ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27e16 |
|---|---|
| Clone Library Name | barley_pub |
>RS4_MAIZE (O22424) 40S ribosomal protein S4| Length = 265 Score = 89.7 bits (221), Expect = 9e-18 Identities = 41/46 (89%), Positives = 44/46 (95%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKRD 186 ED+ GHQFATR+GNVFTIGKG KPWVSLPKGKGIKL+IIEEQRKRD Sbjct: 211 EDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRD 256
>RS4_SOLTU (P46300) 40S ribosomal protein S4| Length = 264 Score = 87.8 bits (216), Expect = 3e-17 Identities = 39/45 (86%), Positives = 44/45 (97%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+QGH+FATRLGNVFT+GKGTKPWVSLPKGKGIKLTIIE+ RKR Sbjct: 211 QDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
>RS4_PRUAR (O81363) 40S ribosomal protein S4| Length = 261 Score = 86.7 bits (213), Expect = 7e-17 Identities = 39/45 (86%), Positives = 43/45 (95%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA GH+FATRLGNVFTIGKGTKPWVSLPKGKGIKLTI+EE +KR Sbjct: 207 QDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
>RS4_ARATH (P49204) 40S ribosomal protein S4| Length = 262 Score = 86.3 bits (212), Expect = 9e-17 Identities = 39/45 (86%), Positives = 43/45 (95%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+ GH+FATRLGNV+TIGKGTKPWVSLPKGKGIKLTIIEE RKR Sbjct: 211 QDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
>RS4_GOSHI (P46299) 40S ribosomal protein S4| Length = 262 Score = 84.0 bits (206), Expect = 5e-16 Identities = 39/45 (86%), Positives = 42/45 (93%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA GH+FATRLGNVFTIGKGTKPWVSLPK KGIKL+IIEE RKR Sbjct: 211 QDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)| Length = 268 Score = 79.7 bits (195), Expect = 9e-15 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIE 204 EDA GHQFATRLGNVFTIGKG KPWVSLPKGKGIKL+IIE Sbjct: 214 EDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253
>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_XENLA (P49401) 40S ribosomal protein S4| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_CRIGR (P47961) 40S ribosomal protein S4| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_CHICK (P47836) 40S ribosomal protein S4| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant| mRNA protein) (SCR10) Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform| Length = 262 Score = 72.0 bits (175), Expect = 2e-12 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_DROME (P41042) 40S ribosomal protein S4| Length = 261 Score = 70.9 bits (172), Expect = 4e-12 Identities = 32/45 (71%), Positives = 39/45 (86%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+QGH FATRL NVF IGKG KP++SLPKGKG+KL+I EE+ KR Sbjct: 211 KDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 69.7 bits (169), Expect = 9e-12 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+ EE+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 254
>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform| Length = 262 Score = 69.7 bits (169), Expect = 9e-12 Identities = 30/45 (66%), Positives = 38/45 (84%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+ G+ FATRL N+F IGKG KPWVSLP+GKG++LTI EE+ KR Sbjct: 210 KDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 254
>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2| Length = 262 Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2| Length = 262 Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 210 KDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 68.9 bits (167), Expect = 2e-11 Identities = 28/45 (62%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LT+ EE+ KR Sbjct: 210 KDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 254
>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 67.4 bits (163), Expect = 5e-11 Identities = 28/45 (62%), Positives = 36/45 (80%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+ E+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 254
>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 67.4 bits (163), Expect = 5e-11 Identities = 28/45 (62%), Positives = 36/45 (80%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+ E+ KR Sbjct: 210 KDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 254
>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4| Length = 262 Score = 67.0 bits (162), Expect = 6e-11 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+ G+ FATRL N+F IGKG K WVS+P+GKGI+LTI EE+ KR Sbjct: 210 KDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 254
>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B| Length = 262 Score = 60.8 bits (146), Expect = 4e-09 Identities = 27/45 (60%), Positives = 35/45 (77%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA +FATRL NVF IG+ K W+SLPKGKG+KL+I EE+ +R Sbjct: 211 KDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255
>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C| Length = 262 Score = 60.1 bits (144), Expect = 7e-09 Identities = 27/45 (60%), Positives = 35/45 (77%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA +FATRL NVF IG+ K W+SLPKGKG+KL+I EE+ +R Sbjct: 211 KDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A| Length = 262 Score = 60.1 bits (144), Expect = 7e-09 Identities = 27/45 (60%), Positives = 35/45 (77%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA +FATRL NVF IG+ K W+SLPKGKG+KL+I EE+ +R Sbjct: 211 KDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4| Length = 259 Score = 60.1 bits (144), Expect = 7e-09 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+ GH FATR+ NVF IGKG K VSLP G GI+L+I EE+ KR Sbjct: 210 KDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254
>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)| Length = 260 Score = 57.4 bits (137), Expect = 5e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA +QF TRL NVF IG+G K +SLPKGKGIKL+I EE+ R Sbjct: 211 KDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255
>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)| Length = 262 Score = 57.0 bits (136), Expect = 6e-08 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIG-KGTKPWVSLPKGKGIKLTIIEEQRKR 189 +DA + F TRL NVF IG + KPWVSLPKGKGIKL+I EE+ +R Sbjct: 211 KDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256
>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)| Length = 260 Score = 56.6 bits (135), Expect = 8e-08 Identities = 26/45 (57%), Positives = 35/45 (77%) Frame = -3 Query: 323 EDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQRKR 189 +D+ + F TRL NVF IG+ KP++SLPKGKGIKL+I EE+ +R Sbjct: 210 KDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 254
>RS4_DICDI (P51405) 40S ribosomal protein S4| Length = 266 Score = 53.5 bits (127), Expect = 7e-07 Identities = 23/41 (56%), Positives = 32/41 (78%) Frame = -3 Query: 320 DAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 198 D GHQFATRL NVF IGK ++ +VSLP GKG++ + ++E+ Sbjct: 211 DTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDER 251
>DRD5_HUMAN (P21918) D(1B) dopamine receptor (D(5) dopamine receptor) (D1beta| dopamine receptor) Length = 477 Score = 32.0 bits (71), Expect = 2.1 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 205 SMMVSLIPLPLGRLTQGLVPLPMVNTLPRRVANW*PWASSFQLPDTNA 348 S+++S IP+ L ++ LP +ANW PW F PD NA Sbjct: 168 SILISFIPVQLNWHRDQAASWGGLD-LPNNLANWTPWEEDFWEPDVNA 214
>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa| protein) Length = 201 Score = 30.0 bits (66), Expect = 8.1 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 531 RNLNDASPAQRPCDPSSYHESSD 599 ++LN ASP+ P DPSS H++ D Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,480,453 Number of Sequences: 219361 Number of extensions: 2433039 Number of successful extensions: 5134 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5133 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 7958637276 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
