>gb|AY123416.1| Triticum aestivum putative cytochrome c oxidase subunit mRNA,
           complete cds
          Length = 689

 Score =  163 bits (82), Expect = 2e-37
 Identities = 118/132 (89%), Gaps = 1/132 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ccattctcccgtngctcgttccaacgctcaanccattcactngnncatagtgatcganng 61
           |||||| ||||| ||||||||||||| |||| ||||||||| |  |||||||||||   |
Sbjct: 464 ccattcccccgttgctcgttccaacgttcaacccattcacttgggcatagtgatcggtag 405

                                                                       
Query: 62  tacttngcaaacttttcacactcaggagcatcatctncttttgcagctacgacacctatg 121
           ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 404 tactttgcaaacttttcacactcaggagcatcatctccttttgcagctacg-cacctatg 346

                       
Query: 122 gtatncaacata 133
           |||| |||||||
Sbjct: 345 gtattcaacata 334

>ref|NM_189870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 525

 Score =  109 bits (55), Expect = 2e-21
 Identities = 109/129 (84%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccattctcccgtngctcgttccaacgctcaanccattcactngnncatagtgatcgann 60
           ||||||||| ||| | |||||||||||||||| ||||||||| |  || |||||||||  
Sbjct: 504 gccattctcacgttgttcgttccaacgctcaatccattcacttgggcaaagtgatcgata 445

                                                                       
Query: 61  gtacttngcaaacttttcacactcaggagcatcatctncttttgcagctacgacacctat 120
            || || ||||| |||||||||||||||||| | ||| ||||||||||||| ||||||||
Sbjct: 444 atattttgcaaatttttcacactcaggagcaccctctccttttgcagctac-acacctat 386

                    
Query: 121 ggtatncaa 129
           | ||| |||
Sbjct: 385 gatattcaa 377

>gb|AY103760.1| Zea mays PCO110275 mRNA sequence
          Length = 2705

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 98/119 (82%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                        
Query: 15   gctcgttccaacgctcaanccattcactngnncatagtgatcganngtacttngcaaact 74
            |||||||||| || |||| ||||||||  |  || || ||||||  |||||| |||||||
Sbjct: 2421 gctcgttccagcgttcaacccattcacctgggcacagggatcgatagtacttggcaaact 2362

                                                                       
Query: 75   tttcacactcaggagcatcatctncttttgcagctacgacacctatggtatncaacata 133
            | ||||||||||| ||||| ||  |||||||||| || |||||| |||||| |||||||
Sbjct: 2361 tatcacactcaggtgcatcctcaccttttgcagccac-acacctgtggtattcaacata 2304

>ref|XM_470804.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 875

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 8   tcccgtngctcgttccaacgctcaanccattcactngnncatagtgatcganngtacttn 67
           |||||| |||| ||||||||||||| |||||| |  |  || || ||||||  ||| || 
Sbjct: 546 tcccgttgctcattccaacgctcaacccattcgcctgggcaaagagatcgatagtatttt 487

                                                        
Query: 68  gcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
           |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 486 gcaaacttatcacactcaggagcatcctcccctttcgcagctacg 442

>dbj|AK120174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033A17, full
           insert sequence
          Length = 887

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 8   tcccgtngctcgttccaacgctcaanccattcactngnncatagtgatcganngtacttn 67
           |||||| |||| ||||||||||||| |||||| |  |  || || ||||||  ||| || 
Sbjct: 578 tcccgttgctcattccaacgctcaacccattcgcctgggcaaagagatcgatagtatttt 519

                                                        
Query: 68  gcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
           |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 518 gcaaacttatcacactcaggagcatcctcccctttcgcagctacg 474

>dbj|AB025187.1| Oryza sativa (japonica cultivar-group) mRNA for cytochrome c
           oxidase subunit 6b-1, complete cds
          Length = 951

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 8   tcccgtngctcgttccaacgctcaanccattcactngnncatagtgatcganngtacttn 67
           |||||| |||| ||||||||||||| |||||| |  |  || || ||||||  ||| || 
Sbjct: 588 tcccgttgctcattccaacgctcaacccattcgcctgggcaaagagatcgatagtatttt 529

                                                        
Query: 68  gcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
           |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 528 gcaaacttatcacactcaggagcatcctcccctttcgcagctacg 484

>gb|BT017421.1| Zea mays clone EL01N0402E11.c mRNA sequence
          Length = 832

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 99/123 (80%), Gaps = 1/123 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  cgtngctcgttccaacgctcaanccattcactngnncatagtgatcganngtacttngca 70
           ||| |||||||||| || |||| ||||||||  |  || || ||||||  |||||| || 
Sbjct: 549 cgttgctcgttccagcgatcaacccattcacctgggcacagggatcgatagtacttggcg 490

                                                                       
Query: 71  aacttttcacactcaggagcatcatctncttttgcagctacgacacctatggtatncaac 130
           ||||| ||||||||||| ||||| ||  |||||||||| || |||||| || ||| ||||
Sbjct: 489 aacttatcacactcaggtgcatcctcaccttttgcagccac-acacctgtgatattcaac 431

              
Query: 131 ata 133
           |||
Sbjct: 430 ata 428

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                            
Query: 34       ccattcactngnncatagtgatcganngtacttngcaaacttttcacactcaggagcatc 93
                ||||||||| |  || |||||||||   || || ||||| |||||||||||||||||| |
Sbjct: 25638909 ccattcacttgggcaaagtgatcgataatattttgcaaatttttcacactcaggagcacc 25638968

                                  
Query: 94       atctncttttgcagctac 111
                 ||| |||||||||||||
Sbjct: 25638969 ctctccttttgcagctac 25638986



 Score = 42.1 bits (21), Expect = 0.41
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 1        gccattctcccgtngctcgttccaacgctcaa 32
                ||||||||| ||| | ||||||||||||||||
Sbjct: 25638552 gccattctcacgttgttcgttccaacgctcaa 25638583

>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                         
Query: 34    ccattcactngnncatagtgatcganngtacttngcaaacttttcacactcaggagcatc 93
             ||||||||| |  || |||||||||   || || ||||| |||||||||||||||||| |
Sbjct: 92882 ccattcacttgggcaaagtgatcgataatattttgcaaatttttcacactcaggagcacc 92941

                               
Query: 94    atctncttttgcagctac 111
              ||| |||||||||||||
Sbjct: 92942 ctctccttttgcagctac 92959



 Score = 42.1 bits (21), Expect = 0.41
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gccattctcccgtngctcgttccaacgctcaa 32
             ||||||||| ||| | ||||||||||||||||
Sbjct: 92525 gccattctcacgttgttcgttccaacgctcaa 92556

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                            
Query: 53       gatcganngtacttngcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
                ||||||  ||| || |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 15479145 gatcgatagtattttgcaaacttatcacactcaggagcatcctcccctttcgcagctacg 15479086

>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 53    gatcganngtacttngcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
             ||||||  ||| || |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 22381 gatcgatagtattttgcaaacttatcacactcaggagcatcctcccctttcgcagctacg 22440

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                            
Query: 53       gatcganngtacttngcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
                ||||||  ||| || |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 15473679 gatcgatagtattttgcaaacttatcacactcaggagcatcctcccctttcgcagctacg 15473620

>dbj|AB047975.1| Oryza sativa (japonica cultivar-group) COX6b1 gene for cytochrome c
            oxidase subunit 6b, complete cds
          Length = 4626

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 53   gatcganngtacttngcaaacttttcacactcaggagcatcatctncttttgcagctacg 112
            ||||||  ||| || |||||||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 3098 gatcgatagtattttgcaaacttatcacactcaggagcatcctcccctttcgcagctacg 3039

>dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016,
            complete sequence
          Length = 122116

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 68   gcaaacttttcacactcaggagcatcatctncttttgcagctac 111
            |||||||| ||||| ||||| ||| ||||| |||||||||||||
Sbjct: 7547 gcaaacttgtcacattcaggtgcaccatctccttttgcagctac 7504

>gb|DQ302201.1| Pontopristia sp. TN-2005b cytochrome oxidase subunit I (CoI) gene,
           partial cds; mitochondrial
          Length = 810

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tttcacactcaggagcatca 94
           ||||||||||||||||||||
Sbjct: 125 tttcacactcaggagcatca 144

>gb|DQ302200.1| Pontopristia sp. TN-2005a cytochrome oxidase subunit I (CoI) gene,
           partial cds; mitochondrial
          Length = 810

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tttcacactcaggagcatca 94
           ||||||||||||||||||||
Sbjct: 125 tttcacactcaggagcatca 144

>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence
          Length = 210514

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     aaacttttcacactcagga 88
              |||||||||||||||||||
Sbjct: 198168 aaacttttcacactcagga 198150

>gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequence
          Length = 94647

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 85    aggagcatcatctncttttgca 106
             ||||||||||||| ||||||||
Sbjct: 59341 aggagcatcatctacttttgca 59362

>gb|AC139853.17| Medicago truncatula clone mth2-13d20, complete sequence
          Length = 93375

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 85    aggagcatcatctncttttgca 106
             ||||||||||||| ||||||||
Sbjct: 78947 aggagcatcatctacttttgca 78968

>gb|AC122472.5| Mus musculus BAC clone RP24-323G20 from chromosome 10, complete sequence
          Length = 180612

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     aaacttttcacactcagga 88
              |||||||||||||||||||
Sbjct: 143441 aaacttttcacactcagga 143459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 378,510
Number of Sequences: 3902068
Number of extensions: 378510
Number of successful extensions: 18066
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18014
Number of HSP's gapped (non-prelim): 48
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)