ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd26o22 |
|---|---|
| Clone Library Name | barley_pub |
>FEOB_HELPJ (Q9ZLF3) Ferrous iron transport protein B| Length = 642 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +2 Query: 206 YVGSTTSNHHSVHISAELNAPAQHIRHHLNVMKKFQNILKTMSAQQKRDSSFQHT 370 Y +TT+N + + P+Q + L + Q I K++ ++ K+++SF+HT Sbjct: 166 YSQNTTNNEN-------IKVPSQSFKESLKYSQSAQRIAKSVISENKQNASFEHT 213
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 233 HSVHISAELNAPAQHIRHHLNVMKKFQNILKTM 331 H +S++L Q + H+N ++KFQN +KT+ Sbjct: 1030 HWKKLSSQLVESCQKLEEHMNKLRKFQNHIKTL 1062
>PPR3A_RABIT (Q00756) Protein phosphatase 1 regulatory subunit 3A (Protein| phosphatase 1 glycogen-associated regulatory subunit) (Protein phosphatase type-1 glycogen targeting subunit) (RG1) Length = 1109 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = +2 Query: 101 SHGQTGI*GPQYRAFLYKLGTITSHAPDKLQEEEKYVGSTTSNHH-SVHISA----ELNA 265 S ++ + G Y Y G +SH P + E +G TTS+ +HIS+ + NA Sbjct: 380 SSAESSLKGDFYHTEKYSSGNESSHQPSDMGEINPSLGGTTSDGSVQLHISSKEILDDNA 439 Query: 266 PAQHIRHHLNVMKKFQNILKTMSAQQKRDSSFQHTDLE 379 H + F LK + +K + ++++++ Sbjct: 440 NPAHGSGRGEISCSFPGQLKASNLNKKYEGGAENSEMK 477
>SYI_MYCPE (Q8EUN9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 900 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = -2 Query: 487 CPHCWRPLPVDLVCR*VCQRCR--LGEPKV 404 C CW P +L+ +C+RC+ +G K+ Sbjct: 871 CERCWNYYPTNLIANELCERCKKVIGNKKI 900
>INVO_TARBA (P24711) Involucrin| Length = 387 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/70 (22%), Positives = 30/70 (42%) Frame = +2 Query: 185 KLQEEEKYVGSTTSNHHSVHISAELNAPAQHIRHHLNVMKKFQNILKTMSAQQKRDSSFQ 364 +LQE+E ++ VH+ +L H+ L + N+ K Q++++ Sbjct: 143 ELQEQEVHLEKQLQEPQEVHLEKQLQEQEVHLEKQLQEPEPELNLGKQQQEPQEQEAYLG 202 Query: 365 HTDLELPDGQ 394 ELP+ Q Sbjct: 203 KQQQELPEPQ 212
>BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3| Length = 1478 Score = 29.3 bits (64), Expect = 9.0 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%) Frame = +2 Query: 155 LGTITS--HAPDKLQEEEKYVGSTTSNHH---SVHI-------SAELNAPAQHIRHHLNV 298 LG I+ H DK + + VGS T N H SVHI EL +P Q Sbjct: 810 LGKISGLFHKKDKKENKRNSVGSDTRNRHDNGSVHILRNSSSSFRELESPRQ-------- 861 Query: 299 MKKFQNILKTM--SAQQKRDS 355 MK+F +++ T S+ ++R S Sbjct: 862 MKRFSSVVHTAVPSSSKRRTS 882
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 323 KTMSAQQKRDSSFQHTDLELPDGQMLSYFWFTKSAPLTYLAT 448 K + A + RD F HT+L D + + F+ T P T + T Sbjct: 1492 KNLFASEMRDILFLHTELVSSDSDVTNNFYETSETPFTPIYT 1533
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 323 KTMSAQQKRDSSFQHTDLELPDGQMLSYFWFTKSAPLTYLAT 448 K + A + RD F HT+L D + + F+ T P T + T Sbjct: 1492 KNLFASEMRDILFLHTELVSSDSDVTNNFYETSETPFTPIYT 1533
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 323 KTMSAQQKRDSSFQHTDLELPDGQMLSYFWFTKSAPLTYLAT 448 K + A + RD F HT+L D + + F+ T P T + T Sbjct: 1485 KNLFASEMRDILFLHTELVSSDSDVTNNFYETSETPFTPIYT 1526
>FUMC_LEPIN (Q8F9L0) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 464 Score = 29.3 bits (64), Expect = 9.0 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Frame = +2 Query: 194 EEEKYVGSTTSNH-HSVHISAELNAPAQHIRHHLNVMKKFQNILKT---MSAQQKRDSSF 361 ++ KY G+ T H HI + P + IR L ++KK ++ + ++ K+ Sbjct: 16 DDSKYWGAQTERSLHHFHIGND-RFPREMIRA-LGILKKSAAVVNAELGLLSEDKKKLIV 73 Query: 362 QHTDLELPDGQMLSYF----WFTKSAPLTYLATNEINRKGAPTMGASVNGTXSAVSTSD 526 Q D E+ G++ +F W T S T + +NE+ A + V G+ + +D Sbjct: 74 QAAD-EVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPND 131
>FUMC_LEPIC (Q72VY3) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 464 Score = 29.3 bits (64), Expect = 9.0 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Frame = +2 Query: 194 EEEKYVGSTTSNH-HSVHISAELNAPAQHIRHHLNVMKKFQNILKT---MSAQQKRDSSF 361 ++ KY G+ T H HI + P + IR L ++KK ++ + ++ K+ Sbjct: 16 DDSKYWGAQTERSLHHFHIGND-RFPREMIRA-LGILKKSAAVVNAELGLLSEDKKKLIV 73 Query: 362 QHTDLELPDGQMLSYF----WFTKSAPLTYLATNEINRKGAPTMGASVNGTXSAVSTSD 526 Q D E+ G++ +F W T S T + +NE+ A + V G+ + +D Sbjct: 74 QAAD-EVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPND 131
>CH60_LACAC (Q93G07) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 542 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 319 TENYVSATKKGLLFPAHRSRAA*WPDVK---LLLVHQVCTADIPSDKRDQPEGGA 474 T+ + + + G++ P +R A LLL + ADIP DK + P+ GA Sbjct: 480 TDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAVVADIPEDKPEAPQAGA 534
>SYI_MYCPU (Q98PQ2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 888 Score = 29.3 bits (64), Expect = 9.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -2 Query: 493 HXCPHCWRPLPVDLVCR*VCQRC 425 H CP CW + V +CQRC Sbjct: 860 HKCPRCWNHIEKTEVVEDLCQRC 882 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,234,070 Number of Sequences: 219361 Number of extensions: 1913668 Number of successful extensions: 4659 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4658 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
