Clone Name | rbasd27d23 |
---|---|
Clone Library Name | barley_pub |
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 357 bits (180), Expect = 2e-95 Identities = 330/380 (86%) Strand = Plus / Plus Query: 173 gcctctgcctcagcagcagcatccatctcctgtgcagtagcatcgacatcatctgtagcc 232 ||||| ||||| || || |||||||| |||| || |||||||| |||||||||| | | Sbjct: 62266 gcctcagcctctgccgctgcatccatttcctccgcggtagcatcaacatcatctgatggc 62325 Query: 233 gggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatca 292 || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 62326 ggccgaacctgttcctcctccggaagtggctcttccacatagtcattctcaaatgcatca 62385 Query: 293 ttaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatacttg 352 ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||| Sbjct: 62386 gaaggcacctcatagatcctcacttgtggcttcgctggatcttttacaagcacatacttt 62445 Query: 353 ccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgca 412 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 62446 ccctcctcaaacttcatgcagatgtccacgatcgacttgacaattccccacatgtttgat 62505 Query: 413 gtgttgaggttgatctgggtagcaaaatctcttggcttgtagcccatgacagtgagtatg 472 ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 62506 gtgttgaggttgatctgtgtagcaaaatcccttggcttgtatcccataacagtgagtatg 62565 Query: 473 gagtggttgaagtggtcgcgggggtgcacacgagacacataacccaacttcatcatgtcc 532 | |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 62566 gcatggttgtagtgatcacgggggtgcacacgtgacacatatcccaacttcatcatgtca 62625 Query: 533 gcgccagatagtaaagcctg 552 || |||| || |||||||| Sbjct: 62626 gcaccagcaagcaaagcctg 62645
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 357 bits (180), Expect = 2e-95 Identities = 330/380 (86%) Strand = Plus / Plus Query: 173 gcctctgcctcagcagcagcatccatctcctgtgcagtagcatcgacatcatctgtagcc 232 ||||| ||||| || || |||||||| |||| || |||||||| |||||||||| | | Sbjct: 27982101 gcctcagcctctgccgctgcatccatttcctccgcggtagcatcaacatcatctgatggc 27982160 Query: 233 gggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatca 292 || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 27982161 ggccgaacctgttcctcctccggaagtggctcttccacatagtcattctcaaatgcatca 27982220 Query: 293 ttaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatacttg 352 ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||| Sbjct: 27982221 gaaggcacctcatagatcctcacttgtggcttcgctggatcttttacaagcacatacttt 27982280 Query: 353 ccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgca 412 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 27982281 ccctcctcaaacttcatgcagatgtccacgatcgacttgacaattccccacatgtttgat 27982340 Query: 413 gtgttgaggttgatctgggtagcaaaatctcttggcttgtagcccatgacagtgagtatg 472 ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 27982341 gtgttgaggttgatctgtgtagcaaaatcccttggcttgtatcccataacagtgagtatg 27982400 Query: 473 gagtggttgaagtggtcgcgggggtgcacacgagacacataacccaacttcatcatgtcc 532 | |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 27982401 gcatggttgtagtgatcacgggggtgcacacgtgacacatatcccaacttcatcatgtca 27982460 Query: 533 gcgccagatagtaaagcctg 552 || |||| || |||||||| Sbjct: 27982461 gcaccagcaagcaaagcctg 27982480
>dbj|AK104093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F02, full insert sequence Length = 1968 Score = 357 bits (180), Expect = 2e-95 Identities = 330/380 (86%) Strand = Plus / Minus Query: 173 gcctctgcctcagcagcagcatccatctcctgtgcagtagcatcgacatcatctgtagcc 232 ||||| ||||| || || |||||||| |||| || |||||||| |||||||||| | | Sbjct: 1763 gcctcagcctctgccgctgcatccatttcctccgcggtagcatcaacatcatctgatggc 1704 Query: 233 gggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatca 292 || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1703 ggccgaacctgttcctcctccggaagtggctcttccacatagtcattctcaaatgcatca 1644 Query: 293 ttaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatacttg 352 ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||| Sbjct: 1643 gaaggcacctcatagatcctcacttgtggcttcgctggatcttttacaagcacatacttt 1584 Query: 353 ccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgca 412 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 1583 ccctcctcaaacttcatgcagatgtccacgatcgacttgacaattccccacatgtttgat 1524 Query: 413 gtgttgaggttgatctgggtagcaaaatctcttggcttgtagcccatgacagtgagtatg 472 ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1523 gtgttgaggttgatctgtgtagcaaaatcccttggcttgtatcccataacagtgagtatg 1464 Query: 473 gagtggttgaagtggtcgcgggggtgcacacgagacacataacccaacttcatcatgtcc 532 | |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1463 gcatggttgtagtgatcacgggggtgcacacgtgacacatatcccaacttcatcatgtca 1404 Query: 533 gcgccagatagtaaagcctg 552 || |||| || |||||||| Sbjct: 1403 gcaccagcaagcaaagcctg 1384
>dbj|AK099052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145A19, full insert sequence Length = 2073 Score = 357 bits (180), Expect = 2e-95 Identities = 330/380 (86%) Strand = Plus / Minus Query: 173 gcctctgcctcagcagcagcatccatctcctgtgcagtagcatcgacatcatctgtagcc 232 ||||| ||||| || || |||||||| |||| || |||||||| |||||||||| | | Sbjct: 1774 gcctcagcctctgccgctgcatccatttcctccgcggtagcatcaacatcatctgatggc 1715 Query: 233 gggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatca 292 || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1714 ggccgaacctgttcctcctccggaagtggctcttccacatagtcattctcaaatgcatca 1655 Query: 293 ttaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatacttg 352 ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||| Sbjct: 1654 gaaggcacctcatagatcctcacttgtggcttcgctggatcttttacaagcacatacttt 1595 Query: 353 ccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgca 412 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 1594 ccctcctcaaacttcatgcagatgtccacgatcgacttgacaattccccacatgtttgat 1535 Query: 413 gtgttgaggttgatctgggtagcaaaatctcttggcttgtagcccatgacagtgagtatg 472 ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1534 gtgttgaggttgatctgtgtagcaaaatcccttggcttgtatcccataacagtgagtatg 1475 Query: 473 gagtggttgaagtggtcgcgggggtgcacacgagacacataacccaacttcatcatgtcc 532 | |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1474 gcatggttgtagtgatcacgggggtgcacacgtgacacatatcccaacttcatcatgtca 1415 Query: 533 gcgccagatagtaaagcctg 552 || |||| || |||||||| Sbjct: 1414 gcaccagcaagcaaagcctg 1395
>dbj|AK073468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G07, full insert sequence Length = 2002 Score = 357 bits (180), Expect = 2e-95 Identities = 330/380 (86%) Strand = Plus / Minus Query: 173 gcctctgcctcagcagcagcatccatctcctgtgcagtagcatcgacatcatctgtagcc 232 ||||| ||||| || || |||||||| |||| || |||||||| |||||||||| | | Sbjct: 1802 gcctcagcctctgccgctgcatccatttcctccgcggtagcatcaacatcatctgatggc 1743 Query: 233 gggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatca 292 || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||||| Sbjct: 1742 ggccgaacctgttcctcctccggaagtggctcttccacatagtcattctcaaatgcatca 1683 Query: 293 ttaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatacttg 352 ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||| Sbjct: 1682 gaaggcacctcatagatcctcacttgtggcttcgctggatcttttacaagcacatacttt 1623 Query: 353 ccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgca 412 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 1622 ccctcctcaaacttcatgcagatgtccacgatcgacttgacaattccccacatgtttgat 1563 Query: 413 gtgttgaggttgatctgggtagcaaaatctcttggcttgtagcccatgacagtgagtatg 472 ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1562 gtgttgaggttgatctgtgtagcaaaatcccttggcttgtatcccataacagtgagtatg 1503 Query: 473 gagtggttgaagtggtcgcgggggtgcacacgagacacataacccaacttcatcatgtcc 532 | |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1502 gcatggttgtagtgatcacgggggtgcacacgtgacacatatcccaacttcatcatgtca 1443 Query: 533 gcgccagatagtaaagcctg 552 || |||| || |||||||| Sbjct: 1442 gcaccagcaagcaaagcctg 1423
>gb|AY109827.1| Zea mays CL2592_1 mRNA sequence Length = 889 Score = 248 bits (125), Expect = 2e-62 Identities = 167/181 (92%) Strand = Plus / Plus Query: 232 cgggcgaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatc 291 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 350 cgggcgaacctgctcctcctctggaagtggctcttcaacataatcattctcaaacgcatc 409 Query: 292 attaggaacctgatagatcctcatctgtggcttggcaggatctttcacaagcacatactt 351 | || |||| ||||||||||| ||||||||| || |||||||| |||| ||||||||| Sbjct: 410 agatggtacctcatagatcctcaactgtggctttgctggatctttgacaaacacatactt 469 Query: 352 gccctcttcaaacttcatgcatatgtccacaatcgacttgacaattccccacatgtttgc 411 ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 470 gccctcttcaaacttcatgcagatgtccacaattgacttgacgattccccacatgtttgc 529 Query: 412 a 412 | Sbjct: 530 a 530 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 506 gacacataacccaacttcatcatgtccgcgccagatagtaaagcctg 552 |||||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 624 gacacatagcccaacttcatcatgtcagcaccagcaagcaaagcctg 670
>gb|AY108140.1| Zea mays PCO079824 mRNA sequence Length = 986 Score = 165 bits (83), Expect = 2e-37 Identities = 173/203 (85%) Strand = Plus / Minus Query: 335 ttcacaagcacatacttgccctcttcaaacttcatgcatatgtccacaatcgacttgaca 394 ||||||||||||||||| |||||| ||| ||||||||| | |||||||| ||||| || Sbjct: 472 ttcacaagcacatacttcccctctccaagcttcatgcagacatccacaatagacttcacg 413 Query: 395 attccccacatgtttgcagtgttgaggttgatctgggtagcaaaatctcttggcttgtag 454 || |||||||| ||||| |||||||| |||||||| | ||| ||||| ||||||||||| Sbjct: 412 atcccccacatatttgcggtgttgagattgatctgtgcagcgaaatcccttggcttgtac 353 Query: 455 cccatgacagtgagtatggagtggttgaagtggtcgcgggggtgcacacgagacacataa 514 || || ||| |||| ||||| |||||| | |||||||| ||||||| || ||||||||| Sbjct: 352 ccgatcacactgagaatggaatggttgtactggtcgcgtgggtgcagccgtgacacataa 293 Query: 515 cccaacttcatcatgtccgcgcc 537 ||||||||||||||||| ||||| Sbjct: 292 cccaacttcatcatgtctgcgcc 270
>dbj|AK110353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-H09, full insert sequence Length = 3907 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 173 gcctctgcctcagcagcagcatcca 197 ||||||||||||||||||||||||| Sbjct: 306 gcctctgcctcagcagcagcatcca 282
>gb|BT014594.1| Lycopersicon esculentum clone 134066R, mRNA sequence Length = 2028 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Minus Query: 237 gaacctgctcctcctctggaagtggctcttcaacataatcgttctcaaacgcatc 291 ||||||| || || ||||| | |||||| |||||||| || |||||||||||||| Sbjct: 1724 gaacctgttcatcttctggcaatggctcctcaacatagtcattctcaaacgcatc 1670 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 acataacccaacttcatcat 528 |||||||||||||||||||| Sbjct: 1452 acataacccaacttcatcat 1433
>emb|AL117172.1|CNS01DR0 Botrytis cinerea strain T4 cDNA library Length = 580 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 319 tggcttggcaggatctttcacaagcacatacttgccctcttca 361 ||||||| ||||||||| ||||| || ||||||||||||||| Sbjct: 340 tggcttgttaggatctttgacaagtacgtacttgccctcttca 298
>ref|NM_123799.2| Arabidopsis thaliana translation initiation factor AT5G44320 mRNA, complete cds Length = 2092 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 acaatcgacttgacaattccccacat 405 ||||||||||| |||||||||||||| Sbjct: 1539 acaatcgacttcacaattccccacat 1514
>gb|BT008629.1| Arabidopsis thaliana clone RAFL09-94-B11 (R20081) putative eukaryotic translation initiation factor 3 subunit 7 (At5g44320) mRNA, complete cds Length = 1904 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 acaatcgacttgacaattccccacat 405 ||||||||||| |||||||||||||| Sbjct: 1530 acaatcgacttcacaattccccacat 1505
>gb|BT008551.1| Arabidopsis thaliana clone U20081 putative eukaryotic translation initiation factor 3 subunit 7 (At5g44320) mRNA, complete cds Length = 1798 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 acaatcgacttgacaattccccacat 405 ||||||||||| |||||||||||||| Sbjct: 1526 acaatcgacttcacaattccccacat 1501
>dbj|AB011475.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2 Length = 60583 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 380 acaatcgacttgacaattccccacat 405 ||||||||||| |||||||||||||| Sbjct: 29170 acaatcgacttcacaattccccacat 29195
>gb|AC159381.10| Mus musculus 6 BAC RP24-460E4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 211463 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 agcagcagcatccatctcctg 204 ||||||||||||||||||||| Sbjct: 105518 agcagcagcatccatctcctg 105498
>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence Length = 190266 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 aaaacagatcataaaacagaa 67 ||||||||||||||||||||| Sbjct: 62648 aaaacagatcataaaacagaa 62628
>gb|AC127340.4| Mus musculus BAC clone RP23-188M2 from chromosome 18, complete sequence Length = 210649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cattatctagataaaagcaag 94 ||||||||||||||||||||| Sbjct: 59461 cattatctagataaaagcaag 59441
>gb|AC130545.4| Mus musculus chromosome 18 clone RP24-297E18, complete sequence Length = 156144 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cattatctagataaaagcaag 94 ||||||||||||||||||||| Sbjct: 12713 cattatctagataaaagcaag 12693
>gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, complete sequence Length = 184506 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 122 gcagcatctgcagtcttctcaccgt 146 ||||||||||||||||| ||||||| Sbjct: 72481 gcagcatctgcagtcttatcaccgt 72457
>ref|XM_781128.1| PREDICTED: Strongylocentrotus purpuratus similar to CG16779-PA (LOC581111), mRNA Length = 5388 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gcctctgcctcagcagcagca 193 ||||||||||||||||||||| Sbjct: 3868 gcctctgcctcagcagcagca 3888
>gb|AC090964.10| Papio anubis clone rp41-177g23, complete sequence Length = 182747 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 agcagcagcatccatctcctg 204 ||||||||||||||||||||| Sbjct: 168884 agcagcagcatccatctcctg 168904
>gb|AC002450.1|AC002450 Human BAC clone GS1-244B22 from 7q21-q22, complete sequence Length = 39779 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 aaaacagatcataaaacagaa 67 ||||||||||||||||||||| Sbjct: 22413 aaaacagatcataaaacagaa 22393
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cataaaacagaaaagacacat 76 ||||||||||||||||||||| Sbjct: 1074591 cataaaacagaaaagacacat 1074571
>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence Length = 170634 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 attccccacatgtttgcagtg 415 ||||||||||||||||||||| Sbjct: 4726 attccccacatgtttgcagtg 4706
>ref|NM_186830.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1739 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ggcgaacctgctcctcctct 253 |||||||||||||||||||| Sbjct: 1156 ggcgaacctgctcctcctct 1175
>gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aagaccctgtatcaagacaa 23 |||||||||||||||||||| Sbjct: 23050 aagaccctgtatcaagacaa 23031
>gb|BC072663.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11, mRNA (cDNA clone IMAGE:30543430), partial cds Length = 6149 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 2557 gcctcagcagcagcatccat 2538
>gb|AC148022.2| Homo sapiens BAC clone RP11-1383G16 from 2, complete sequence Length = 181750 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 14295 cctgctcctcctctggaagt 14276
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cctgatagatcctcatctgt 319 |||||||||||||||||||| Sbjct: 1105308 cctgatagatcctcatctgt 1105289
>ref|XM_001005552.1| PREDICTED: Mus musculus similar to Rho guanine nucleotide exchange factor (GEF) 11 (LOC673422), mRNA Length = 1660 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 192 gcctcagcagcagcatccat 173
>gb|AC140413.3| Mus musculus BAC clone RP23-138H4 from chromosome 19, complete sequence Length = 202504 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ctctgcctcagcagcagcat 194 |||||||||||||||||||| Sbjct: 125577 ctctgcctcagcagcagcat 125596
>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete sequence Length = 169912 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cagcagcatccatctcctgt 205 |||||||||||||||||||| Sbjct: 73785 cagcagcatccatctcctgt 73804
>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence Length = 159703 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 134561 gcctcagcagcagcatccat 134580
>emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on chromosome 9 Contains a pseudogene similar to reverse transcriptase proteins, complete sequence Length = 175831 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcatctgcagtcttctcacc 144 |||||||||||||||||||| Sbjct: 92527 gcatctgcagtcttctcacc 92508
>emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chromosome 13 Contains part of the DIAPH3 gene for diaphanous homolog 3 (Drosophila) and a novel gene, complete sequence Length = 209794 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atcaactctttaatcccaaa 48 |||||||||||||||||||| Sbjct: 108895 atcaactctttaatcccaaa 108876
>ref|NM_001003912.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11 (Arhgef11), mRNA Length = 5617 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 2034 gcctcagcagcagcatccat 2015
>emb|AL357124.19| Human DNA sequence from clone RP11-472A16 on chromosome 6, complete sequence Length = 120039 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaaagacacattatctagat 85 |||||||||||||||||||| Sbjct: 71380 aaaagacacattatctagat 71399
>gb|AY267640.1| Bigelowiella natans ribosomal protein rpL12 mRNA, partial cds; nuclear gene for plastid product Length = 593 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ttagcctctgcctcagcagcagca 193 ||||||||| |||||||||||||| Sbjct: 240 ttagcctcttcctcagcagcagca 217
>gb|AC159540.1| Homo sapiens BAC clone RP11-474M15 from 2, complete sequence Length = 173191 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 141717 cctgctcctcctctggaagt 141698 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 110973 cctgctcctcctctggaagt 110992
>gb|AC161929.4| Mus musculus chromosome 7, clone RP23-120D7, complete sequence Length = 193326 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aagaccctgtatcaagacaa 23 |||||||||||||||||||| Sbjct: 76387 aagaccctgtatcaagacaa 76368
>emb|CR932800.1| Mus musculus chromosome 2, clone ResGen-169L23 strain 129/Sv, complete sequence Length = 124093 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 agcctctgcctcagcagcag 191 |||||||||||||||||||| Sbjct: 75578 agcctctgcctcagcagcag 75597
>gb|AC106712.5| Homo sapiens 3 BAC RP11-221J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160742 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aaaaacagatcataaaacag 65 |||||||||||||||||||| Sbjct: 102752 aaaaacagatcataaaacag 102733
>gb|AC095047.2| Homo sapiens BAC clone RP11-219G14 from 4, complete sequence Length = 72660 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agacacataacccaacttca 524 |||||||||||||||||||| Sbjct: 45299 agacacataacccaacttca 45280
>dbj|AK157225.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830207D02 product:Rho guanine nucleotide exchange factor (GEF) 11, full insert sequence Length = 5618 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 3128 gcctcagcagcagcatccat 3109
>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence Length = 228486 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 150180 gcctcagcagcagcatccat 150199
>emb|BX323074.14| Zebrafish DNA sequence from clone RP71-26B20, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aacagaaaagacacattatc 80 |||||||||||||||||||| Sbjct: 147285 aacagaaaagacacattatc 147266
>gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete sequence Length = 128447 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tctgcctcagcagcagcatc 195 |||||||||||||||||||| Sbjct: 118693 tctgcctcagcagcagcatc 118712
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggcgaacctgctcctcctct 253 |||||||||||||||||||| Sbjct: 8065476 ggcgaacctgctcctcctct 8065457
>gb|AC092683.3| Homo sapiens BAC clone RP11-734K23 from 2, complete sequence Length = 174105 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 100738 cctgctcctcctctggaagt 100719 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 69994 cctgctcctcctctggaagt 70013
>gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, complete sequence Length = 151336 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gacacattatctagataaaa 89 |||||||||||||||||||| Sbjct: 19626 gacacattatctagataaaa 19607
>gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, complete sequence Length = 191055 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 18380 cctgctcctcctctggaagt 18361
>gb|AC148032.2| Homo sapiens BAC clone RP13-809J14 from 2, complete sequence Length = 155256 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctgctcctcctctggaagt 259 |||||||||||||||||||| Sbjct: 153495 cctgctcctcctctggaagt 153514
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggcgaacctgctcctcctct 253 |||||||||||||||||||| Sbjct: 103673 ggcgaacctgctcctcctct 103654
>dbj|AK109746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F02, full insert sequence Length = 1739 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ggcgaacctgctcctcctct 253 |||||||||||||||||||| Sbjct: 1156 ggcgaacctgctcctcctct 1175
>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete sequence Length = 174127 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 catctcctgtgcagtagcat 215 |||||||||||||||||||| Sbjct: 92118 catctcctgtgcagtagcat 92099
>gb|BC079565.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11, mRNA (cDNA clone MGC:90827 IMAGE:30536257), complete cds Length = 5617 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcctcagcagcagcatccat 198 |||||||||||||||||||| Sbjct: 2034 gcctcagcagcagcatccat 2015
>emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chromosome 2, complete sequence Length = 201120 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 agcctctgcctcagcagcag 191 |||||||||||||||||||| Sbjct: 162236 agcctctgcctcagcagcag 162255
>emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chromosome 4, complete sequence Length = 125201 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 caggatctttcacaagcaca 346 |||||||||||||||||||| Sbjct: 74917 caggatctttcacaagcaca 74936
>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence Length = 182356 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 catctcctgtgcagtagcat 215 |||||||||||||||||||| Sbjct: 142734 catctcctgtgcagtagcat 142753
>emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chromosome 4, complete sequence Length = 212647 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 caggatctttcacaagcaca 346 |||||||||||||||||||| Sbjct: 146839 caggatctttcacaagcaca 146820
>emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on chromosome 4, complete sequence Length = 185210 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 caggatctttcacaagcaca 346 |||||||||||||||||||| Sbjct: 76799 caggatctttcacaagcaca 76780
>emb|AL606931.6| Mouse DNA sequence from clone RP23-162H3 on chromosome 4, complete sequence Length = 108136 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 caggatctttcacaagcaca 346 |||||||||||||||||||| Sbjct: 64258 caggatctttcacaagcaca 64277 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,110,994 Number of Sequences: 3902068 Number of extensions: 6110994 Number of successful extensions: 106953 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106782 Number of HSP's gapped (non-prelim): 171 length of query: 553 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 530 effective length of database: 17,143,297,704 effective search space: 9085947783120 effective search space used: 9085947783120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)