ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27d23 |
|---|---|
| Clone Library Name | barley_pub |
>IF37_ARATH (P56820) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3d) (p66) Length = 591 Score = 194 bits (494), Expect = 1e-49 Identities = 88/113 (77%), Positives = 104/113 (92%) Frame = -2 Query: 552 QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 373 QALL+ ADMMK+G+VSRVHPRDHFNH IL+V+GYKP+DFA QINLNT+NMWGIVKSIVD+ Sbjct: 457 QALLANADMMKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDL 516 Query: 372 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQVRPATDDVD 214 CMK EGKYVLVKDP+KPQ+RIY+VP DAFENDYVEEPLPE+EQV+P ++ + Sbjct: 517 CMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEENTE 569
>IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3 p66) (eIF3d) Length = 548 Score = 117 bits (292), Expect = 3e-26 Identities = 52/103 (50%), Positives = 74/103 (71%) Frame = -2 Query: 549 ALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDIC 370 ALL+G++ +KLGYVSR H +D H IL +KP +FA+QINL+ N WGI++ ++DIC Sbjct: 439 ALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDIC 498 Query: 369 MKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQ 241 MK EEGKY+++KDP K +R+Y +P+ F +D EE EEE+ Sbjct: 499 MKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEEE 541
>IF37_MOUSE (O70194) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3 p66) (eIF3d) Length = 547 Score = 115 bits (288), Expect = 8e-26 Identities = 51/103 (49%), Positives = 74/103 (71%) Frame = -2 Query: 549 ALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDIC 370 ALL+G++ +KLGYVSR H +D H IL +KP +FA+QINL+ N WGI++ ++DIC Sbjct: 438 ALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDIC 497 Query: 369 MKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQ 241 MK EEGKY+++KDP K +R+Y +P+ F ++ EE EEE+ Sbjct: 498 MKLEEGKYLILKDPNKQVIRVYSLPDGTFSSEEDEEDEEEEEE 540
>IF37_SCHPO (O94236) Eukaryotic translation initiation factor 3 subunit 7| homolog (Microtubule-destabilizing protein moe1) Length = 567 Score = 112 bits (279), Expect = 9e-25 Identities = 50/91 (54%), Positives = 70/91 (76%) Frame = -2 Query: 552 QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 373 +ALL+G D MK+G+VSR + RD +H IL V+ YKP D A+Q+NL+ +N WGIV++I D+ Sbjct: 464 EALLAGVDSMKVGFVSRSNARDAQHHGILGVVAYKPADLASQMNLSLSNGWGIVRTIADV 523 Query: 372 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFE 280 C+K +GKYVLVKDP +P +R+Y VP + FE Sbjct: 524 CLKMPDGKYVLVKDPNRPILRLYSVPPNTFE 554
>IF37_CAEEL (P30642) Putative eukaryotic translation initiation factor 3| subunit 7 (eIF-3 zeta) (eIF3d) Length = 570 Score = 103 bits (257), Expect = 3e-22 Identities = 48/93 (51%), Positives = 65/93 (69%) Frame = -2 Query: 552 QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 373 QALL+G+D MKLGYVSR + R NHSIL KP +FA+ I LN N WGI++ ++D Sbjct: 465 QALLAGSDTMKLGYVSRNNARSTQNHSILLTQYVKPTEFASNIALNMDNCWGILRCVIDS 524 Query: 372 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFEND 274 CMK + GKY+L+KDP P +R+Y +P FE++ Sbjct: 525 CMKQKPGKYLLMKDPQSPVIRLYSLPEGTFESE 557
>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 702 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/57 (33%), Positives = 23/57 (40%) Frame = -1 Query: 538 WRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 368 W+ +DE CV+C PL+ HC Q C HC V NC H H Sbjct: 422 WK-YDETNFCVTCMIQTPLR--SKHCRRCQR---CVAKHDHHCPWVYNCVGINNHRH 472
>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 486 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/48 (33%), Positives = 18/48 (37%) Frame = -1 Query: 535 RGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNC 392 RG + C C P+P P HC C P HC GNC Sbjct: 96 RGPQKAKWCKKCDAPKP--PRAHHCRHCAR---CIPRMDHHCPWTGNC 138
>ZDH13_MOUSE (Q9CWU2) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 13) (DHHC-13) (Huntingtin-interacting protein 14-related protein) (HIP14-related protein) Length = 622 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/50 (34%), Positives = 20/50 (40%) Frame = -1 Query: 511 CVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMHEV 362 C SC +PL+ LH H RF QHC G C H H + Sbjct: 428 CTSCLIRKPLRSLHCHVCNSCVARF-----DQHCFWTGRCIGFGNHHHYI 472
>AKR1_NEUCR (Q7S3M5) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 729 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -1 Query: 544 TIWRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 368 ++W+ DE CV+C PL+ HC Q C HC V NC H H Sbjct: 432 SLWK-FDESNFCVTCMIRTPLR--SKHCRRCQR---CVAKHDHHCPWVYNCIGVNNHRH 484
>AKR1_ASPOR (Q7Z8U2) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein akr1) Length = 737 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = -1 Query: 547 FTIWRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNC 392 F W+ DE CVSC RPL+ HC C HC + NC Sbjct: 446 FEQWK-FDEENFCVSCMVRRPLR--SKHCKRCAR---CVAKHDHHCPWIDNC 491
>MUC13_RAT (P97881) Mucin-13 precursor| Length = 547 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -3 Query: 497 TPATTSTTPYSLSWATSQEILLPRSTSTLQT 405 TP TT+T P S S+ T LP STST T Sbjct: 91 TPTTTATQPTSTSFQTPGTTQLPSSTSTPTT 121
>ZDH13_PONPY (Q5NVB9) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 13) (DHHC-13) Length = 622 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -1 Query: 511 CVSCAPPRPLQPLHTH-CHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 368 C SC +PL+ LH H C+ C QHC G C + G+ H Sbjct: 428 CTSCLIRKPLRSLHCHVCNS------CVARYDQHCLWTGRC-IGFGNHH 469
>ZDH13_MACFA (Q4R690) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 13) (DHHC-13) Length = 622 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -1 Query: 511 CVSCAPPRPLQPLHTH-CHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 368 C SC +PL+ LH H C+ C QHC G C + G+ H Sbjct: 428 CTSCLIRKPLRSLHCHVCNS------CVARYDQHCLWTGRC-IGFGNHH 469
>K0195_HUMAN (Q12767) Protein KIAA0195 (Transmembrane protein 94)| Length = 1356 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/98 (23%), Positives = 40/98 (40%) Frame = +1 Query: 247 LLWKWLFNIIVLKRIIRNLIDPHLWLGRIFHKHILALFKLHAYVHNRLDNSPHVCSVEVD 426 L W +++L ++++ +D LW R H VH L++ P Sbjct: 1267 LWWAVTVPVVLLGQVVQTAVDLQLWTHRDSH------------VHFGLEDVP-------- 1306 Query: 427 LGSKISWLVAHDSEYGVVEVVAGVHTRHITQLHHVRAR 540 ++WL+ G + +V V T I +LH +R R Sbjct: 1307 ---LLTWLL------GCLSLVLVVVTNEIVKLHEIRVR 1335
>JAK2_RAT (Q62689) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase| 2) (JAK-2) Length = 1132 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 514 LCVSCAPPRPLQPLHTHCHG 455 LC APP L+ +H++CHG Sbjct: 383 LCKEVAPPAVLENIHSNCHG 402
>ZDH13_HUMAN (Q8IUH4) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 13) (DHHC-13) (Huntingtin-interacting protein 14-related protein) (HIP14-related protein) (Huntingtin-interacting protein HIP3RP) (Putativ Length = 622 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -1 Query: 511 CVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 368 C SC +PL+ LH H C QHC G C + G+ H Sbjct: 428 CTSCLIRKPLRSLHCH-----VCNCCVARYDQHCLWTGRC-IGFGNHH 469
>JAK2_MOUSE (Q62120) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase| 2) (JAK-2) Length = 1129 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 514 LCVSCAPPRPLQPLHTHCHG 455 LC APP L+ +H++CHG Sbjct: 383 LCKEVAPPAVLENIHSNCHG 402
>ENGC_ERWCT (Q6D036) Probable GTPase engC (EC 3.6.1.-)| Length = 349 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +1 Query: 346 ILALFKLHAYVHNRLDNSPHVCSVEVDL-----GSKISWLVAHDSEYGVVEVVAGVHTRH 510 I++ F +HA V D C++ + G ++ W H+S G+ +V VH RH Sbjct: 44 IISRFGMHADVE-ATDGVVRRCNIRRTISSLVTGDRVVWRPGHESLAGISGIVEAVHPRH 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,709,933 Number of Sequences: 219361 Number of extensions: 1370211 Number of successful extensions: 4285 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4283 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
