ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27e07 |
|---|---|
| Clone Library Name | barley_pub |
>COX12_SCHPO (O94581) Cytochrome c oxidase polypeptide VIb (EC 1.9.3.1)| Length = 83 Score = 104 bits (260), Expect = 2e-22 Identities = 41/65 (63%), Positives = 52/65 (80%) Frame = -1 Query: 406 FRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECEKFAKYYRSLCPSEWVERWNEQRENGT 227 +RFP TNQT+HCF Y++Y RC+ AKG+D C++F Y+SLCP EWVERW+EQRENGT Sbjct: 19 YRFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGT 78 Query: 226 FPGPL 212 FP P+ Sbjct: 79 FPAPI 83
>COX12_YEAST (Q01519) Cytochrome c oxidase polypeptide VIb (EC 1.9.3.1) (AED)| Length = 82 Score = 88.6 bits (218), Expect = 1e-17 Identities = 34/66 (51%), Positives = 47/66 (71%) Frame = -1 Query: 409 DFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECEKFAKYYRSLCPSEWVERWNEQRENG 230 D RFP NQT+HC+ YV+YH+CV KG+D C+ F K Y +LCP +W+E+W++QRE G Sbjct: 14 DARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKG 73 Query: 229 TFPGPL 212 F G + Sbjct: 74 IFAGDI 79
>CX6B1_PONPY (Q5RCT0) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 87.4 bits (215), Expect = 3e-17 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP+ WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWD 73 Query: 247 EQRENGTFPGPL 212 EQR GTFPG + Sbjct: 74 EQRAEGTFPGKI 85
>CX6B1_HUMAN (P14854) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 87.4 bits (215), Expect = 3e-17 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP+ WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWD 73 Query: 247 EQRENGTFPGPL 212 EQR GTFPG + Sbjct: 74 EQRAEGTFPGKI 85
>CX6B1_TARSY (Q7YRK6) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 85.1 bits (209), Expect = 2e-16 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWD 73 Query: 247 EQRENGTFPGPL 212 ++R GTFPG + Sbjct: 74 DRRAEGTFPGKI 85
>CX6B1_BOVIN (P00429) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) (Cytochrome c oxidase polypeptide VII) (Cytochrome c oxidase subunit AED) Length = 85 Score = 85.1 bits (209), Expect = 2e-16 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWD 73 Query: 247 EQRENGTFPGPL 212 ++R GTFPG + Sbjct: 74 DRRAEGTFPGKI 85
>CX6B1_MACMU (Q53CG4) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 86 Score = 84.3 bits (207), Expect = 3e-16 Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC A KG + CE + + Y+SLCP+ WV W+ Sbjct: 15 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWD 74 Query: 247 EQRENGTFPGPL 212 EQR GTFPG + Sbjct: 75 EQRAEGTFPGKI 86
>CX6B1_MACFA (Q4R374) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 86 Score = 84.3 bits (207), Expect = 3e-16 Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQTR+C+ Y+++HRC A KG + CE + + Y+SLCP+ WV W+ Sbjct: 15 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWD 74 Query: 247 EQRENGTFPGPL 212 EQR GTFPG + Sbjct: 75 EQRAEGTFPGKI 86
>CX6B2_MOUSE (Q80ZN9) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 82.8 bits (203), Expect = 8e-16 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Frame = -1 Query: 415 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 245 P D RFP NQTR+C+ +++YHRCV +G CE + + + SLCP WV+RWNE Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNE 77 Query: 244 QRENGTFPGPL 212 Q + GTFPG + Sbjct: 78 QIKQGTFPGKI 88
>CX6B2_RAT (Q6YFQ1) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 82.0 bits (201), Expect = 1e-15 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Frame = -1 Query: 415 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 245 P D RFP NQTR+C+ +++YHRCV +G + C+ + + + SLCP WV+RWNE Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNE 77 Query: 244 QRENGTFPGPL 212 Q + GTFPG + Sbjct: 78 QIKQGTFPGKI 88
>CX6B1_MOUSE (P56391) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 80.9 bits (198), Expect = 3e-15 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Frame = -1 Query: 418 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 248 AP D RFP NQT++C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWD 73 Query: 247 EQRENGTFPGPL 212 ++ GTFPG + Sbjct: 74 DRIAEGTFPGKI 85
>CX6B2_BOVIN (Q6YFP9) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 79.0 bits (193), Expect = 1e-14 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Frame = -1 Query: 415 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 245 P D RFP NQTR+C+ +++YHRC+ +G CE + + Y SLCP WV+RW E Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKE 77 Query: 244 QRENGTFPGPL 212 Q ++GTF G + Sbjct: 78 QIKDGTFAGKI 88
>CX6B2_HUMAN (Q6YFQ2) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 77.0 bits (188), Expect = 4e-14 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Frame = -1 Query: 415 PADFRFPTTNQTRHCFTRYVEYHRCVAAK---GDDAPECEKFAKYYRSLCPSEWVERWNE 245 P D RFP+ NQ R+C+ +++YHRC+ + G CE + + Y SLCP WVE WNE Sbjct: 18 PFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNE 77 Query: 244 QRENGTFPGPL 212 Q +NG F G + Sbjct: 78 QIKNGIFAGKI 88
>CIN_DROME (P39205) Molybdenum cofactor synthesis protein cinnamon| Length = 674 Score = 34.7 bits (78), Expect = 0.25 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%) Frame = -1 Query: 400 FPTTNQTRHCFTRYVEYHRCV--------AAKGDDAPE-CEKFAKYYRSLCPSEWVERWN 248 FP + + C+ EY +C+ + G+ P C+ K + CP +WV+ ++ Sbjct: 3 FPDKAERKKCWNNRDEYWKCLEEHAPKHSSTSGEKVPTPCQSLRKSFEQSCPGQWVKHFD 62 Query: 247 EQRENGTF 224 +R F Sbjct: 63 RKRTYDQF 70
>HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)| Length = 1323 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +2 Query: 413 WSCLNHN---FWFLFSFLRSLIAFLCGRNGFFRFWLFHLRSFTFFLNRSSGLISW*GF 577 WSC++ + F + S+L I CG N W+ LR TFF + L + GF Sbjct: 722 WSCISLSIAIFTGVTSYLSEFILNYCGEN-----WIVSLRQLTFFKLNNQDLSFFTGF 774
>SMAL1_MOUSE (Q8BJL0) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (mharp) Length = 910 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 257 ALERATGEWHIPWTPVSFSGAGRTNIPSSPPTSLVTGQSYFVPRIR 120 A+ER + P S G+T++PS+P + VTG+ + R+R Sbjct: 256 AVERLSTVSLKPLDEAGGSVGGQTSLPSAPSLTFVTGKCMLISRVR 301
>ZMPB_STRR6 (Q8DQN5) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)| Length = 1876 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 643 EKPAEEKSTTSTVAEVVPQKDTE--TSPADETAAPVEEKS 530 +KPAEE V P+KD + P ++ AP EEK+ Sbjct: 270 DKPAEESKVEQAGEPVAPRKDEQAPVEPENQPEAPEEEKA 309
>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament| protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1072 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -1 Query: 643 EKPAEEKSTTSTVAEVV--PQKDTETSPADETAAPVEEKS 530 E+ EE +TTS AE P+K+T++ +E +P E KS Sbjct: 483 EEGGEEAATTSPPAEEAASPEKETKSPVKEEAKSPAEAKS 522 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,177,290 Number of Sequences: 219361 Number of extensions: 1824808 Number of successful extensions: 4717 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4703 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
