ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27e17 |
|---|---|
| Clone Library Name | barley_pub |
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 167 bits (423), Expect = 3e-41 Identities = 78/90 (86%), Positives = 87/90 (96%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPK+GKG Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 167 bits (423), Expect = 3e-41 Identities = 78/90 (86%), Positives = 87/90 (96%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPK+GKG Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 167 bits (422), Expect = 4e-41 Identities = 78/90 (86%), Positives = 86/90 (95%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE+P+TGKG Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 157 bits (397), Expect = 3e-38 Identities = 75/90 (83%), Positives = 83/90 (92%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 F+ GPLS+L SVKNN QVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPKTGKG Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>SMD2_SCHPO (O14036) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 115 Score = 130 bits (326), Expect = 5e-30 Identities = 63/90 (70%), Positives = 74/90 (82%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 FS GPLS+L +VKN+ QVLINCRNNKKLL R++AFDRH NMVLENV+EMWTE +T G Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG 84 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KK +NKDRFISKMFLRGD V++V+R P Sbjct: 85 -KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 110 Score = 102 bits (255), Expect = 9e-22 Identities = 49/90 (54%), Positives = 67/90 (74%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339 F GP+SL+ ++ T V+I+ RNN K++ R++AFDRHCNMVLENV+E+WTE Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 78 Query: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 249 KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 79 KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 50.1 bits (118), Expect = 7e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 73 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 K R I +F+RGD V++V Sbjct: 74 YKSTK-RNIPMLFVRGDGVVLV 94
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 50.1 bits (118), Expect = 7e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 73 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 K R I +F+RGD V++V Sbjct: 74 YKSTK-RNIPMLFVRGDGVVLV 94
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/82 (35%), Positives = 47/82 (57%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL L+ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 L + + +F+RGDSVI++ Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 40.4 bits (93), Expect = 0.006 Identities = 24/82 (29%), Positives = 44/82 (53%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL LL +++ + +V I R + L+G ++AFD HCN+VL + E ++ + Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE--- 58 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 +R +F+RGD+V ++ Sbjct: 59 ----SERRCEMVFIRGDTVTLI 76
>SMD2_PIG (Q29329) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) (Fragment) Length = 50 Score = 40.0 bits (92), Expect = 0.007 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = -1 Query: 518 FSTGPLSLLMMSVKNNTQVLINCRNNK 438 F+TGPLS+ S K TQVLINCRN K Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>LP61_EIMTE (P15714) Antigen LPMC-61 (Fragment)| Length = 255 Score = 38.1 bits (87), Expect = 0.028 Identities = 23/82 (28%), Positives = 38/82 (46%) Frame = -3 Query: 516 QHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQ 337 Q + P E+Q+Q Q PEQQ+ WS ++ Q ++ + W +Q Sbjct: 148 QQQQQWPEQPEQQQQQ----QWPEQQQQQWSDQNQQQQAQQWQAQQ-------QQQWPQQ 196 Query: 336 EEGPSSEQGQVHQQDVPPRRLG 271 ++ P +Q Q QQD+ P +G Sbjct: 197 QQQPQQQQQQQQQQDLGPDGVG 218
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein| Length = 83 Score = 34.7 bits (78), Expect = 0.31 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = -1 Query: 515 STGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGK 336 +T P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 57 Query: 335 KKALPVNKDRFISKMFLRGDSVIIV 261 K + ++ +RGD+VI V Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 33.9 bits (76), Expect = 0.53 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 33.9 bits (76), Expect = 0.53 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>NU2M_VARBN (Q94VJ5) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 345 Score = 33.5 bits (75), Expect = 0.69 Identities = 30/93 (32%), Positives = 47/93 (50%) Frame = +1 Query: 202 ETLLGHTRCRHRLNHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLT 381 +T L T + HLG++ TMMT +P N+ L+NL L ++P+ T + + LT Sbjct: 172 QTQLRKTMAFSSIAHLGWMITMMTIAP--NLTLLNLIL------YIPMTSL-TMLIMHLT 222 Query: 382 FSRTMLQ*RSNALMRPSSFLLFRQLISTWVLFL 480 S+T+ NA++ PS L L +L L Sbjct: 223 MSKTL----QNAMLIPSHSLTATSLFLLSLLSL 251
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 33.5 bits (75), Expect = 0.69 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = -1 Query: 473 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 297 N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R + Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68 Query: 296 KMFLRGDSVI 267 + LRG++++ Sbjct: 69 FVLLRGENIV 78
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein| Length = 83 Score = 33.1 bits (74), Expect = 0.90 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ K Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEII-------NGENKG 60 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 + ++ +RGD+VI V Sbjct: 61 V-------YDRVLVRGDNVIFV 75
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 33.1 bits (74), Expect = 0.90 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 +N + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60 Query: 269 I 267 + Sbjct: 61 V 61
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 8/82 (9%) Frame = -1 Query: 488 MSVKNNTQVL--INCR------NNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKK 333 M+V ++++L I+CR + + +G +AFD+H N++L + E PK K + Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60 Query: 332 KALPVNKDRFISKMFLRGDSVI 267 + + R + + LRG++++ Sbjct: 61 R----EEKRVLGLVLLRGENLV 78
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 81 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = -1 Query: 467 QVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 288 Q+ IN + N+ ++G +R FD+ N+V++N E + N+ I + Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVE---------------VNGNEKNDIGMVV 61 Query: 287 LRGDSVIIV 261 +RG+SV+ V Sbjct: 62 IRGNSVVTV 70
>CMGA_HORSE (Q9XS63) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| WE-14] Length = 448 Score = 32.3 bits (72), Expect = 1.5 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Frame = -3 Query: 567 ADGGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLP-EQQEATWSHESI*-PSLQH 394 A+ S + EE G P A + QE Q P E++EA +H PS +H Sbjct: 129 AEARGDSKEVEENGEDADGARPQAALEPEQESRVEDAQAPGEEKEAINTHSPTRLPSQKH 188 Query: 393 GSRER*GDVD*GSKDWQRQEEGPSSEQGQVHQQDVPPRRLGHHCSKEPQ 247 + GD D S+ +E+G +E+GQ +++ G E + Sbjct: 189 PDPQAEGDSDSPSQGLVDREKGLGAERGQQAKREEEEDEAGEKADAEEE 237
>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated| protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 160 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = -1 Query: 473 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGK---GKKKALPVNKDRF 303 N ++ I ++ + +G +AFD+H N++L E PK GK G++K R Sbjct: 14 NYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RI 66 Query: 302 ISKMFLRGDSVI 267 + + +RG+ ++ Sbjct: 67 LGLVLVRGEHIV 78
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 31.6 bits (70), Expect = 2.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 31.6 bits (70), Expect = 2.6 Identities = 19/82 (23%), Positives = 43/82 (52%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL L S+ N+ V+I + +++ G +++FD H N+VL + E+ + G+ ++ Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR- 65 Query: 326 LPVNKDRFISKMFLRGDSVIIV 261 + + +RGD+++ + Sbjct: 66 --------LGTVLIRGDNIVYI 79
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 31.6 bits (70), Expect = 2.6 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Frame = -3 Query: 561 GGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*P-SLQHGSR 385 GG SS E G VQ PA + E +L E+ EA S P S G Sbjct: 587 GGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQG-ELKEEAEAPMEDTSQPPPSEPKGDA 645 Query: 384 ER*GDVD*GSKDWQRQEEGPSSEQGQVHQQDVPP 283 R G+ + + E +E+GQ + VPP Sbjct: 646 AREGETPDEKESGDKSEAQKPNEKGQAGPEGVPP 679
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 270 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 269 I 267 + Sbjct: 78 V 78
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 196 Score = 31.2 bits (69), Expect = 3.4 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Frame = -1 Query: 449 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD----------RFI 300 ++ + +G++ AFD+H N+VL E VPKT K + +KD R + Sbjct: 25 QDGRVYIGQLMAFDKHMNLVLNECIE--ERVPKTQLDKLRPRKDSKDGTTLNIKVEKRVL 82 Query: 299 SKMFLRGDSVI 267 LRG+ ++ Sbjct: 83 GLTILRGEQIL 93
>SYL_WOLSU (Q7M926) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 531 GGGGVQHRAPVPAHDERQEQYPGTYQLPEQQ 439 G G V VPAHDER ++ YQLP++Q Sbjct: 339 GSGAVM---AVPAHDERDFEFAKKYQLPQKQ 366
>HXA1_RAT (O08656) Homeobox protein Hox-A1| Length = 333 Score = 31.2 bits (69), Expect = 3.4 Identities = 21/68 (30%), Positives = 27/68 (39%) Frame = -3 Query: 606 GLFPFRRSPASIRADGGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATW 427 G+ F+ S + GG GG GVQ +P H P TYQ ++ Sbjct: 33 GITTFQSCAVSANSCGGDDRFL---GGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSY 89 Query: 426 SHESI*PS 403 SH S PS Sbjct: 90 SHSSCGPS 97
>LSM5_YEAST (P40089) U6 snRNA-associated Sm-like protein LSm5| Length = 93 Score = 30.8 bits (68), Expect = 4.5 Identities = 22/87 (25%), Positives = 45/87 (51%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 327 PL ++ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64 Query: 326 LPVNKDRFISKMFLRGDSVIIVLRNPK 246 + + +M L G+++ I++ K Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGK 86
>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor| Length = 183 Score = 30.4 bits (67), Expect = 5.8 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -3 Query: 492 HDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQEEGPSSEQ 313 H + + PG Q P QQE + P Q G ++ G +EGP ++ Sbjct: 77 HQKPRPPKPGNQQGPPQQEGQQQNRPPKPGNQEGPPQQEGQQQ-NRPPKPGNQEGPPQQE 135 Query: 312 GQVHQQDVPPR 280 GQ QQ+ PP+ Sbjct: 136 GQ--QQNRPPK 144
>MTCU_CALSI (Q9U620) Copper-specific metallothionein-2 (CuMT-II)| Length = 64 Score = 30.4 bits (67), Expect = 5.8 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +2 Query: 296 C**TCPCSLEGPSSCLCQSLEPQSTSP*RSREPC-CNDGQMLS-CDQVASCCSGS 454 C +C C G C C S +T P S++ C CNDG S C SCC G+ Sbjct: 5 CGTSCKC---GSGKCCCGSTCNCTTCP--SKQSCSCNDGACGSACQCKTSCCCGA 54
>RUXE_DROME (Q9VLV5) Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm| protein E) (Sm-E) (SmE) Length = 94 Score = 30.0 bits (66), Expect = 7.6 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = -1 Query: 506 PLSLLMMSVKNNTQVLINCRNNKKLL--GRMRAFDRHCNMVLENVREMWTEVPKTGKGKK 333 P++L+ ++N ++V + N L G + FD + N+VL++ E++ + Sbjct: 16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVK--------- 66 Query: 332 KALPVNKDRFISKMFLRGDSVIIV 261 + R + ++ L+GD++ ++ Sbjct: 67 ----TRQRRNLGRIMLKGDNITLI 86
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 7.6 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -1 Query: 515 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 372 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 7.6 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -1 Query: 515 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 372 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = -1 Query: 467 QVLINCRNNKKLLGRMRAFDRHCNMVLE 384 +V++ R+ KKL+G +R+FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50
>SYL_CHRVO (Q7P0R1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 872 Score = 29.6 bits (65), Expect = 10.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 501 VPAHDERQEQYPGTYQLPEQQ 439 VPAHDER ++ YQLP +Q Sbjct: 342 VPAHDERDFEFANKYQLPIKQ 362
>LIN13_CAEEL (Q11107) Zinc finger protein lin-13 (Abnormal cell lineage protein| 13) Length = 2248 Score = 29.6 bits (65), Expect = 10.0 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +3 Query: 357 NLSPHLPNVLENHVAMTVKC 416 N +P+ NVL NHVA+T KC Sbjct: 1910 NSAPNNTNVLRNHVAVTTKC 1929
>RUTB_ECOLI (P75897) Putative isochorismatase family protein rutB (EC 3.-.-.-)| (Pyrimidine utilization protein B) Length = 230 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 721 SPAGSLPVLDEGAATVRPVTPGSCCAGIAKRELGLLLIWF 602 +P G L + +T RPV A A R G+L+IWF Sbjct: 31 TPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWF 70
>RUTB_ECO57 (Q8XAU3) Putative isochorismatase family protein rutB (EC 3.-.-.-)| (Pyrimidine utilization protein B) Length = 230 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 721 SPAGSLPVLDEGAATVRPVTPGSCCAGIAKRELGLLLIWF 602 +P G L + +T RPV A A R G+L+IWF Sbjct: 31 TPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWF 70
>SYL_FUSNN (Q8RIQ3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 859 Score = 29.6 bits (65), Expect = 10.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 501 VPAHDERQEQYPGTYQLPEQQEAT 430 VPAHDER + G Y LP +Q T Sbjct: 340 VPAHDERDFVFAGKYNLPVKQVIT 363
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 29.6 bits (65), Expect = 10.0 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = -3 Query: 519 VQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQR 340 VQ + P +H + +Q QL Q SH ++ QH ++ + K+ QR Sbjct: 1842 VQVQIPQQSHQQILQQQQQQSQLSLSQ----SHSALLQPSQHPEKKNKVVIKEKDKESQR 1897 Query: 339 QEEGPSSEQGQVHQQDVPP 283 + EGP +G Q+ P Sbjct: 1898 EREGPEGAEGNTGPQESLP 1916 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,379,498 Number of Sequences: 219361 Number of extensions: 2322104 Number of successful extensions: 6929 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 6476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6909 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
