ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27e18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474677.1| Oryza sativa (japonica cultivar-group), predic... 170 4e-39
2gb|BT013105.1| Lycopersicon esculentum clone 114391R, mRNA sequence 66 2e-07
3gb|U66269.1|NTU66269 Nicotiana tabacum ORF mRNA, complete cds 64 7e-07
4gb|U66266.1|NTU66266 Nicotiana tabacum ORF mRNA, complete cds 64 7e-07
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
6dbj|AK073158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
7dbj|AK059279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
8emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 62 3e-06
9gb|DQ222498.1| Solanum tuberosum clone 104F05 mRNA 58 4e-05
10gb|BT016751.1| Zea mays clone Contig584 mRNA sequence 56 2e-04
11ref|XM_470236.1| Oryza sativa (japonica cultivar-group), predic... 54 6e-04
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 6e-04
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
14gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
15gb|AY105812.1| Zea mays PCO140232 mRNA sequence 54 6e-04
16ref|NM_196732.1| Oryza sativa (japonica cultivar-group) putative... 48 0.039
17gb|AY277971.1| Takifugu rubripes transcription factor Sox6a (Sox... 48 0.039
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
19gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) ch... 46 0.15
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
21ref|XM_748575.1| Aspergillus fumigatus Af293 separin (Afu5g09710... 44 0.60
22gb|AC120841.7| Mus musculus chromosome 8, clone RP24-553L18, com... 42 2.4
23ref|XM_745316.1| Aspergillus fumigatus Af293 SURF6 domain nucleo... 42 2.4
24gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosom... 42 2.4
25emb|AL442125.13| Human DNA sequence from clone RP11-230F18 on ch... 42 2.4
26emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 42 2.4
27gb|AC159097.5| Mus musculus chromosome 8, clone RP24-310O9, comp... 42 2.4
28dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
29gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmid... 42 2.4
30dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
31gb|DQ331686.1| Synthetic construct Saccharomyces cerevisiae clon... 42 2.4
32gb|AC103618.6| Mus musculus chromosome 1, clone RP24-202B6, comp... 42 2.4
33emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on ch... 42 2.4
34dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 2.4
35dbj|AP004531.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 2.4
36gb|AC170590.2| Mus musculus chromosome 1, clone wi1-1790N20, com... 42 2.4
37gb|M18097.1|YSCPRB1 Yeast (S.cerevisiae) protease B (PRB1) gene,... 42 2.4
38gb|BT014001.1| Lycopersicon esculentum clone 133050F, mRNA sequence 40 9.4
39gb|AC133498.2| Mus musculus BAC clone RP24-241K8 from chromosome... 40 9.4
40gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosom... 40 9.4
41gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, compl... 40 9.4
42emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on ch... 40 9.4
43emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chr... 40 9.4
44emb|AL646088.23| Mouse DNA sequence from clone RP23-58E13 on chr... 40 9.4
45emb|BX571657.1| Wolinella succinogenes, complete genome; segment... 40 9.4
46emb|AL731800.11| Mouse DNA sequence from clone RP23-358E7 on chr... 40 9.4
47emb|AL732516.6| Mouse DNA sequence from clone RP23-403H17 on chr... 40 9.4
48gb|AF218855.1|AF218855 Mus musculus cytochrome P450 benzphetamin... 40 9.4
49dbj|AK078893.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 9.4
50gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, r... 40 9.4
51gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, comple... 40 9.4
52dbj|BS000099.1| Pan troglodytes chromosome 22 clone:PTB-047E13, ... 40 9.4
53gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 ... 40 9.4
54dbj|AP001692.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.4
55gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 40 9.4
56dbj|AP000146.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 9.4
57emb|AL139074.2|CJ11168X1 Campylobacter jejuni subsp. jejuni NCTC... 40 9.4
58emb|AL683816.6| Mouse DNA sequence from clone RP23-120E8 on chro... 40 9.4
59dbj|AP000231.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 40 9.4 
>ref|XM_474677.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 474

 Score =  170 bits (86), Expect = 4e-39
 Identities = 341/426 (80%)
 Strand = Plus / Minus

                                                                       
Query: 264 tcaggttgtcttggcctttgcggcccttctcttggagtgcctccttgggatggagttctt 323
           |||| ||||||||| |||  ||||||| |||||||| || || || || || ||||||||
Sbjct: 474 tcagtttgtcttggtcttcccggccctcctcttggaatgtcttctaggaatagagttctt 415

                                                                       
Query: 324 cattcccaggaagaagagcagcgcgccgaagagagcgaggttctgtgaaaacatggtgaa 383
           |||||||| |||||| ||||| || || || || || |  |||||||| ||| ||  |||
Sbjct: 414 cattcccaagaagaaaagcagggcaccaaaaagtgccaaattctgtgagaacttgacgaa 355

                                                                       
Query: 384 gagcttaacgaattgctgtgactcgacctcgtagttgtagaagtcgtacacgacaggtgt 443
            |||| ||| |||||    ||||| |  || |||||||||||||||||||| ||||||||
Sbjct: 354 aagctgaacaaattgtgaagactccatttcatagttgtagaagtcgtacacaacaggtgt 295

                                                                       
Query: 444 tatgaatgccaagtaaacaagcagtacgaccgctccaagggagctactgatgaggaaaag 503
           ||| | ||| ||||| |  ||||||| ||  |||||||  ||||| ||||||| ||| ||
Sbjct: 294 tataactgctaagtacaggagcagtaggaatgctccaaatgagctgctgatgatgaacag 235

                                                                       
Query: 504 gagaccaccaaatgctttaaaaaacattgtcaaagcgatgacagtcttgatatcaatgtg 563
            |||||||||||  |||||| |||||| ||   ||| ||||||||||| |||||||| ||
Sbjct: 234 aagaccaccaaagcctttaagaaacatggtagcagcaatgacagtctttatatcaatatg 175

                                                                       
Query: 564 tggcacagccatcccaacgctggcagacgcctgcttcacaaagaggttgaactttggctt 623
           |||||| ||||| || | |||    ||| | |||| |  ||| || ||||| ||||||||
Sbjct: 174 tggcactgccattcctaagctcttggacacttgctgcgtaaatagattgaattttggctt 115

                                                                       
Query: 624 cagagactttgctgctgggcctccatcggtcccaaattcactgaactcttggtaggcgga 683
           ||  | |||||||||||| || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 114 caaggcctttgctgctggtccaccatcagtcccaaattcactaaactcttggtaggcgga 55

                 
Query: 684 gaggag 689
           ||||||
Sbjct: 54  gaggag 49
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>gb|BT013105.1| Lycopersicon esculentum clone 114391R, mRNA sequence
          Length = 933

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 630 ctttgctgctgggcctccatcggtcccaaattcactgaactcttggtaggcggagag 686
           |||||||||||| || ||||| | ||||||||||||||||||||| || ||||||||
Sbjct: 191 ctttgctgctggcccgccatcagacccaaattcactgaactcttgataagcggagag 135
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>gb|U66269.1|NTU66269 Nicotiana tabacum ORF mRNA, complete cds
          Length = 752

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 631 tttgctgctgggcctccatcggtcccaaattcactgaactcttggtaggcggagag 686
           |||||||| || || ||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 189 tttgctgcaggcccgccatctgccccaaattcactgaactcttgataggcggagag 134
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>gb|U66266.1|NTU66266 Nicotiana tabacum ORF mRNA, complete cds
          Length = 737

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 631 tttgctgctgggcctccatcggtcccaaattcactgaactcttggtaggcggagag 686
           |||||||| || || ||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 189 tttgctgcaggcccgccatctgccccaaattcactgaactcttgataggcggagag 134
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                           
Query: 258     ctggcttcaggttgtcttggcctttgcggcccttctcttggagtgcctccttgggatgga 317
               |||| ||||| ||||||||| |||  ||||||| |||||||| || || || || || ||
Sbjct: 5491962 ctggtttcagtttgtcttggtcttcccggccctcctcttggaatgtcttctaggaataga 5492021

                                          
Query: 318     gttcttcattcccaggaagaagagcag 344
               |||||||||||||| |||||| |||||
Sbjct: 5492022 gttcttcattcccaagaagaaaagcag 5492048



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                       
Query: 610     ttgaactttggcttcagagactttgctgctgggcctccatcggtcccaaattcact 665
               ||||| ||||||||||  | |||||||||||| || ||||| ||||||||||||||
Sbjct: 5493129 ttgaattttggcttcaaggcctttgctgctggtccaccatcagtcccaaattcact 5493184



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                               
Query: 415     tagttgtagaagtcgtacacgacaggtgttat 446
               |||||||||||||||||||| |||||||||||
Sbjct: 5492222 tagttgtagaagtcgtacacaacaggtgttat 5492253



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 668     actcttggtaggcggagaggag 689
               ||||||||||||||||||||||
Sbjct: 5494926 actcttggtaggcggagaggag 5494947



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                           
Query: 475     gctccaagggagctactgatgaggaaaaggagaccaccaaatgctttaaaaaacattgtc 534
               |||||||  ||||| ||||||| ||| || |||||||||||  |||||| |||||| || 
Sbjct: 5492910 gctccaaatgagctgctgatgatgaacagaagaccaccaaagcctttaagaaacatggta 5492969

                                
Query: 535     aaagcgatgacagtctt 551
                 ||| |||||||||||
Sbjct: 5492970 gcagcaatgacagtctt 5492986
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>dbj|AK073158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003G06, full
           insert sequence
          Length = 881

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 655 ccaaattcactgaactcttggtaggcggagaggag 689
           ||||||||||| |||||||||||||||||||||||
Sbjct: 163 ccaaattcactaaactcttggtaggcggagaggag 129



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 301 tgcctccttgggatggagttcttcattcccaggaagaagagcagcgcgccgaagagagcg 360
           |||||| | |||||||||||||||||  | ||||||||||| ||||| || |  || |||
Sbjct: 517 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgccccaacaagtgcg 458

                                       
Query: 361 aggttctgtgaaaacatggtgaagagct 388
              ||||||| |||| ||||||||||||
Sbjct: 457 caattctgtgcaaacttggtgaagagct 430
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>dbj|AK059279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C10, full
           insert sequence
          Length = 968

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 655 ccaaattcactgaactcttggtaggcggagaggag 689
           ||||||||||| |||||||||||||||||||||||
Sbjct: 160 ccaaattcactaaactcttggtaggcggagaggag 126



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 301 tgcctccttgggatggagttcttcattcccaggaagaagagcagcgcgccgaagagagcg 360
           |||||| | |||||||||||||||||  | ||||||||||| ||||| || |  || |||
Sbjct: 514 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgccccaacaagtgcg 455

                                       
Query: 361 aggttctgtgaaaacatggtgaagagct 388
              ||||||| |||| ||||||||||||
Sbjct: 454 caattctgtgcaaacttggtgaagagct 427
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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
             complete sequence
          Length = 150283

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                         
Query: 258   ctggcttcaggttgtcttggcctttgcggcccttctcttggagtgcctccttgggatgga 317
             |||| ||||| ||||||||| |||  ||||||| |||||||| || || || || || ||
Sbjct: 46592 ctggtttcagtttgtcttggtcttcccggccctcctcttggaatgtcttctaggaataga 46651

                                        
Query: 318   gttcttcattcccaggaagaagagcag 344
             |||||||||||||| |||||| |||||
Sbjct: 46652 gttcttcattcccaagaagaaaagcag 46678



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 610   ttgaactttggcttcagagactttgctgctgggcctccatcggtcccaaattcact 665
             ||||| ||||||||||  | |||||||||||| || ||||| ||||||||||||||
Sbjct: 47759 ttgaattttggcttcaaggcctttgctgctggtccaccatcagtcccaaattcact 47814



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 415   tagttgtagaagtcgtacacgacaggtgttat 446
             |||||||||||||||||||| |||||||||||
Sbjct: 46852 tagttgtagaagtcgtacacaacaggtgttat 46883



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 668   actcttggtaggcggagaggag 689
             ||||||||||||||||||||||
Sbjct: 49556 actcttggtaggcggagaggag 49577



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 475   gctccaagggagctactgatgaggaaaaggagaccaccaaatgctttaaaaaacattgtc 534
             |||||||  ||||| ||||||| ||| || |||||||||||  |||||| |||||| || 
Sbjct: 47540 gctccaaatgagctgctgatgatgaacagaagaccaccaaagcctttaagaaacatggta 47599

                              
Query: 535   aaagcgatgacagtctt 551
               ||| |||||||||||
Sbjct: 47600 gcagcaatgacagtctt 47616
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>gb|DQ222498.1| Solanum tuberosum clone 104F05 mRNA
          Length = 752

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 634 gctgctgggcctccatcggtcccaaattcactgaactcttggtaggcggagag 686
           |||||||| || ||||| | ||||||||||||||||||||| || ||||||||
Sbjct: 133 gctgctggcccgccatcagacccaaattcactgaactcttgataagcggagag 81
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>gb|BT016751.1| Zea mays clone Contig584 mRNA sequence
          Length = 923

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 610 ttgaactttggcttcagagactttgctgctgggcctccatcggtcccaaattcactgaac 669
           ||||||||||||||||  | ||| ||||| || || || ||  | ||||||||| |||||
Sbjct: 303 ttgaactttggcttcaaggtcttcgctgcaggtccaccgtcatttccaaattcaatgaac 244

                               
Query: 670 tcttggtaggcggagaggag 689
           ||||||||||| ||||||||
Sbjct: 243 tcttggtaggccgagaggag 224



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 91/114 (79%)
 Strand = Plus / Minus

                                                                       
Query: 417 gttgtagaagtcgtacacgacaggtgttatgaatgccaagtaaacaagcagtacgaccgc 476
           |||||||||||| ||||| | ||| ||||| || ||||||||||  ||||| | ||  ||
Sbjct: 496 gttgtagaagtcatacacaataggggttataaacgccaagtaaatgagcaggaggaatgc 437

                                                                 
Query: 477 tccaagggagctactgatgaggaaaaggagaccaccaaatgctttaaaaaacat 530
           |||||  ||||| ||||  | ||| || |||||||||||  |||||| ||||||
Sbjct: 436 tccaaatgagctgctgactatgaacagaagaccaccaaagcctttaagaaacat 383
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>ref|XM_470236.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 474

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 313 atggagttcttcattcccaggaagaagagcagcgcgccgaagagagc 359
           |||||||||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 425 atggagttcttcatgcccaggaagaaaagaagcgccccaaagagagc 379



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 655 ccaaattcactgaactcttggtaggcggagaggag 689
           ||||||||||| ||||| |||||||||||||||||
Sbjct: 83  ccaaattcactaaactcctggtaggcggagaggag 49



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 412 tcgtagttgtagaagtcgtacacgacaggtgt 443
           |||||||||||||||||||| || ||||||||
Sbjct: 326 tcgtagttgtagaagtcgtagacaacaggtgt 295
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 313     atggagttcttcattcccaggaagaagagcagcgcgccgaagagagc 359
               |||||||||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 2721606 atggagttcttcatgcccaggaagaaaagaagcgccccaaagagagc 2721652



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 412     tcgtagttgtagaagtcgtacacgacaggtgt 443
               |||||||||||||||||||| || ||||||||
Sbjct: 2721789 tcgtagttgtagaagtcgtagacaacaggtgt 2721820
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 313     atggagttcttcattcccaggaagaagagcagcgcgccgaagagagc 359
               |||||||||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 2721716 atggagttcttcatgcccaggaagaaaagaagcgccccaaagagagc 2721762



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 412     tcgtagttgtagaagtcgtacacgacaggtgt 443
               |||||||||||||||||||| || ||||||||
Sbjct: 2721899 tcgtagttgtagaagtcgtagacaacaggtgt 2721930
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>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050N02, complete sequence
          Length = 133373

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 313   atggagttcttcattcccaggaagaagagcagcgcgccgaagagagc 359
             |||||||||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 66525 atggagttcttcatgcccaggaagaaaagaagcgccccaaagagagc 66571



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 412   tcgtagttgtagaagtcgtacacgacaggtgt 443
             |||||||||||||||||||| || ||||||||
Sbjct: 66708 tcgtagttgtagaagtcgtagacaacaggtgt 66739
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>gb|AY105812.1| Zea mays PCO140232 mRNA sequence
          Length = 1079

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 310 gggatggagttcttcattcccaggaagaagagcag 344
           ||||||||||||||||| ||||| |||||||||||
Sbjct: 573 gggatggagttcttcatgcccagaaagaagagcag 539



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 658 aattcactgaactcttggtaggcggagaggag 689
           |||||| | ||||| |||||||||||||||||
Sbjct: 225 aattcattaaactcctggtaggcggagaggag 194
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>ref|NM_196732.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
           (OSJNBa0094K20.7), mRNA
          Length = 648

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 301 tgcctccttgggatggagttcttcattcccaggaagaagagcagcgcgccgaagagagcg 360
           |||||| | |||||||||||||||||  | ||||||||||| ||||| || |  || |||
Sbjct: 608 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgccccaacaagtgcg 549

                                       
Query: 361 aggttctgtgaaaacatggtgaagagct 388
              ||||||| |||| ||||||||||||
Sbjct: 548 caattctgtgcaaacttggtgaagagct 521



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 668 actcttggtaggcggagaggag 689
           ||||||||||||||||||||||
Sbjct: 70  actcttggtaggcggagaggag 49
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>gb|AY277971.1| Takifugu rubripes transcription factor Sox6a (Sox6a) gene, complete cds
          Length = 66784

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 128   aatcctgcaggcccccagctcaca 151
             ||||||||||||||||||||||||
Sbjct: 40091 aatcctgcaggcccccagctcaca 40114
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 301      tgcctccttgggatggagttcttcattcccaggaagaagagcagcgc 347
                |||||| | |||||||||||||||||  | ||||||||||| |||||
Sbjct: 15582218 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgc 15582172



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 668      actcttggtaggcggagaggag 689
                ||||||||||||||||||||||
Sbjct: 15578676 actcttggtaggcggagaggag 15578655
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>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20,
             complete sequence
          Length = 193119

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 301   tgcctccttgggatggagttcttcattcccaggaagaagagcagcgc 347
             |||||| | |||||||||||||||||  | ||||||||||| |||||
Sbjct: 69584 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgc 69538



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 668   actcttggtaggcggagaggag 689
             ||||||||||||||||||||||
Sbjct: 66042 actcttggtaggcggagaggag 66021
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 301      tgcctccttgggatggagttcttcattcccaggaagaagagcagcgc 347
                |||||| | |||||||||||||||||  | ||||||||||| |||||
Sbjct: 15590459 tgcctcttagggatggagttcttcatggcaaggaagaagaggagcgc 15590413



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 668      actcttggtaggcggagaggag 689
                ||||||||||||||||||||||
Sbjct: 15586917 actcttggtaggcggagaggag 15586896
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>ref|XM_748575.1| Aspergillus fumigatus Af293 separin (Afu5g09710) partial mRNA
          Length = 6363

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 486  gctactgatgaggaaaaggaga 507
            ||||||||||||||||||||||
Sbjct: 1690 gctactgatgaggaaaaggaga 1711
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>gb|AC120841.7| Mus musculus chromosome 8, clone RP24-553L18, complete sequence
          Length = 143963

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   ctgtgaaaacatggtgaagag 386
             |||||||||||||||||||||
Sbjct: 83098 ctgtgaaaacatggtgaagag 83118
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>ref|XM_745316.1| Aspergillus fumigatus Af293 SURF6 domain nucleolar protein
            (Afu1g06600) partial mRNA
          Length = 1587

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 331  aggaagaagagcagcgcgccgaaga 355
            |||||||||||||||||||| ||||
Sbjct: 986  aggaagaagagcagcgcgccaaaga 1010
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>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence
          Length = 234158

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 366    ctgtgaaaacatggtgaagag 386
              |||||||||||||||||||||
Sbjct: 218298 ctgtgaaaacatggtgaagag 218278
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>emb|AL442125.13| Human DNA sequence from clone RP11-230F18 on chromosome 13 Contains the
             5' end of the gene for FLJ10704 (FLJ20092), a  novel gene,
             a novel gene (FLJ20623), the TFDP1 gene for transcription
             factor Dp-1 (DP-1, DRTF1) and 5 CpG islands, complete
             sequence
          Length = 184889

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   gtgaaaacatggtgaagagct 388
             |||||||||||||||||||||
Sbjct: 90774 gtgaaaacatggtgaagagct 90794
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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   gagtgcctccttgggatggag 318
             |||||||||||||||||||||
Sbjct: 47729 gagtgcctccttgggatggag 47709
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>gb|AC159097.5| Mus musculus chromosome 8, clone RP24-310O9, complete sequence
          Length = 179528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    ctgtgaaaacatggtgaagag 386
              |||||||||||||||||||||
Sbjct: 172675 ctgtgaaaacatggtgaagag 172695
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 495      gaggaaaaggagaccaccaaa 515
                |||||||||||||||||||||
Sbjct: 31684294 gaggaaaaggagaccaccaaa 31684314
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>gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmids 9669, 8334, 8199, and
             lambda clone 1160
          Length = 50849

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 269   ttgtcttggcctttgcggcccttct 293
             ||||||||||| |||||||||||||
Sbjct: 39244 ttgtcttggcccttgcggcccttct 39268
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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 495   gaggaaaaggagaccaccaaa 515
             |||||||||||||||||||||
Sbjct: 64081 gaggaaaaggagaccaccaaa 64101
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>gb|DQ331686.1| Synthetic construct Saccharomyces cerevisiae clone FLH202326.01X
           PRB1 gene, complete sequence
          Length = 1908

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 269 ttgtcttggcctttgcggcccttct 293
           ||||||||||| |||||||||||||
Sbjct: 233 ttgtcttggcccttgcggcccttct 209
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>gb|AC103618.6| Mus musculus chromosome 1, clone RP24-202B6, complete sequence
          Length = 141016

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     atggagacaagcagttttctg 30
              |||||||||||||||||||||
Sbjct: 139299 atggagacaagcagttttctg 139279
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>emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on chromosome 2, complete
             sequence
          Length = 178468

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 323   tcattcccaggaagaagagca 343
             |||||||||||||||||||||
Sbjct: 49483 tcattcccaggaagaagagca 49503
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>dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16G15, TM0073,
             complete sequence
          Length = 90077

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   ggatggagttcttcattccca 331
             |||||||||||||||||||||
Sbjct: 50680 ggatggagttcttcattccca 50660
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>dbj|AP004531.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13M14, TM0059,
            complete sequence
          Length = 94884

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 311  ggatggagttcttcattccca 331
            |||||||||||||||||||||
Sbjct: 3462 ggatggagttcttcattccca 3442
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>gb|AC170590.2| Mus musculus chromosome 1, clone wi1-1790N20, complete sequence
          Length = 38277

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 10   atggagacaagcagttttctg 30
            |||||||||||||||||||||
Sbjct: 3120 atggagacaagcagttttctg 3100
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>gb|M18097.1|YSCPRB1 Yeast (S.cerevisiae) protease B (PRB1) gene, complete cds
          Length = 4662

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 269  ttgtcttggcctttgcggcccttct 293
            ||||||||||| |||||||||||||
Sbjct: 2176 ttgtcttggcccttgcggcccttct 2152
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>gb|BT014001.1| Lycopersicon esculentum clone 133050F, mRNA sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tcgtagttgtagaagtcgta 431
           ||||||||||||||||||||
Sbjct: 404 tcgtagttgtagaagtcgta 385
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>gb|AC133498.2| Mus musculus BAC clone RP24-241K8 from chromosome 13, complete sequence
          Length = 159112

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    ttcaggttgtcttggccttt 282
              ||||||||||||||||||||
Sbjct: 119189 ttcaggttgtcttggccttt 119208
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>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete sequence
          Length = 216044

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     ttctgtagcaaaacacagga 45
              ||||||||||||||||||||
Sbjct: 112606 ttctgtagcaaaacacagga 112587
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>gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, complete sequence
          Length = 151295

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   gcctgcttcacaaagaggtt 611
             ||||||||||||||||||||
Sbjct: 88171 gcctgcttcacaaagaggtt 88152
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>emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on chromosome Xq12-13.3
             Contains a eukaryotic translation termination factor 1
             (ETF1) pseudogene, a cyclin fold protein 1 (CFP1)
             pseudogene and a CpG island, complete sequence
          Length = 159093

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   gcctccttgggatggagttc 321
             ||||||||||||||||||||
Sbjct: 27750 gcctccttgggatggagttc 27769
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>emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the
              3' end of a novel gene (KIAA1128, FLJ14262, FLJ25809) , the
              5' end of a Siah-interacting protein (SIP) (calcyclin
              binding protein) pseudogene, ribosomal protein S3A
              pseudogene 5 (RPS3AP5) and two CpG islands, complete
              sequence
          Length = 150151

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    gctttaaaaaacattgtcaa 536
              ||||||||||||||||||||
Sbjct: 122088 gctttaaaaaacattgtcaa 122107
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>emb|AL646088.23| Mouse DNA sequence from clone RP23-58E13 on chromosome 11 Contains the
              genes for three novel proteins (MOR256-22,  MOR256-23 and
              MOR256-26), five genes for novel proteins similar to the
              olfactory receptor family MOR256, a ribosomal protein S28
              (Rps28) pseudogene, the Flt4 gene for FMS-like tyrosine
              kinase 4 and two CpG islands, complete sequence
          Length = 211330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    atcccttgcctggcttcagg 268
              ||||||||||||||||||||
Sbjct: 166771 atcccttgcctggcttcagg 166752
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>emb|BX571657.1| Wolinella succinogenes, complete genome; segment 1/7
          Length = 347961

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    tctcttggagtgcctccttg 310
              ||||||||||||||||||||
Sbjct: 324301 tctcttggagtgcctccttg 324282
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>emb|AL731800.11| Mouse DNA sequence from clone RP23-358E7 on chromosome 11 Contains the
              gene for a novel protein, complete sequence
          Length = 204888

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    agtgcctccttgggatggag 318
              ||||||||||||||||||||
Sbjct: 204864 agtgcctccttgggatggag 204845
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>emb|AL732516.6| Mouse DNA sequence from clone RP23-403H17 on chromosome 11 Contains a
            novel gene, complete sequence
          Length = 99659

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  agtgcctccttgggatggag 318
            ||||||||||||||||||||
Sbjct: 1976 agtgcctccttgggatggag 1957
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>gb|AF218855.1|AF218855 Mus musculus cytochrome P450 benzphetamine N-demethylase (Cyp2j6)
           gene sequence
          Length = 12499

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 atagtttcccctccctccta 243
           ||||||||||||||||||||
Sbjct: 390 atagtttcccctccctccta 371
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>dbj|AK078893.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130001H23 product:cytochrome P450, 2j6,
            full insert sequence
          Length = 3515

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  atagtttcccctccctccta 243
            ||||||||||||||||||||
Sbjct: 3359 atagtttcccctccctccta 3340
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>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone
              BACR02C19, complete sequence
          Length = 188359

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    caggaagaagagcagcgcgc 349
              ||||||||||||||||||||
Sbjct: 115521 caggaagaagagcagcgcgc 115540
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>gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, complete sequence
          Length = 174225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   ctttaaaaaacattgtcaaa 537
             ||||||||||||||||||||
Sbjct: 10932 ctttaaaaaacattgtcaaa 10951
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>dbj|BS000099.1| Pan troglodytes chromosome 22 clone:PTB-047E13, map 22, complete
              sequences
          Length = 231583

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 621    cttcagagactttgctgctg 640
              ||||||||||||||||||||
Sbjct: 105726 cttcagagactttgctgctg 105745
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>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete
              sequence
          Length = 273418

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    caggaagaagagcagcgcgc 349
              ||||||||||||||||||||
Sbjct: 202422 caggaagaagagcagcgcgc 202441
to top
>dbj|AP001692.1| Homo sapiens genomic DNA, chromosome 21q, section 36/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   cttcagagactttgctgctg 640
             ||||||||||||||||||||
Sbjct: 36962 cttcagagactttgctgctg 36981
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>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    cattcccaggaagaagagca 343
              ||||||||||||||||||||
Sbjct: 121354 cattcccaggaagaagagca 121373
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>dbj|AP000146.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T145, complete
             sequence
          Length = 77728

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   cttcagagactttgctgctg 640
             ||||||||||||||||||||
Sbjct: 43522 cttcagagactttgctgctg 43541
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>emb|AL139074.2|CJ11168X1 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              1/6
          Length = 314150

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    ccaccaaatgctttaaaaaa 527
              ||||||||||||||||||||
Sbjct: 277703 ccaccaaatgctttaaaaaa 277684
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>emb|AL683816.6| Mouse DNA sequence from clone RP23-120E8 on chromosome 4, complete
            sequence
          Length = 216639

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  atagtttcccctccctccta 243
            ||||||||||||||||||||
Sbjct: 7302 atagtttcccctccctccta 7321
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>dbj|AP000231.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
             clone:T145, complete sequence
          Length = 77728

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 621   cttcagagactttgctgctg 640
             ||||||||||||||||||||
Sbjct: 34207 cttcagagactttgctgctg 34188


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,759,765
Number of Sequences: 3902068
Number of extensions: 6759765
Number of successful extensions: 125068
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124734
Number of HSP's gapped (non-prelim): 332
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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