ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26o23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 214 5e-53
2emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 208 3e-51
3emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 208 3e-51
4gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 206 1e-50
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 200 7e-49
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 74 1e-10
7emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.024
8gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 46 0.024
9ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.095
10gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.095
11gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.095
12dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.095
13dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.095
14dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.095
15dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.095
16emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.38
17gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.38
18gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 1.5
19ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 1.5
20emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 1.5
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
23emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 1.5
24dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
25gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.5
26emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 1.5
27emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 1.5
28gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, compl... 38 5.9
29gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome... 38 5.9
30gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome... 38 5.9
31gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, co... 38 5.9
32gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 38 5.9
33gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 38 5.9
34gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosom... 38 5.9
35gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosom... 38 5.9
36gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, comp... 38 5.9
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 5.9
38gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosom... 38 5.9
39gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, co... 38 5.9
40gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosom... 38 5.9
41gb|AC122887.2| Mus musculus BAC clone RP23-91L6 from 10, complet... 38 5.9
42emb|BX005132.9| Human DNA sequence from clone RP4-603B14 on chro... 38 5.9
43emb|AL451074.13| Human DNA sequence from clone RP11-466F5 on chr... 38 5.9
44emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 38 5.9
45gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 38 5.9
46gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome... 38 5.9
47gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complet... 38 5.9
48gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 38 5.9
49gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h... 38 5.9
50dbj|AK037008.1| Mus musculus adult female vagina cDNA, RIKEN ful... 38 5.9
51dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
53gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, comp... 38 5.9
54emb|BX813738.1|CNS0AC3X Arabidopsis thaliana Full-length cDNA Co... 38 5.9
55gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome... 38 5.9
56dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
57dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
58gb|AC004817.2|AC004817 Homo sapiens PAC clone RP6-91H8 from 14q2... 38 5.9
59gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 38 5.9
60gb|AY656839.1| Leishmania donovani chagasi genomic sequence 38 5.9
61gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, comple... 38 5.9
62gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 38 5.9
63emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 38 5.9
64dbj|AP006642.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 5.9
65emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on ch... 38 5.9
66gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, compl... 38 5.9 
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  214 bits (108), Expect = 5e-53
 Identities = 117/121 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtacatgaacatggacatacacatantcttaggaacaaataaganagataaatgga 60
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 631 gttggtacatgaacatggacatacacatattcttaggaacaaataagaaagataaatgga 572

                                                                       
Query: 61  gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttntatgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 571 gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatatggc 512

            
Query: 121 c 121
           |
Sbjct: 511 c 511
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  208 bits (105), Expect = 3e-51
 Identities = 109/111 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtacatgaacatggacatacacatantcttaggaacaaataaganagataaatgga 60
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 712 gttggtacatgaacatggacatacacatattcttaggaacaaataagaaagataaatgga 653

                                                              
Query: 61  gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 602
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  208 bits (105), Expect = 3e-51
 Identities = 117/122 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtacatgaacatggacatacacatantcttaggaacaaataaganagataaatgga 60
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 752 gttggtacatgaacatggacatacacatattcttaggaacaaataagaaagataaatgga 693

                                                                       
Query: 61  gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttntatgtggc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 692 caaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgcggc 633

             
Query: 121 cc 122
           ||
Sbjct: 632 cc 631
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  206 bits (104), Expect = 1e-50
 Identities = 113/117 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gtacatgaacatggacatacacatantcttaggaacaaataaganagataaatggagaag 64
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 201 gtacatgaacatggacatacacatattcttaggaacaaataagaaagataaatggagaag 142

                                                                    
Query: 65  gaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttntatgtggcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 141 gaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatatggcc 85
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  200 bits (101), Expect = 7e-49
 Identities = 116/122 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtacatgaacatggacatacacatantcttaggaacaaataaganagataaatgga 60
           |||| |||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||
Sbjct: 480 gttgttacatgaacatggacatacacatattcttaggaacaagtaagaaagacaaatgga 421

                                                                       
Query: 61  gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttntatgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 420 gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgtggc 361

             
Query: 121 cc 122
           ||
Sbjct: 360 cc 359
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 97/110 (88%), Gaps = 7/110 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtacatgaacatggacatacacatantcttaggaacaaataaganagataaatgga 60
           ||||||||||||||||||   |||||| | | |||||||| ||||||| |||| ||||||
Sbjct: 677 gttggtacatgaacatgggactacacacatt-ttaggaac-aataagaaagat-aatgga 621

                                                             
Query: 61  gaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactt 110
           |||||||||||  |||| |||||||||||||| |||||||||||||||||
Sbjct: 620 gaaggaaaacc--aagc-atgtcagagttgac-aaactgcaatggcactt 575
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.024
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 5      gtacatgaacatggacatacaca 27
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
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>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 46.1 bits (23), Expect = 0.024
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 40    caaataaganagataaatggagaaggaaaa 69
             ||||||||| ||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
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>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
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>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
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>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
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>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 66  aaaacccaaagcaatgtcagagttgacaaa 95
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     agcaatgtcagagttgacaaa 95
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
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>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    atgaacatggacatacacata 29
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 67      aaacccaaagcaatgtcaga 86
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
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>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
          (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 67 aaacccaaagcaatgtcaga 86
          ||||||||||||||||||||
Sbjct: 80 aaacccaaagcaatgtcaga 99
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>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    cagagttgacaaaactgcaatggc 106
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      gataaatggagaaggaaaac 70
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      agaaggaaaacccaaagcaa 79
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gataaatggagaaggaaaac 70
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    agaaggaaaacccaaagcaa 79
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      gataaatggagaaggaaaac 70
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     gataaatggagaaggaaaac 70
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     atgaacatggacatacacat 28
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
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>gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, complete sequence
          Length = 229200

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     acatgaacatggacataca 25
             |||||||||||||||||||
Sbjct: 50812 acatgaacatggacataca 50794
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>gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome 12, complete sequence
          Length = 206083

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    aaacccaaagcaatgtcag 85
             |||||||||||||||||||
Sbjct: 42496 aaacccaaagcaatgtcag 42478
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>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence
          Length = 239046

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      acatgaacatggacatacacata 29
              ||||||||||||||| |||||||
Sbjct: 206760 acatgaacatggacacacacata 206738
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>gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, complete sequence
          Length = 171161

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      acatgaacatggacatacacata 29
              |||||||||||||||| ||||||
Sbjct: 118045 acatgaacatggacatgcacata 118023
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 7    acatgaacatggacatacacata 29
            ||||||||||| |||||||||||
Sbjct: 4895 acatgaacatgaacatacacata 4873
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      acatgaacatggacatacacata 29
              ||||||||||| |||||||||||
Sbjct: 123589 acatgaacatgaacatacacata 123567
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>gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosome 1, complete sequence
          Length = 241735

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     acatgaacatggacataca 25
             |||||||||||||||||||
Sbjct: 94634 acatgaacatggacataca 94616
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>gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosome 1, complete sequence
          Length = 169725

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      acatgaacatggacataca 25
              |||||||||||||||||||
Sbjct: 163803 acatgaacatggacataca 163785



 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     acatgaacatggacataca 25
             |||||||||||||||||||
Sbjct: 33280 acatgaacatggacataca 33298
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>gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, complete sequence
          Length = 142689

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      acatgaacatggacataca 25
              |||||||||||||||||||
Sbjct: 126063 acatgaacatggacataca 126081
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 7        acatgaacatggacatacacata 29
                ||||||||||| |||||||||||
Sbjct: 24888607 acatgaacatgaacatacacata 24888585
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>gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosome 12, complete
             sequence
          Length = 167106

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     acatgaacatggacatacacata 29
             ||||||||||||||| |||||||
Sbjct: 33283 acatgaacatggacacacacata 33261
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>gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, complete sequence
          Length = 271253

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 7      acatgaacatggacatacacata 29
              |||||||||||||||| ||||||
Sbjct: 211558 acatgaacatggacatgcacata 211580
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>gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosome 13, complete sequence
          Length = 193553

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     ataaatggagaaggaaaac 70
              |||||||||||||||||||
Sbjct: 109333 ataaatggagaaggaaaac 109351
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>gb|AC122887.2| Mus musculus BAC clone RP23-91L6 from 10, complete sequence
          Length = 186103

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     agataaatggagaaggaaa 68
              |||||||||||||||||||
Sbjct: 116629 agataaatggagaaggaaa 116647
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>emb|BX005132.9| Human DNA sequence from clone RP4-603B14 on chromosome 1, complete
             sequence
          Length = 51253

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    caaagcaatgtcagagttg 90
             |||||||||||||||||||
Sbjct: 42694 caaagcaatgtcagagttg 42676
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>emb|AL451074.13| Human DNA sequence from clone RP11-466F5 on chromosome 1 Contains the 3'
              end of the MGST3 gene for microsomal glutathione
              S-transferase 3, the ALDH9A1 gene for aldehyde
              dehydrogenase 9 family (member A1), a ribosomal protein S13
              (RPS13) pseudogene, a ribosomal protein L21 (RPL21)
              pseudogene, two novel genes (FLJ42974), a carbonic
              anhydrase XIV (CA14) pseudogene, the gene for putative
              membrane protein (LOC54499), a ribosomal protein L26
              (RPL26) pseudogene, the 5' end of (tbc), the 5' end of the
              UMPK gene for uridine monophosphate kinase and two CpG
              islands, complete sequence
          Length = 188217

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     aatgtcagagttgacaaaa 96
              |||||||||||||||||||
Sbjct: 115566 aatgtcagagttgacaaaa 115584
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>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 93     aaaactgcaatggcacttt 111
              |||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttt 166576
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>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     agataaatggagaaggaaa 68
              |||||||||||||||||||
Sbjct: 190876 agataaatggagaaggaaa 190894
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>gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome 12, complete sequence
          Length = 175123

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 62    aaggaaaacccaaagcaatgtca 84
             |||||||||||||||||| ||||
Sbjct: 99058 aaggaaaacccaaagcaaagtca 99036
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>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence
          Length = 132337

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 7    acatgaacatggacataca 25
            |||||||||||||||||||
Sbjct: 3661 acatgaacatggacataca 3679
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence
          Length = 205862

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      acatgaacatggacatacacata 29
              ||||||||||| |||||||||||
Sbjct: 118982 acatgaacatgcacatacacata 118960
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>gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h In DGCR Region,
             complete sequence
          Length = 40645

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aaggaaaacccaaagcaat 80
             |||||||||||||||||||
Sbjct: 17806 aaggaaaacccaaagcaat 17824
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>dbj|AK037008.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930036K04 product:unclassifiable, full
            insert sequence
          Length = 3845

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   agataaatggagaaggaaa 68
            |||||||||||||||||||
Sbjct: 2909 agataaatggagaaggaaa 2927
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 7        acatgaacatggacatacacata 29
                ||||||||||| |||||||||||
Sbjct: 11682609 acatgaacatgaacatacacata 11682587



 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 7        acatgaacatggacatacacata 29
                ||||||||||| |||||||||||
Sbjct: 10428734 acatgaacatgaacatacacata 10428756
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 7        acatgaacatggacatacacata 29
                ||||||||||| |||||||||||
Sbjct: 24979677 acatgaacatgaacatacacata 24979655
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>gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, complete sequence
          Length = 185457

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     gataaatggagaaggaaaa 69
              |||||||||||||||||||
Sbjct: 127180 gataaatggagaaggaaaa 127162
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>emb|BX813738.1|CNS0AC3X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZD07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1401

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 5   gtacatgaacatggacata 23
           |||||||||||||||||||
Sbjct: 329 gtacatgaacatggacata 311
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>gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome 8, complete sequence
          Length = 229472

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     acatgaacatggacataca 25
             |||||||||||||||||||
Sbjct: 64791 acatgaacatggacataca 64809
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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 7    acatgaacatggacatacacata 29
            ||||||||||| |||||||||||
Sbjct: 5348 acatgaacatgaacatacacata 5370
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     acatgaacatggacatacacata 29
             ||||||||||| |||||||||||
Sbjct: 31151 acatgaacatgaacatacacata 31129
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>gb|AC004817.2|AC004817 Homo sapiens PAC clone RP6-91H8 from 14q24.3, complete sequence
          Length = 128398

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 38     aacaaataaganagataaatggagaa 63
              |||||| |||| ||||||||||||||
Sbjct: 124197 aacaaaaaagatagataaatggagaa 124222
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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     agataaatggagaaggaaa 68
              |||||||||||||||||||
Sbjct: 104568 agataaatggagaaggaaa 104586
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>gb|AY656839.1| Leishmania donovani chagasi genomic sequence
          Length = 31876

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 57  tggagaaggaaaacccaaagcaa 79
           |||||||||||||| ||||||||
Sbjct: 899 tggagaaggaaaacgcaaagcaa 877
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>gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, complete sequence
          Length = 183380

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     aaacccaaagcaatgtcag 85
              |||||||||||||||||||
Sbjct: 179292 aaacccaaagcaatgtcag 179274
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>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     acatgaacatggacataca 25
             |||||||||||||||||||
Sbjct: 55429 acatgaacatggacataca 55447
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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
              sequence
          Length = 216239

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     ataaatggagaaggaaaac 70
              |||||||||||||||||||
Sbjct: 188889 ataaatggagaaggaaaac 188871
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>dbj|AP006642.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34I09, TM0246c,
             complete sequence
          Length = 52880

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    aaatggagaaggaaaaccc 72
             |||||||||||||||||||
Sbjct: 46427 aaatggagaaggaaaaccc 46409
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>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete
              sequence
          Length = 198761

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      acatgaacatggacatacacata 29
              ||||||||||| |||||||||||
Sbjct: 169388 acatgaacatgcacatacacata 169366
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>gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, complete sequence
          Length = 250160

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      acatgaacatggacataca 25
              |||||||||||||||||||
Sbjct: 204453 acatgaacatggacataca 204435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,341,930
Number of Sequences: 3902068
Number of extensions: 1341930
Number of successful extensions: 88694
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88445
Number of HSP's gapped (non-prelim): 247
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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