ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMK1_YEAST (P41808) Sporulation-specific mitogen-activated prote... 32 1.9
2SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Se... 30 7.2
3YME7_YEAST (Q04705) Hypothetical 41.4 kDa protein in GAL80-PRP39... 30 9.4

>SMK1_YEAST (P41808) Sporulation-specific mitogen-activated protein kinase SMK1|
           (EC 2.7.11.24) (MAP kinase SMK1)
          Length = 388

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 310 MTKYSCLMKWIVGKCSSSPILDLIPWSPIF 221
           + K+  +  W +GK S++P+   IPWS IF
Sbjct: 274 LIKFGTIKAWNLGKNSNNPVYKKIPWSNIF 303



to top

>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein|
           Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2;
           Selenoprotein Se-P1]
          Length = 385

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 624 NLPSSSLHIHCHHHRLDGEQMQQTIE 701
           +LP S LH H HHH+  G+  Q  +E
Sbjct: 237 SLPPSGLHHHHHHHKHKGQHRQGHLE 262



to top

>YME7_YEAST (Q04705) Hypothetical 41.4 kDa protein in GAL80-PRP39 intergenic|
           region
          Length = 352

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = -3

Query: 646 WRELLGRLFLHHALAPVLMSGSLICLKGVYIWQDVI-------RTVSTNYQSGFS 503
           W   + + FL   ++  L SG ++C   + IW+ VI       + +++NY +G S
Sbjct: 60  WSNNIIQPFLEFRISKWLFSGCILCSSLILIWELVIGLRVYRKKEITSNYMNGIS 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,366,216
Number of Sequences: 219361
Number of extensions: 2203952
Number of successful extensions: 6139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6133
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top