ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26o24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009199.1| Triticum aestivum clone wle1n.pk0005.d9:fis, full insert mRNA sequence Length = 1182 Score = 507 bits (256), Expect = e-140 Identities = 295/310 (95%) Strand = Plus / Minus Query: 35 caaccataacattgtcttatttgactatccattactcattcgatgagcagagctgntggt 94 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1128 caaccataacattgtcttatttgactatccattactcattcgatgagcagagctgctggt 1069 Query: 95 ggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctcggtc 154 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1068 ggtctgttctccccaccatcagaaataagaccatacaatacaccggcataattctcggtc 1009 Query: 155 gatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtganttt 214 |||||||||||||| ||||||||||||||| ||||||||| ||||||||||| || | Sbjct: 1008 gatcctctgaaatatgcctccttcagcttttggaagcactgcaaggtcagcagcgagtcg 949 Query: 215 gacccagcctggtggcagatccccacacgttggacannangtagctcaccaagcttgctc 274 |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 948 gacccagcctggtggcagatccccacacgttggacaccaagtagctcaccaagcttgctc 889 Query: 275 aagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtaccggg 334 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 888 aagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagcacaggg 829 Query: 335 aagtagattc 344 |||||||||| Sbjct: 828 aagtagattc 819 Score = 331 bits (167), Expect = 2e-87 Identities = 218/240 (90%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 738 ccgctgtggaatgtgacccactggagctcagcgttgagcaggacgcccgacgacatgagc 679 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgatccca 463 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 agctcggcgaagtggcctgtgtcagcaccctcggtggtgaagcggtcgaagtcgatcccg 619 Query: 464 ctgttgcgtancaggtcnatggagtcggcgttggcggngtctgancgcggatcgaanccc 523 |||||||||| |||||| |||||||| |||||||||| |||||| ||||||||||| ||| Sbjct: 618 ctgttgcgtagcaggtcgatggagtcagcgttggcggggtctgagcgcggatcgaagccc 559 Query: 524 cnaaagttgaactgccangcgcangggcgnnnnnnngtgcccctggcagggagtgcgccg 583 | ||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| Sbjct: 558 cgaaagttgaactgccaggcgcaggggcgcccccccgtgcccctggccgggagtgcgccg 499
>ref|XM_507586.1| PREDICTED Oryza sativa (japonica cultivar-group), P0524F03.33 mRNA Length = 1259 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1027 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 968 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 967 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 908 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 907 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 848 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 847 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 788 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 787 cgggaagtagattc 774 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 693 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 634 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 633 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 578
>ref|XM_482612.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1199 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1118 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 1059 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 1058 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 999 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 998 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 939 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 938 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 879 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 878 cgggaagtagattc 865 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 784 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 725 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 724 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 669
>ref|XM_507242.2| PREDICTED Oryza sativa (japonica cultivar-group), P0524F03.33 mRNA Length = 1222 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1138 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 1079 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 1078 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 1019 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 1018 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 959 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 958 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 899 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 898 cgggaagtagattc 885 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 804 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 745 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 744 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 689
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 21412644 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 21412585 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 21412584 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 21412525 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 21412524 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 21412465 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 21412464 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 21412405 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 21412404 cgggaagtagattc 21412391 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 21412310 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 21412251 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 21412250 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 21412195
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0528B09 Length = 156897 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 16639 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 16580 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 16579 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 16520 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 16519 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 16460 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 16459 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 16400 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 16399 cgggaagtagattc 16386 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 16305 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 16246 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 16245 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 16190
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 112569 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 112510 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 112509 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 112450 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 112449 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 112390 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 112389 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 112330 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 112329 cgggaagtagattc 112316 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 112235 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 112176 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 112175 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 112120
>dbj|AK109485.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H04, full insert sequence Length = 1198 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1117 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 1058 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 1057 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 998 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 997 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 938 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 937 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 878 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 877 cgggaagtagattc 864 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 783 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 724 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 723 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 668
>dbj|AK107167.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F10, full insert sequence Length = 1468 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 261 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 202 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 201 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 142 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 141 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 82 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 81 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 22 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 21 cgggaagtagattc 8
>dbj|AK105990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G12, full insert sequence Length = 1257 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1025 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 966 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 965 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 906 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 905 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 846 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 845 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 786 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 785 cgggaagtagattc 772 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 691 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 632 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 631 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 576
>dbj|AK103781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145G16, full insert sequence Length = 1224 Score = 157 bits (79), Expect = 5e-35 Identities = 209/254 (82%) Strand = Plus / Minus Query: 91 tggtggtctgttctccccaccatcagaaataagaccatacaacacaccggcataattctc 150 ||||||||||||| ||||| | ||| || ||| ||||||||||||||||||| ||||| Sbjct: 1140 tggtggtctgttcaccccatcctcaataacaagcccatacaacacaccggcatgcttctc 1081 Query: 151 ggtcgatcctctgaaatacacctccttcagctttttgaagcactgnaaggtcagcagtga 210 |||||||||| |||| ||||||||||| | ||| ||| ||||| | ||||| ||| || Sbjct: 1080 ggtcgatcctttgaagtacacctccttgatcttgttgtagcacccgagggtcaacagcga 1021 Query: 211 ntttgacccagcctggtggcagatccccacacgttggacannangtagctcaccaagctt 270 | || || |||||||||||| |||||||||| | |||| | | |||||||| ||| | Sbjct: 1020 gtcagagccggcctggtggcaggtccccacacgcttgacatcaagaagctcaccgagcct 961 Query: 271 gctcaagccaccatggaggctgccgcagtacttcatgagatgcttgatgtcgtacagtac 330 ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||| || || Sbjct: 960 gctcaggccgccgtggaggttgctgcagaacctcatgaggtgcttgatgtcgtagagcac 901 Query: 331 cgggaagtagattc 344 |||||||||||||| Sbjct: 900 cgggaagtagattc 887 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 344 ccgctgtgaaatgtgacccactggacctcagcgttgagcaggacgccggacgacatgagc 403 |||||||| || |||| |||||| || || |||||||||| |||||| |||||||||||| Sbjct: 806 ccgctgtggaaggtgatccactgcacgtcggcgttgagcacgacgcccgacgacatgagc 747 Query: 404 agctcggcgaagtggcccgtgtcagcaccctcggtggtgaagcggtcgaagtcgat 459 |||||||||||| || || ||| || ||||| | || ||| || ||||||||||| Sbjct: 746 agctcggcgaagcggatcgggtcggccccctcagcggcgaaccgatcgaagtcgat 691
>gb|AY112022.1| Zea mays CL704_1 mRNA sequence Length = 1244 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 255 gtagctcaccaagcttgctcaagccaccatggaggctgccgcagtacttcatgagatgct 314 |||||||| |||||||| ||| ||||| || |||||| |||| ||||||||||||||| Sbjct: 788 gtagctcagcaagcttgttcagtccaccgtgcaggctgttgcagaacttcatgagatgct 729 Query: 315 tgatgtcgtaca 326 ||||||| |||| Sbjct: 728 tgatgtcataca 717 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 377 ttgagcaggacgccggacgacatgagcagctcggcgaag 415 ||||||| ||||||||| |||||||| |||||||||||| Sbjct: 585 ttgagcacgacgccggaagacatgaggagctcggcgaag 547
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 121 aagaccatacaacacaccggcataattctcggt 153 |||||||||||||||||||||||| |||||||| Sbjct: 14875542 aagaccatacaacacaccggcatacttctcggt 14875510
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 121 aagaccatacaacacaccggcataattctcggt 153 |||||||||||||||||||||||| |||||||| Sbjct: 160931 aagaccatacaacacaccggcatacttctcggt 160899
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 121 aagaccatacaacacaccggcataattctcggt 153 |||||||||||||||||||||||| |||||||| Sbjct: 83881 aagaccatacaacacaccggcatacttctcggt 83849
>dbj|AK099984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L05, full insert sequence Length = 1114 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 121 aagaccatacaacacaccggcataattctcggt 153 |||||||||||||||||||||||| |||||||| Sbjct: 1038 aagaccatacaacacaccggcatacttctcggt 1006
>dbj|AK065377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021M02, full insert sequence Length = 3225 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 121 aagaccatacaacacaccggcataattctcggt 153 |||||||||||||||||||||||| |||||||| Sbjct: 1021 aagaccatacaacacaccggcatacttctcggt 989
>gb|BT017748.1| Zea mays clone EL01N0450A11.c mRNA sequence Length = 1240 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 300 acttcatgagatgcttgatgtcgtaca 326 ||||||||||||||||||||||||||| Sbjct: 904 acttcatgagatgcttgatgtcgtaca 878 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 359 acccactggacctcagcgttgagcaggacgccggacgacatgagcagctcggcgaag 415 ||||||||||| || |||| |||| ||| ||||||||||| | ||||||||||||| Sbjct: 764 acccactggacatcgtcgttcagcacgactccggacgacatcatcagctcggcgaag 708 Score = 44.1 bits (22), Expect = 0.52 Identities = 65/80 (81%) Strand = Plus / Minus Query: 164 aaatacacctccttcagctttttgaagcactgnaaggtcagcagtgantttgacccagcc 223 ||||||| || ||| ||||| |||||||||| | ||||||||| || | | |||||| Sbjct: 1043 aaatacaactgcttgagcttcatgaagcactgcagggtcagcagcgaatcaaatccagcc 984 Query: 224 tggtggcagatccccacacg 243 ||||||| |||||| ||||| Sbjct: 983 tggtggctgatcccaacacg 964
>gb|AY109688.1| Zea mays CL339_1 mRNA sequence Length = 1928 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 300 acttcatgagatgcttgatgtcgtaca 326 ||||||||||||||||||||||||||| Sbjct: 897 acttcatgagatgcttgatgtcgtaca 871 Score = 52.0 bits (26), Expect = 0.002 Identities = 66/80 (82%) Strand = Plus / Minus Query: 164 aaatacacctccttcagctttttgaagcactgnaaggtcagcagtgantttgacccagcc 223 ||||||| || ||| ||||| |||||||||| | ||||||||| || | || |||||| Sbjct: 1036 aaatacaactgcttgagcttcatgaagcactgcagggtcagcagcgaatcagatccagcc 977 Query: 224 tggtggcagatccccacacg 243 ||||||| |||||| ||||| Sbjct: 976 tggtggctgatcccaacacg 957 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 359 acccactggacctcagcgttgagcaggacgccggacgacatgagcagctcggcgaag 415 ||||||||||| || |||| |||| ||| ||||||||||| | ||||||||||||| Sbjct: 757 acccactggacatcgtcgttcagcacgactccggacgacatcatcagctcggcgaag 701
>gb|BT009163.1| Triticum aestivum clone wl1n.pk0094.h5:fis, full insert mRNA sequence Length = 739 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 300 acttcatgagatgcttgatgtcgtaca 326 |||||||||||||||||| |||||||| Sbjct: 398 acttcatgagatgcttgacgtcgtaca 372
>emb|AL049775.2|CNS00006 Human chromosome 14 DNA sequence BAC R-497E19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181433 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 gtctgttctccccaccatcag 116 ||||||||||||||||||||| Sbjct: 109160 gtctgttctccccaccatcag 109180
>ref|XM_468264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1094 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 787 gcagaacttcatgaggtgcttgatgtcataca 756 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 626 cgttaagcacgacgccagaggacatgagcagctccgcgaa 587
>ref|XM_507027.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1695_H09.27-1 mRNA Length = 1415 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 794 gcagaacttcatgaggtgcttgatgtcataca 763 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 633 cgttaagcacgacgccagaggacatgagcagctccgcgaa 594
>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the 3' end of the CIAS1 gene for cold autoinflammatory syndrome 1, the gene for a novel 7 transmembrane receptor (rhodopsin family) protein, a 7 transmembrane receptor (rhodopsin family) pseudogene, two novel genes (LOC148823, LOC148824), the OR2C3 gene for olfactory receptor family 2 subfamily C member 3, the 3' end of a novel gene, the OR2G2 for olfactory receptor family 2 subfamily G member 2, the OR2G3 for olfactory receptor family 2 subfamily G member 3, the gene for a novel protein similar to Olfactory receptor 5AV1 (LOC127617) and three CpG islands, complete sequence Length = 185467 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atcagaaataagaccataca 131 |||||||||||||||||||| Sbjct: 66782 atcagaaataagaccataca 66763
>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains the 5' end of the ID1 gene for inhibitor of DNA binding 1, dominant negative helix-loop-helix protein, two novel genes, the 3' end of the HM13 gene for histocompatibility (minor) 13 an MCT-1 (multiple copies in a T-cell malignancies) pseudogene and five CpG islands, complete sequence Length = 79419 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ttgacccagcctggtggcag 232 |||||||||||||||||||| Sbjct: 17834 ttgacccagcctggtggcag 17815
>emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment 18/24 Length = 283050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 cggtcgaagtcgatcccact 465 |||||||||||||||||||| Sbjct: 112072 cggtcgaagtcgatcccact 112091
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 33873522 gcagaacttcatgaggtgcttgatgtcataca 33873491 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 33873361 cgttaagcacgacgccagaggacatgagcagctccgcgaa 33873322
>gb|AC007690.12| Homo sapiens 3 BAC RP11-42D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181531 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atattcaacagtaaatattt 23 |||||||||||||||||||| Sbjct: 95829 atattcaacagtaaatattt 95848
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gagcagctcggcgaagtggc 419 |||||||||||||||||||| Sbjct: 4361313 gagcagctcggcgaagtggc 4361294
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 90100 gcagaacttcatgaggtgcttgatgtcataca 90069 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 89939 cgttaagcacgacgccagaggacatgagcagctccgcgaa 89900
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 32485 gcagaacttcatgaggtgcttgatgtcataca 32454 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 32324 cgttaagcacgacgccagaggacatgagcagctccgcgaa 32285
>dbj|AK119386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B12, full insert sequence Length = 2885 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 867 gcagaacttcatgaggtgcttgatgtcataca 836 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 706 cgttaagcacgacgccagaggacatgagcagctccgcgaa 667
>ref|XM_311674.2| Anopheles gambiae str. PEST ENSANGP00000014929 (ENSANGG00000012440), partial mRNA Length = 2226 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 gccggacgacatgagcagctcggc 411 |||||||||| ||||||||||||| Sbjct: 636 gccggacgacttgagcagctcggc 613
>ref|XM_558841.1| Anopheles gambiae str. PEST ENSANGP00000029454 (ENSANGG00000012440), partial mRNA Length = 2658 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 gccggacgacatgagcagctcggc 411 |||||||||| ||||||||||||| Sbjct: 585 gccggacgacttgagcagctcggc 562
>gb|AF105199.1|AF105199 Glycine max glutathione reductase (GR-5) gene, complete cds Length = 7366 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tggtgaagcggtcgaagtcg 457 |||||||||||||||||||| Sbjct: 1894 tggtgaagcggtcgaagtcg 1875
>dbj|AK073025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149N08, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 295 gcagtacttcatgagatgcttgatgtcgtaca 326 |||| |||||||||| ||||||||||| |||| Sbjct: 794 gcagaacttcatgaggtgcttgatgtcataca 763 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 633 cgttaagcacgacgccagaggacatgagcagctccgcgaa 594
>dbj|AK061820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B10, full insert sequence Length = 1094 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 cgttgagcaggacgccggacgacatgagcagctcggcgaa 414 |||| |||| |||||| || |||||||||||||| ||||| Sbjct: 626 cgttaagcacgacgccagaggacatgagcagctccgcgaa 587
>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete sequence Length = 61795 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 agccaccatggaggctgccg 295 |||||||||||||||||||| Sbjct: 38155 agccaccatggaggctgccg 38136
>dbj|AP006419.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT43O18, TM0307, complete sequence Length = 119858 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ttatttgactatccattactcatt 74 |||||||||||| ||||||||||| Sbjct: 90804 ttatttgactattcattactcatt 90827 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,359,108 Number of Sequences: 3902068 Number of extensions: 3359108 Number of successful extensions: 60294 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60077 Number of HSP's gapped (non-prelim): 206 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
