
Sbjct: 295573 cacattgtgttggcagtttt 295554

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>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04,
             complete sequence
          Length = 140890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   acattgtgttggcagttttg 589
             ||||||||||||||||||||
Sbjct: 56406 acattgtgttggcagttttg 56425

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>gb|AC133187.3| Mus musculus BAC clone RP23-324O10 from 1, complete sequence
          Length = 219866

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    cccctctcttccctccagag 180
              ||||||||||||||||||||
Sbjct: 119818 cccctctcttccctccagag 119799

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>emb|AL109616.2|HS10L11 Homo sapiens chromosome 21 Cosmid LLNLc116L1110, complete sequence
          Length = 40018

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   cacattgtgttggcagtttt 588
             ||||||||||||||||||||
Sbjct: 15549 cacattgtgttggcagtttt 15568

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>gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome 14, complete sequence
          Length = 195329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tagaagtaatctacagcaat 354
             ||||||||||||||||||||
Sbjct: 70270 tagaagtaatctacagcaat 70251

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>dbj|AP000222.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
            clone:T1850, complete sequence
          Length = 20872

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 569  cacattgtgttggcagtttt 588
            ||||||||||||||||||||
Sbjct: 6124 cacattgtgttggcagtttt 6105

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>dbj|AP000137.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 2/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   cacattgtgttggcagtttt 588
             ||||||||||||||||||||
Sbjct: 55869 cacattgtgttggcagtttt 55850

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>dbj|AP000085.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 2/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   cacattgtgttggcagtttt 588
             ||||||||||||||||||||
Sbjct: 55869 cacattgtgttggcagtttt 55850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,966,517
Number of Sequences: 3902068
Number of extensions: 5966517
Number of successful extensions: 115528
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115341
Number of HSP's gapped (non-prelim): 181
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result