ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27e21 |
|---|---|
| Clone Library Name | barley_pub |
>JAK1_MOUSE (P52332) Tyrosine-protein kinase JAK1 (EC 2.7.10.2) (Janus kinase 1)| (JAK-1) Length = 1153 Score = 33.1 bits (74), Expect = 0.87 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Frame = -1 Query: 634 RRTTSEMVGLHSE--LLQHIKSGGLRKTGGEKSSRFSSE--TTGLAMAFASFKPAGGGQG 467 ++ T+E+ H E L+ I+ G G + R+ E TG +A S KP GG Sbjct: 858 KQPTTEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNH 917 Query: 466 FSDCMLDVSSFRRGEHQ--IAWQACCVDENGRCFSLL 362 +D ++ R H+ + ++ C+++ G L+ Sbjct: 918 IADLKKEIEILRNLYHENIVKYKGICMEDGGNGIKLI 954
>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)| Length = 1191 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Frame = +3 Query: 423 SPRRNEETSSMQSENPCPPPAGLK---DAKAIAKPVVSEEKRELFSPPVFLRPPLFMCCS 593 +P E S S +PCP P K +A + P + + +EL P L P + Sbjct: 131 TPPSEPEASPCPSPSPCPTPKYPKVRLNALLASDPALKPDAKELTLPDSRLLAPPPLVKP 190 Query: 594 SSECSPTISEVVLRISKCLLL 656 ++ P ++E +L+ ++ + L Sbjct: 191 DTQAQPEVAEPLLKPARFMCL 211
>RL23A_RAT (P62752) 60S ribosomal protein L23a| Length = 156 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +3 Query: 456 QSENPCPPPA-----GLKDAKAIAKPVVSEEKRELFSPPVFLRP 572 + E P PP A LK KA+ K V S +K+++ + P F RP Sbjct: 6 KKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRP 49
>RL23A_MOUSE (P62751) 60S ribosomal protein L23a| Length = 156 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +3 Query: 456 QSENPCPPPA-----GLKDAKAIAKPVVSEEKRELFSPPVFLRP 572 + E P PP A LK KA+ K V S +K+++ + P F RP Sbjct: 6 KKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRP 49
>RL23A_HUMAN (P62750) 60S ribosomal protein L23a| Length = 156 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +3 Query: 456 QSENPCPPPA-----GLKDAKAIAKPVVSEEKRELFSPPVFLRP 572 + E P PP A LK KA+ K V S +K+++ + P F RP Sbjct: 6 KKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRP 49
>JAK1_HUMAN (P23458) Tyrosine-protein kinase JAK1 (EC 2.7.10.2) (Janus kinase 1)| (JAK-1) Length = 1142 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Frame = -1 Query: 592 LQHIKSGGLRKTGGEKSSRFSSE-TTGLAMAFASFKPAGGGQGFSDCMLDVSSFRRGEHQ 416 L+ I+ G G + R+ E TG +A S KP GG +D ++ R H+ Sbjct: 864 LKRIRDLGEGHFGKVELCRYDPEDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHE 923 Query: 415 --IAWQACCVDENGRCFSLL 362 + ++ C ++ G L+ Sbjct: 924 NIVKYKGICTEDGGNGIKLI 943
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 30.8 bits (68), Expect = 4.3 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Frame = +3 Query: 171 PDDVKWPQDNS*EPLQSILYGQGH-ALHHGLHIQLLQPTPRPSAEARGAVGRGYWTEKTA 347 PD + P ++ P+QS L+ +G + G PTP P RG Sbjct: 180 PDSIPPPVPSTPRPIQSSLHNRGSPPVPGGPRQPSPGPTPPPFPGNRGT----------- 228 Query: 348 PSFNGSRLKQRPFSSTQHACHAIWCSPRRNEETSSMQSENPCPPPAGLKDAKAIAKPVVS 527 + G ++Q P SS+ + P S + P PPP + + +I + V Sbjct: 229 -ALGGGSIRQSPLSSSSPFSN----RPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVP 283 Query: 528 EEKRELFSPPV 560 + PPV Sbjct: 284 PPPPQNNKPPV 294
>SNX11_HUMAN (Q9Y5W9) Sorting nexin-11| Length = 270 Score = 30.8 bits (68), Expect = 4.3 Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 8/134 (5%) Frame = +3 Query: 213 LQSILYGQGHALHHGLHIQLLQPTPRPSAEARGAVGRGYWTEKTAPSFNGSRLKQRPFSS 392 LQS++ LH L QL P + R + + A S G ++R SS Sbjct: 111 LQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSS 170 Query: 393 ------TQHACHAIWCSPRRNEETSSMQSENPCPPPAGLKDAKAIAKPVVSEEKRELFSP 554 +C + S RR+ +P PPP+ KD + PVV E L SP Sbjct: 171 HLAKGDQPKSCCFLPRSGRRS---------SPSPPPSEEKDHLEVWAPVVDSEVPSLESP 221 Query: 555 PVFLRPPLF--MCC 590 + PPL +CC Sbjct: 222 TL---PPLSSPLCC 232
>YG3F_YEAST (P53283) Hypothetical transport protein YGR138C| Length = 614 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -1 Query: 577 SGGLRKTGGEKSSRFSSETTGLAMAFASFKPAGG 476 S GL GG + F SET G A+AF +F P G Sbjct: 274 SSGLCLVGGSIADMFPSETRGKAIAFFAFAPYVG 307
>CCNK_MOUSE (O88874) Cyclin-K| Length = 554 Score = 30.4 bits (67), Expect = 5.6 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 2/113 (1%) Frame = +3 Query: 225 LYGQGHAL--HHGLHIQLLQPTPRPSAEARGAVGRGYWTEKTAPSFNGSRLKQRPFSSTQ 398 LY QG HH H QL QP PS + V +G ++ PS GS Q P +Q Sbjct: 257 LYSQGKQQMPHHTPH-QLQQP---PSLQPTPQVPQG---PQSQPS-QGSEAAQPPQKDSQ 308 Query: 399 HACHAIWCSPRRNEETSSMQSENPCPPPAGLKDAKAIAKPVVSEEKRELFSPP 557 + + ++ + Q + P P P+ + AK EE + PP Sbjct: 309 QSA--------QQQQQQAQQPKKPSPQPSPPRQAKRAVVVSPKEENKATEPPP 353
>CAN10_RAT (Q9ES66) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 30.4 bits (67), Expect = 5.6 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = +3 Query: 405 CHAIWCSPRRN--EETSSMQSENPCPPPAGLKDAKAIAKPVVSEEKRELFSPPVFLRPPL 578 C A+ PRR +T ++ +P P KD +A+ + EKR++ P V PP+ Sbjct: 378 CVAVLQRPRRRLVGQTRALAGASPAPVNLPGKDYQAVGLHIWKVEKRKISLPRVLSAPPV 437 Query: 579 FMCCSSSECSPTISEVVLR 635 + + C E+ LR Sbjct: 438 ----AGTACHAYDREIHLR 452
>CAN10_MOUSE (Q9ESK3) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral| proteinase 10) (CANP 10) Length = 666 Score = 30.4 bits (67), Expect = 5.6 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = +3 Query: 405 CHAIWCSPRRN--EETSSMQSENPCPPPAGLKDAKAIAKPVVSEEKRELFSPPVFLRPPL 578 C A+ PRR +T ++ +P P KD +A+ + EKR++ P V PP+ Sbjct: 378 CVAVLQRPRRRLVGQTRALAGASPAPVNLPGKDYQAVGLHIWKVEKRKISLPRVLSAPPV 437 Query: 579 FMCCSSSECSPTISEVVLR 635 + + C E+ LR Sbjct: 438 ----AGTACHAYDREIHLR 452
>MEL_APICE (Q8LW54) Melittin precursor| Length = 77 Score = 29.6 bits (65), Expect = 9.6 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = +3 Query: 222 ILYGQGHALH---HGLHIQLLQPTPRPSAEA 305 + YG+ H LH H LH+ +P P P AEA Sbjct: 10 VFYGRVHFLHLCVHFLHLWAPEPEPAPEAEA 40
>TSH3_HUMAN (Q63HK5) Teashirt homolog 3 (Zinc finger protein 537)| Length = 1081 Score = 29.6 bits (65), Expect = 9.6 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +3 Query: 381 PFSSTQHACHAIWCSPRRNEETSS----MQSENPCPPPAGLKDAKAIAKPVVSEEKRELF 548 P +T C + P + E +S Q +P PP G KD +A+PV E +EL Sbjct: 638 PKRATPSPCSSEVGEPIKMEASSDGGFRSQENSPSPPRDGCKDGSPLAEPV--ENGKELV 695 Query: 549 SP 554 P Sbjct: 696 KP 697
>ZCPW1_MOUSE (Q6IR42) Zinc finger CW-type PWWP domain protein 1 homolog| Length = 630 Score = 29.6 bits (65), Expect = 9.6 Identities = 26/107 (24%), Positives = 41/107 (38%) Frame = +3 Query: 285 PRPSAEARGAVGRGYWTEKTAPSFNGSRLKQRPFSSTQHACHAIWCSPRRNEETSSMQSE 464 P+PS+ A G +T PS + LK+ +T+H P R +E + Sbjct: 31 PQPSSWKEDAPGTSSPEAETKPSLLKASLKKEQKPTTEH-------GPNRGQERKLKAQD 83 Query: 465 NPCPPPAGLKDAKAIAKPVVSEEKRELFSPPVFLRPPLFMCCSSSEC 605 P K + + S E E+F + L+ L C +S C Sbjct: 84 QPA-------KKKGKERTLTSAEFEEIFQ--IVLQKSLQECLETSSC 121
>ALBU_RABIT (P49065) Serum albumin precursor| Length = 608 Score = 29.6 bits (65), Expect = 9.6 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +1 Query: 145 IHHIQDAHGLMM*SGHKITVKSLCKAYYMAKDMLYITGYTYSFYNQHPD 291 +H+ + GL + + K +CK Y AKD L++ + Y + +HPD Sbjct: 317 LHNDETPAGLPAVAEEFVEDKDVCKNYEEAKD-LFLGKFLYEYSRRHPD 364
>TSSK2_MOUSE (O54863) Testis-specific serine/threonine-protein kinase 2 (EC| 2.7.11.1) (TSSK-2) (Testis-specific kinase 2) (TSK-2) (Serine/threonine-protein kinase 22B) Length = 357 Score = 29.6 bits (65), Expect = 9.6 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 511 AMAFASFKPAGGGQGFSDCMLDVSSFRRGEHQ 416 AM+ ASFK G G+ +DC LD R EH+ Sbjct: 278 AMSSASFKREGEGKYRADCKLDTRPGSRPEHR 309
>ENGC_VIBCH (Q9KV18) Probable GTPase engC (EC 3.6.1.-)| Length = 387 Score = 29.6 bits (65), Expect = 9.6 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -1 Query: 592 LQHIKSGG--LRKTGGEKSSRFSSETTGLAMAFASFKPAGGGQGFSDC 455 L HI SGG + G + + ET + A+ F+P GG F DC Sbjct: 255 LYHIPSGGDLIDSPGVREFGLWHLETDDVTKAYVEFRPYLGGCKFRDC 302
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 29.6 bits (65), Expect = 9.6 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Frame = +3 Query: 267 QLLQPTPRPSAEARGAVGRGYWTEKTAPSFNGSRLKQRPFSSTQHACHAIWCSP------ 428 Q PTP P A G T PS + S + P S +H + C Sbjct: 961 QASSPTPEPGVGAGDLPGP---TSAPVPSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKA 1017 Query: 429 ---RRNEETSSMQSENP--CPPPAGLKDAKAIAKPVVSEEKRELFSPPV 560 R E+ S E+P C PP + KP+ S+ ++ L PP+ Sbjct: 1018 SRIRAAEKVSRGDQESPDACLPPTVPEAPAPPQKPLNSQSQKHLAPPPL 1066 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,134,285 Number of Sequences: 219361 Number of extensions: 2153487 Number of successful extensions: 6905 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6893 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
