ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26p09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPOU_DROME (P24350) Inhibitory POU protein (I-POU) (Abnormal che... 35 0.15
2PRLR_RAT (P05710) Prolactin receptor precursor (PRL-R) (Lactogen... 31 3.6
3CHIA_LYCES (Q05539) Acidic 26 kDa endochitinase precursor (EC 3.... 30 6.1
4FES_ECOLI (P13039) Enterochelin esterase (Ferric enterobactin es... 30 8.0

>IPOU_DROME (P24350) Inhibitory POU protein (I-POU) (Abnormal chemosensory jump|
           6 protein)
          Length = 396

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 116 SLHRWNHLCRHHHPGFLGKRLGSSHRRLLQ*RTRIHHP 229
           S H  NH+  HHHPG L    G  H       + +HHP
Sbjct: 176 SYHSMNHMMSHHHPGTLSGHTGGHHG-----HSAVHHP 208



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>PRLR_RAT (P05710) Prolactin receptor precursor (PRL-R) (Lactogen receptor)|
          Length = 610

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -3

Query: 424 PLFNATFGYKTGNNTRRRHLIQYRQTT*T*LMTGWWIDPHYSRDQPSSQTGWRLVNHSTG 245
           P  N T   K   + +    +++   T T + TGW+   +  R +P     W +  H TG
Sbjct: 124 PPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEI--HFTG 181

Query: 244 HHQQARVMNSSPSLK 200
           H  Q +V +  P  K
Sbjct: 182 HQTQFKVFDLYPGQK 196



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>CHIA_LYCES (Q05539) Acidic 26 kDa endochitinase precursor (EC 3.2.1.14)|
          Length = 253

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 196 TPSMKDSNSSPGPADGVQLNG*LISIQFGCSVGPENSAD 312
           TPS KD+ ++  P  GV  N  +I+ QF C +GP  +A+
Sbjct: 185 TPSPKDTAANRVPGYGVITN--IINGQFECGMGPNTAAE 221



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>FES_ECOLI (P13039) Enterochelin esterase (Ferric enterobactin esterase)|
          Length = 374

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 331 MTGWWIDPHYSRDQPSSQTGWRLVNHSTGHHQQAR 227
           +T WW DP  S +  + +  W  +   T HHQ ++
Sbjct: 4   VTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQ 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,905,006
Number of Sequences: 219361
Number of extensions: 1833655
Number of successful extensions: 4271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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