ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26p04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
2ref|NM_189367.1| Oryza sativa (japonica cultivar-group), predic... 264 3e-67
3gb|AY105853.1| Zea mays PCO065335 mRNA sequence 165 2e-37
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
5dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
6ref|NM_105788.1| Arabidopsis thaliana SAG18 AT1G71190 (SAG18) mR... 56 1e-04
7gb|AC080165.6| Homo sapiens BAC clone RP11-747L21 from 2, comple... 48 0.034
8gb|AC096669.1| Homo sapiens BAC clone RP11-380G16 from 2, comple... 48 0.034
9emb|BX818127.1|CNS0ACO4 Arabidopsis thaliana Full-length cDNA Co... 46 0.14
10gb|AC016972.7|AC016972 Arabidopsis thaliana chromosome 1 BAC F23... 44 0.54
11gb|AC164613.3| Mus musculus BAC clone RP23-324B8 from chromosome... 42 2.1
12gb|AC110901.16| Mus musculus chromosome 13, clone RP24-165P9, co... 42 2.1
13gb|AC091564.12| Homo sapiens chromosome 11, clone RP11-732A19, c... 42 2.1
14gb|AC104695.2| Homo sapiens BAC clone RP11-373D23 from 2, comple... 42 2.1
15emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chr... 42 2.1
16gb|CP000234.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 8.4
17gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, c... 40 8.4
18emb|AJ276674.1|HSA276674 Homo sapiens PNR gene for photoreceptor... 40 8.4
19emb|BX088646.21| Zebrafish DNA sequence from clone DKEY-42F19 in... 40 8.4
20emb|BX538301.1|HSM806560 Homo sapiens genomic DNA; cDNA DKFZp686... 40 8.4
21gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, comp... 40 8.4
22gb|AC096773.3| Homo sapiens BAC clone RP11-810P8 from 4, complet... 40 8.4
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
25gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, com... 40 8.4
26gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, c... 40 8.4
27gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, com... 40 8.4
28dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
29dbj|AP004013.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
31emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.4
32emb|Z81031.1|CEC02D4 Caenorhabditis elegans Cosmid C02D4, comple... 40 8.4
33emb|AL671890.11| Mouse DNA sequence from clone RP23-408A13 on ch... 40 8.4
34gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, com... 40 8.4 
>dbj|AK067659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114K13, full
           insert sequence
          Length = 1183

 Score =  309 bits (156), Expect = 6e-81
 Identities = 308/361 (85%)
 Strand = Plus / Minus

                                                                       
Query: 255 cttccacatctggagtaagcttaccctgtcaggttcaattgtcctctttgacaacataag 314
           |||||||  ||||| ||| |||||||| || |||||||  ||||| || | || ||| ||
Sbjct: 888 cttccaccgctggaataaacttaccctttctggttcaacagtccttttggccagcatgag 829

                                                                       
Query: 315 agtcaagaaaacaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaat 374
            | |||||| ||||| ||||| ||||||  |||||| ||||||||||| |||||||||||
Sbjct: 828 tgccaagaacacaggcaccattgcagcagctagatgcttaagagtatgaccgctaacaat 769

                                                                       
Query: 375 gtcatgtgtccacctatatataggtttgtctgcagcctcttctactttggcaagaaggta 434
            | ||| |||||  ||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct: 768 ttgatgggtccatttatatataggtttatctgcggcctcttctaccttagcaaggaggta 709

                                                                       
Query: 435 aaatcctgctgcccacaaccagtagcttgaatgtgtatacattggtggaataactatagc 494
           ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 708 aaatcctgctgcccacagccaatagctcgaatgtgtatacattggtggaattacaatagc 649

                                                                       
Query: 495 catcacaggtattacaatgcatggaacaaactggattattgcatatggccgaagatcatc 554
           ||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct: 648 catcacaggtattgcaatgcatggaacaaactgaattactgcatatgggcgaagatcgtc 589

                                                                       
Query: 555 nnnnnnnctccaatacaggatgctcagtgcaccagcaataacaaggggtgcaagggactt 614
                  |||||||||| |||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 588 aaagaacctccaatacatgatgcttagtgcaccagcaataacaagaggtgctagggactt 529

            
Query: 615 t 615
           |
Sbjct: 528 t 528
to top
>ref|NM_189367.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 891

 Score =  264 bits (133), Expect = 3e-67
 Identities = 256/297 (86%)
 Strand = Plus / Minus

                                                                       
Query: 255 cttccacatctggagtaagcttaccctgtcaggttcaattgtcctctttgacaacataag 314
           |||||||  ||||| ||| |||||||| || |||||||  ||||| || | || ||| ||
Sbjct: 795 cttccaccgctggaataaacttaccctttctggttcaacagtccttttggccagcatgag 736

                                                                       
Query: 315 agtcaagaaaacaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaat 374
            | |||||| ||||| ||||| ||||||  |||||| ||||||||||| |||||||||||
Sbjct: 735 tgccaagaacacaggcaccattgcagcagctagatgcttaagagtatgaccgctaacaat 676

                                                                       
Query: 375 gtcatgtgtccacctatatataggtttgtctgcagcctcttctactttggcaagaaggta 434
            | ||| |||||  ||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct: 675 ttgatgggtccatttatatataggtttatctgcggcctcttctaccttagcaaggaggta 616

                                                                       
Query: 435 aaatcctgctgcccacaaccagtagcttgaatgtgtatacattggtggaataactatagc 494
           ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 615 aaatcctgctgcccacagccaatagctcgaatgtgtatacattggtggaattacaatagc 556

                                                                    
Query: 495 catcacaggtattacaatgcatggaacaaactggattattgcatatggccgaagatc 551
           ||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 555 catcacaggtattgcaatgcatggaacaaactgaattactgcatatgggcgaagatc 499



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 573 gatgctcagtgcaccagcaataacaaggggtgcaagggacttt 615
           |||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 486 gatgcttagtgcaccagcaataacaagaggtgctagggacttt 444
to top
>gb|AY105853.1| Zea mays PCO065335 mRNA sequence
          Length = 581

 Score =  165 bits (83), Expect = 2e-37
 Identities = 182/215 (84%)
 Strand = Plus / Minus

                                                                       
Query: 246 ccaactgatcttccacatctggagtaagcttaccctgtcaggttcaattgtcctctttga 305
           ||||||| |||||||| ||||||| ||||||| ||| || |||||  | ||||| || | 
Sbjct: 222 ccaactggtcttccacttctggagcaagcttatcctttctggttcggtagtccttttagc 163

                                                                       
Query: 306 caacataagagtcaagaaaacaggtaccatcgcagcacatagatgtttaagagtatgtcc 365
            | ||| |||| || |||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 162 tagcatgagagccaggaaaaccggtaccatcgcagcacatagatgcttaagagtatgacc 103

                                                                       
Query: 366 gctaacaatgtcatgtgtccacctatatataggtttgtctgcagcctcttctactttggc 425
            |||||||| | ||| |||||  | || |||| |||||| ||||||||||| ||||| ||
Sbjct: 102 actaacaatctgatgagtccaattgtagatagttttgtcagcagcctcttccactttagc 43

                                              
Query: 426 aagaaggtaaaatcctgctgcccacaaccagtagc 460
           ||| |||||||||||||||||||||||||||||||
Sbjct: 42  aaggaggtaaaatcctgctgcccacaaccagtagc 8
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 8e-34
 Identities = 104/113 (92%)
 Strand = Plus / Plus

                                                                            
Query: 439      cctgctgcccacaaccagtagcttgaatgtgtatacattggtggaataactatagccatc 498
                ||||||||||||| ||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 42407130 cctgctgcccacagccaatagctcgaatgtgtatacattggtggaattacaatagccatc 42407189

                                                                     
Query: 499      acaggtattacaatgcatggaacaaactggattattgcatatggccgaagatc 551
                ||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 42407190 acaggtattgcaatgcatggaacaaactgaattactgcatatgggcgaagatc 42407242



 Score =  113 bits (57), Expect = 7e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                            
Query: 318      caagaaaacaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaatgtc 377
                |||||| ||||| ||||| ||||||  |||||| ||||||||||| ||||||||||| | 
Sbjct: 42406720 caagaacacaggcaccattgcagcagctagatgcttaagagtatgaccgctaacaatttg 42406779

                                                                            
Query: 378      atgtgtccacctatatataggtttgtctgcagcctcttctactttggcaagaaggtaaaa 437
                ||| |||||  ||||||||||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct: 42406780 atgggtccatttatatataggtttatctgcggcctcttctaccttagcaaggaggtaaaa 42406839

                     
Query: 438      tcctg 442
                |||||
Sbjct: 42406840 tcctg 42406844



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 562      ctccaatacaggatgctcagtgcaccagcaataacaaggggtgcaagggacttt 615
                |||||||||| |||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 42407346 ctccaatacatgatgcttagtgcaccagcaataacaagaggtgctagggacttt 42407399
to top
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score =  153 bits (77), Expect = 8e-34
 Identities = 104/113 (92%)
 Strand = Plus / Plus

                                                                         
Query: 439   cctgctgcccacaaccagtagcttgaatgtgtatacattggtggaataactatagccatc 498
             ||||||||||||| ||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 66468 cctgctgcccacagccaatagctcgaatgtgtatacattggtggaattacaatagccatc 66527

                                                                  
Query: 499   acaggtattacaatgcatggaacaaactggattattgcatatggccgaagatc 551
             ||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 66528 acaggtattgcaatgcatggaacaaactgaattactgcatatgggcgaagatc 66580



 Score =  113 bits (57), Expect = 7e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                         
Query: 318   caagaaaacaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaatgtc 377
             |||||| ||||| ||||| ||||||  |||||| ||||||||||| ||||||||||| | 
Sbjct: 66058 caagaacacaggcaccattgcagcagctagatgcttaagagtatgaccgctaacaatttg 66117

                                                                         
Query: 378   atgtgtccacctatatataggtttgtctgcagcctcttctactttggcaagaaggtaaaa 437
             ||| |||||  ||||||||||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct: 66118 atgggtccatttatatataggtttatctgcggcctcttctaccttagcaaggaggtaaaa 66177

                  
Query: 438   tcctg 442
             |||||
Sbjct: 66178 tcctg 66182



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 562   ctccaatacaggatgctcagtgcaccagcaataacaaggggtgcaagggacttt 615
             |||||||||| |||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 66684 ctccaatacatgatgcttagtgcaccagcaataacaagaggtgctagggacttt 66737
to top
>ref|NM_105788.1| Arabidopsis thaliana SAG18 AT1G71190 (SAG18) mRNA, complete cds
          Length = 1078

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 162/204 (79%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 325 acaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaatgtcatgtgtc 384
           ||||| ||||| || ||||| ||||| || |||| ||| || |||| ||| | ||| |||
Sbjct: 755 acagggaccatagcggcacacagatgcttcagagaatgcccactaataatatgatgagtc 696

                                                                       
Query: 385 cacctatatataggtttgtctgcagcctcttctactttggcaagaaggtaaaatcctgct 444
           || ||||||||||| || || ||||| ||||| || ||||| |  || || || ||||| 
Sbjct: 695 cagctatatataggcttatccgcagcttcttccaccttggctaagagatagaaccctgca 636

                                                                       
Query: 445 gcccacaaccagtagcttgaatgtgtatacattggtgg-aataactatagccatcacagg 503
           ||||| | ||| ||  | ||||||||||||||||| || |||||  ||||||||||  ||
Sbjct: 635 gcccatagccaataagtggaatgtgtatacattggaggcaataa-aatagccatcaacgg 577

                                   
Query: 504 tattacaatgcatggaacaaactg 527
            || |||||||| |||||||||||
Sbjct: 576 aatcacaatgcaaggaacaaactg 553
to top
>gb|AC080165.6| Homo sapiens BAC clone RP11-747L21 from 2, complete sequence
          Length = 63279

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 142   acattatgaaaaacacatatctac 165
             ||||||||||||||||||||||||
Sbjct: 61386 acattatgaaaaacacatatctac 61363
to top
>gb|AC096669.1| Homo sapiens BAC clone RP11-380G16 from 2, complete sequence
          Length = 218670

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 142 acattatgaaaaacacatatctac 165
           ||||||||||||||||||||||||
Sbjct: 107 acattatgaaaaacacatatctac 84
to top
>emb|BX818127.1|CNS0ACO4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL62ZD11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 484

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 122/155 (78%)
 Strand = Plus / Minus

                                                                       
Query: 325 acaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaatgtcatgtgtc 384
           ||||| ||||| || ||||| ||||| || |||| ||| || |||| ||| | ||| |||
Sbjct: 157 acagggaccatagcggcacacagatgcttcagagaatgcccactaataatatgatgagtc 98

                                                                       
Query: 385 cacctatatataggtttgtctgcagcctcttctactttggcaagaaggtaaaatcctgct 444
           || ||||||||||| || || ||||| ||||| || ||||| |  || || || ||||| 
Sbjct: 97  cagctatatataggcttatccgcagcttcttccaccttggctaagagatagaaccctgca 38

                                              
Query: 445 gcccacaaccagtagcttgaatgtgtatacattgg 479
           ||||| | ||| ||  | |||||||||||||||||
Sbjct: 37  gcccatagccaataagtggaatgtgtatacattgg 3
to top
>gb|AC016972.7|AC016972 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete
             sequence
          Length = 66653

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 57/66 (86%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                         
Query: 463   gaatgtgtatacattggtgg-aataactatagccatcacaggtattacaatgcatggaac 521
             ||||||||||||||||| || |||||  ||||||||||  || || |||||||| |||||
Sbjct: 58824 gaatgtgtatacattggaggcaataaa-atagccatcaacggaatcacaatgcaaggaac 58882

                   
Query: 522   aaactg 527
             ||||||
Sbjct: 58883 aaactg 58888



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                         
Query: 325   acaggtaccatcgcagcacatagatgtttaagagtatgtccgctaacaatgtcatgtgtc 384
             ||||| ||||| || ||||| ||||| || |||| ||| || |||| ||| | ||| |||
Sbjct: 58581 acagggaccatagcggcacacagatgcttcagagaatgcccactaataatatgatgagtc 58640

                                                      
Query: 385   cacctatatataggtttgtctgcagcctcttctactttggc 425
             || ||||||||||| || || ||||| ||||| || |||||
Sbjct: 58641 cagctatatataggcttatccgcagcttcttccaccttggc 58681
to top
>gb|AC164613.3| Mus musculus BAC clone RP23-324B8 from chromosome 13, complete sequence
          Length = 197469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 458   agcttgaatgtgtatacattg 478
             |||||||||||||||||||||
Sbjct: 21871 agcttgaatgtgtatacattg 21851
to top
>gb|AC110901.16| Mus musculus chromosome 13, clone RP24-165P9, complete sequence
          Length = 179128

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   agcttgaatgtgtatacattg 478
             |||||||||||||||||||||
Sbjct: 61145 agcttgaatgtgtatacattg 61165
to top
>gb|AC091564.12| Homo sapiens chromosome 11, clone RP11-732A19, complete sequence
          Length = 211735

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 241    tctctccaactgatcttccacatct 265
              ||||||| |||||||||||||||||
Sbjct: 155734 tctctcccactgatcttccacatct 155710
to top
>gb|AC104695.2| Homo sapiens BAC clone RP11-373D23 from 2, complete sequence
          Length = 157665

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 430   aggtaaaatcctgctgcccac 450
             |||||||||||||||||||||
Sbjct: 69975 aggtaaaatcctgctgcccac 69955
to top
>emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chromosome 2, complete
             sequence
          Length = 142263

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 152   aaacacatatctactgttgtt 172
             |||||||||||||||||||||
Sbjct: 60148 aaacacatatctactgttgtt 60128
to top
>gb|CP000234.1| Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,
              complete genome
          Length = 242436

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    gatactatttttacacttcg 137
              ||||||||||||||||||||
Sbjct: 241788 gatactatttttacacttcg 241807
to top
>gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, complete sequence
          Length = 150680

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   tgtatacattggtggaataa 487
             ||||||||||||||||||||
Sbjct: 37347 tgtatacattggtggaataa 37366
to top
>emb|AJ276674.1|HSA276674 Homo sapiens PNR gene for photoreceptor-specific nuclear receptor,
             exons 1-8
          Length = 35487

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   tacaggatgctcagtgcacc 587
             ||||||||||||||||||||
Sbjct: 14588 tacaggatgctcagtgcacc 14569
to top
>emb|BX088646.21| Zebrafish DNA sequence from clone DKEY-42F19 in linkage group 14,
              complete sequence
          Length = 235682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gccctgatatacatttttcc 20
              ||||||||||||||||||||
Sbjct: 204231 gccctgatatacatttttcc 204250
to top
>emb|BX538301.1|HSM806560 Homo sapiens genomic DNA; cDNA DKFZp686L1698 (from clone
           DKFZp686L1698)
          Length = 3765

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 568 tacaggatgctcagtgcacc 587
           ||||||||||||||||||||
Sbjct: 550 tacaggatgctcagtgcacc 531
to top
>gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, complete sequence
          Length = 178864

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   atattcagatggatactatt 126
             ||||||||||||||||||||
Sbjct: 25462 atattcagatggatactatt 25481
to top
>gb|AC096773.3| Homo sapiens BAC clone RP11-810P8 from 4, complete sequence
          Length = 136403

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   acacatatctactgttgttc 173
             ||||||||||||||||||||
Sbjct: 88426 acacatatctactgttgttc 88445
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 460      cttgaatgtgtatacattgg 479
                ||||||||||||||||||||
Sbjct: 12252398 cttgaatgtgtatacattgg 12252379
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 460     cttgaatgtgtatacattgg 479
               ||||||||||||||||||||
Sbjct: 9392350 cttgaatgtgtatacattgg 9392369
to top
>gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, complete sequence
          Length = 157267

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   tacaggatgctcagtgcacc 587
             ||||||||||||||||||||
Sbjct: 90375 tacaggatgctcagtgcacc 90356
to top
>gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, complete sequence
          Length = 164186

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   tgtatacattggtggaataa 487
             ||||||||||||||||||||
Sbjct: 28768 tgtatacattggtggaataa 28749
to top
>gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, complete sequence
          Length = 137261

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   tgtatacattggtggaataa 487
             ||||||||||||||||||||
Sbjct: 42949 tgtatacattggtggaataa 42930
to top
>dbj|AP004155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_D12
          Length = 97572

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cttgaatgtgtatacattgg 479
             ||||||||||||||||||||
Sbjct: 16941 cttgaatgtgtatacattgg 16960
to top
>dbj|AP004013.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1575_B01
          Length = 86158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cttgaatgtgtatacattgg 479
             ||||||||||||||||||||
Sbjct: 68579 cttgaatgtgtatacattgg 68598
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 460      cttgaatgtgtatacattgg 479
                ||||||||||||||||||||
Sbjct: 12206768 cttgaatgtgtatacattgg 12206749
to top
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cttgaatgtgtatacattgg 479
             ||||||||||||||||||||
Sbjct: 44919 cttgaatgtgtatacattgg 44938
to top
>emb|Z81031.1|CEC02D4 Caenorhabditis elegans Cosmid C02D4, complete sequence
          Length = 28611

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 195 ataatcatatttgacatctaccgt 218
           |||||| |||||||||||||||||
Sbjct: 908 ataatcgtatttgacatctaccgt 931
to top
>emb|AL671890.11| Mouse DNA sequence from clone RP23-408A13 on chromosome X, complete
              sequence
          Length = 198788

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    tccacctatatataggtttg 402
              ||||||||||||||||||||
Sbjct: 146341 tccacctatatataggtttg 146360
to top
>gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, complete sequence
          Length = 133778

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   tgtatacattggtggaataa 487
             ||||||||||||||||||||
Sbjct: 32614 tgtatacattggtggaataa 32595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,278,079
Number of Sequences: 3902068
Number of extensions: 5278079
Number of successful extensions: 89952
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89800
Number of HSP's gapped (non-prelim): 147
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top