ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26o24 |
|---|---|
| Clone Library Name | barley_pub |
>CNOT8_MOUSE (Q9D8X5) CCR4-NOT transcription complex subunit 8 (CCR4-associated| factor 8) Length = 292 Score = 129 bits (325), Expect = 5e-30 Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 29/169 (17%) Frame = -1 Query: 540 WQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAEVQW 361 WQFNF F+ D + DS DL NSG+ F + EG DT HFAELLM+SGV+L V+W Sbjct: 95 WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKW 153 Query: 360 VTFHSG---------------------------IYFPVLYDIKHLMKYCGSLHGGLSKLG 262 ++FHSG ++FP +YD+K+LMK C +L GGL ++ Sbjct: 154 LSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVA 213 Query: 261 ELXXVQRVGICHQAGSXSLLTXQCFKKLKEVYFRGSTEN--YAGVLYGL 121 + +QR+G HQAGS SLLT F ++KE++F S ++ Y G LYGL Sbjct: 214 DQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>CNOT8_HUMAN (Q9UFF9) CCR4-NOT transcription complex subunit 8 (CCR4-associated| factor 8) (CAF1-like protein) (CALIFp) (CAF2) Length = 292 Score = 129 bits (325), Expect = 5e-30 Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 29/169 (17%) Frame = -1 Query: 540 WQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAEVQW 361 WQFNF F+ D + DS DL NSG+ F + EG DT HFAELLM+SGV+L V+W Sbjct: 95 WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKW 153 Query: 360 VTFHSG---------------------------IYFPVLYDIKHLMKYCGSLHGGLSKLG 262 ++FHSG ++FP +YD+K+LMK C +L GGL ++ Sbjct: 154 LSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVA 213 Query: 261 ELXXVQRVGICHQAGSXSLLTXQCFKKLKEVYFRGSTEN--YAGVLYGL 121 + +QR+G HQAGS SLLT F ++KE++F S ++ Y G LYGL Sbjct: 214 DQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>CNOT7_MOUSE (Q60809) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) Length = 285 Score = 122 bits (305), Expect = 1e-27 Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 29/169 (17%) Frame = -1 Query: 540 WQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAEVQW 361 WQFNF F+ D DS +L SGI F + EG +T +FAELLM+SGV+L V+W Sbjct: 95 WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKW 153 Query: 360 VTFHSG---------------------------IYFPVLYDIKHLMKYCGSLHGGLSKLG 262 ++FHSG ++FPV+YD+K+LMK C +L GGL ++ Sbjct: 154 LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVA 213 Query: 261 ELXXVQRVGICHQAGSXSLLTXQCFKKLKEVYFRGSTEN--YAGVLYGL 121 E ++R+G HQAGS SLLT F K++E++F ++ Y G LYGL Sbjct: 214 EQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>CNOT7_HUMAN (Q9UIV1) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) (BTG1-binding factor 1) Length = 285 Score = 122 bits (305), Expect = 1e-27 Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 29/169 (17%) Frame = -1 Query: 540 WQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAEVQW 361 WQFNF F+ D DS +L SGI F + EG +T +FAELLM+SGV+L V+W Sbjct: 95 WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKW 153 Query: 360 VTFHSG---------------------------IYFPVLYDIKHLMKYCGSLHGGLSKLG 262 ++FHSG ++FPV+YD+K+LMK C +L GGL ++ Sbjct: 154 LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVA 213 Query: 261 ELXXVQRVGICHQAGSXSLLTXQCFKKLKEVYFRGSTEN--YAGVLYGL 121 E ++R+G HQAGS SLLT F K++E++F ++ Y G LYGL Sbjct: 214 EQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
>CNOT7_CAEEL (Q17345) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) Length = 310 Score = 84.7 bits (208), Expect = 2e-16 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 31/184 (16%) Frame = -1 Query: 582 GALPARGTGGRPCAWQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAEL 403 G LP G WQFNF F D + +S ++ R +GIDF G T F EL Sbjct: 97 GELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGEL 150 Query: 402 LMSSGVLLNAEVQWVTFHSG---------------------------IYFPVLYDIKHLM 304 L +SG++ + + W+TF SG FP +DIK L+ Sbjct: 151 LTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILL 210 Query: 303 K--YCGS--LHGGLSKLGELXXVQRVGICHQAGSXSLLTXQCFKKLKEVYFRGSTENYAG 136 + C S L GGL ++ + V+R G+ HQAGS +LLT F K+K+ +F + A Sbjct: 211 RTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAP 270 Query: 135 VLYG 124 ++ G Sbjct: 271 LICG 274
>POP2_YEAST (P39008) Protein POP2 (CCR4-associated factor 1)| Length = 433 Score = 69.3 bits (168), Expect = 8e-12 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 47/193 (24%) Frame = -1 Query: 549 PCAWQFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAE 370 P WQFNF FDP+ + + +S +L R SGI+F++ G D F++LLM SG++++ Sbjct: 241 PSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDS 299 Query: 369 VQWVTFHSGI---------------------------YFPVLYDIKHLMKYCGSLHG--- 280 V W+T+H+ Y P YD+ + K Sbjct: 300 VTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQL 359 Query: 279 ------------GLSKLGELXXVQRVGICHQAGSXSLLTXQCF---KKLKEVYFRGSTE- 148 L+ L + + R I G SLL F KL F T+ Sbjct: 360 QQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDF 419 Query: 147 -NYAGVLYGLISD 112 Y GV+YG+ D Sbjct: 420 AKYQGVIYGIDGD 432
>PBP2_ECOLI (P0AD65) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 68 THSMSRAXGGLFSPPSEIRPYNTPA*FSVDPLKYTSFSFLKHXKVSSXFDPAWWQIP 238 T ++RA G++ P S ++PY + S + + ++ FDP WWQ+P Sbjct: 315 TPLVNRATQGVYPPASTVKPYVAVSALSAGVI----------TRNTTLFDPGWWQLP 361
>PBP2_ECOL6 (P0AD66) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 68 THSMSRAXGGLFSPPSEIRPYNTPA*FSVDPLKYTSFSFLKHXKVSSXFDPAWWQIP 238 T ++RA G++ P S ++PY + S + + ++ FDP WWQ+P Sbjct: 315 TPLVNRATQGVYPPASTVKPYVAVSALSAGVI----------TRNTTLFDPGWWQLP 361
>PBP2_ECO57 (P0AD67) Penicillin-binding protein 2 (PBP-2)| Length = 633 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 68 THSMSRAXGGLFSPPSEIRPYNTPA*FSVDPLKYTSFSFLKHXKVSSXFDPAWWQIP 238 T ++RA G++ P S ++PY + S + + ++ FDP WWQ+P Sbjct: 315 TPLVNRATQGVYPPASTVKPYVAVSALSAGVI----------TRNTTLFDPGWWQLP 361
>IORA_BREDI (Q51697) Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)| Length = 152 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = -3 Query: 277 LEQAW*ATXCPTCGDLPPGWVKXTADL--XVLQKAEGGVFQRIDRELCRC 134 L++AW A P CG G + A L V + ++ + + +D LCRC Sbjct: 85 LQRAWIAEQVPQCGYCQSGQIMQAAALLKKVPKPSDAQIVEAMDGNLCRC 134
>PRIS_METMA (Q8PVZ4) Probable DNA primase small subunit (EC 2.7.7.-)| Length = 414 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 354 FHSGIYFPVLYDIKHLMKYCGSLHGGLSKLGELXXVQRVGIC 229 F + + PV DIK L++ GSLHGG L V+++ +C Sbjct: 307 FGASVDEPVTADIKRLIRVPGSLHGGSGML-----VKKLALC 343
>PP12_TRYBB (P23734) Serine/threonine-protein phosphatase PP1(5.9) (EC| 3.1.3.16) Length = 346 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = -1 Query: 384 LLNAEVQWVTFHSGIYF---PVLYDIKHLMKYCGSLHGGLSKL 265 L AEV+W+ S F P+L +I ++ CG +HG + L Sbjct: 68 LTEAEVRWLVMESRALFMSQPMLVEIAAPVRICGDVHGQYTDL 110
>PP11_TRYBB (P23733) Serine/threonine-protein phosphatase PP1(4.8) (EC| 3.1.3.16) Length = 346 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = -1 Query: 384 LLNAEVQWVTFHSGIYF---PVLYDIKHLMKYCGSLHGGLSKL 265 L AEV+W+ S F P+L +I ++ CG +HG + L Sbjct: 68 LTEAEVRWLVMESRALFMSQPMLVEIAAPVRICGDVHGQYTDL 110
>CBPA5_MOUSE (Q8R4H4) Carboxypeptidase A5 precursor (EC 3.4.17.1)| Length = 436 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 537 QFNFXGFDPRSDXANADSXDLXRNSGIDFDRFTTEGADTGHFAELLMSSGVLLNAEVQWV 358 Q+ F A+ S D +SGI + F+ E DTG + LL +S ++ AE W+ Sbjct: 364 QYIFGSISTTLYSASGISVDWAYDSGIKY-AFSFELRDTGQYGFLLPASQIVPTAEETWM 422 Query: 357 TFHS 346 + Sbjct: 423 ALQT 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,451,854 Number of Sequences: 219361 Number of extensions: 1458537 Number of successful extensions: 3788 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3783 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
