>POLN_HEVME (Q03495) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA|
           polymerase/Helicase)
          Length = 1691

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 248 RCIQCASHHGILQDTTNMLHRCF 316
           RC++  +H   + D  N+LHRCF
Sbjct: 85  RCLEIGAHPRSINDNPNVLHRCF 107

>OR1N1_HUMAN (Q8NGS0) Olfactory receptor 1N1 (Olfactory receptor 1-26) (OR1-26)|
           (Olfactory receptor 1N3) (Olfactory receptor OR9-22)
          Length = 311

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 314 STCAAYL*YLVIFHGVMRTVYICAPS 237
           STC+++L  + +F+G + + Y+C PS
Sbjct: 237 STCSSHLCVVCVFYGTLFSAYLCPPS 262

>OR5DI_HUMAN (Q8NGL1) Olfactory receptor 5D18|
          Length = 313

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -2

Query: 344 RRKAMHGFIGSTCAAYL*YLVIFHGVMRTVYICAPS-----HSVNPELIVHSSVI 195
           RRKA      STCA++L  + IFHG +  +Y C P+     H+V    + ++ VI
Sbjct: 235 RRKAF-----STCASHLTAITIFHGTILFLY-CVPNSKNSRHTVKVASVFYTVVI 283

>OR5DG_HUMAN (Q8NGK9) Olfactory receptor 5D16|
          Length = 328

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -2

Query: 329 HGFIGSTCAAYL*YLVIFHGVMRTVYICAPS-----HSVNPELIVHSSVI 195
           H  + STCA++L  + IFHG +  +Y C P+     H+V    + ++ VI
Sbjct: 236 HRKVFSTCASHLTAITIFHGTILFLY-CVPNSKNSRHTVKVASVFYTVVI 284

>OR5DD_HUMAN (Q8NGL4) Olfactory receptor 5D13|
          Length = 314

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 314 STCAAYL*YLVIFHGVMRTVYICAPSHSVNPELIVHSSV 198
           STCA++L  + IFHG +  +Y C P+   +  ++  +SV
Sbjct: 241 STCASHLTAITIFHGTILFLY-CVPNPKTSSLIVTVASV 278

>OR5L1_HUMAN (Q8NGL2) Olfactory receptor 5L1 (OST262)|
          Length = 311

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 314 STCAAYL*YLVIFHGVMRTVYICAPS 237
           STCA++L  + +FHG + ++Y C PS
Sbjct: 239 STCASHLTAITVFHGTVLSIY-CRPS 263

>O11L1_HUMAN (Q8NGX0) Olfactory receptor 11L1|
          Length = 322

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -2

Query: 314 STCAAYL*YLVIFHGVMRTVYICAPSHSVNPEL 216
           STC ++L  + +++G M ++Y+C PS  + PE+
Sbjct: 239 STCGSHLAVVTLYYGTMISMYVC-PSPHLLPEI 270

>GAOA_DACDE (Q01745) Galactose oxidase precursor (EC 1.1.3.9) (GAO)|
          Length = 680

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 462 WSSSMRQKYG-LSSSRDYTYNTLDQNAVRPQ*EASVRQVMKKEGHAWLY-WK 313
           WS  + +K G + S    T+ +L    V P   A  + + + + HAWL+ WK
Sbjct: 331 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK 382

>YIGM_SALTY (P0A1U2) Hypothetical membrane protein yigM|
          Length = 299

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 467 FGWTPLGSARGREIGWSALGNKQRLP 544
           F W  LG+     + WS LGN Q+LP
Sbjct: 173 FAWFYLGAFLVAAVAWSLLGNAQKLP 198

>YIGM_SALTI (P0A1U3) Hypothetical membrane protein yigM|
          Length = 299

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 467 FGWTPLGSARGREIGWSALGNKQRLP 544
           F W  LG+     + WS LGN Q+LP
Sbjct: 173 FAWFYLGAFLVAAVAWSLLGNAQKLP 198

>5HT1D_RABIT (P49145) 5-hydroxytryptamine 1D receptor (5-HT-1D) (Serotonin|
           receptor 1D) (5-HT-1D-alpha)
          Length = 377

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 333 HAWLYWKHLCSIFVVSCNIPWCDAHCIHLCA*SL 232
           H W + + LC I+V S +I  C A  +HLC  +L
Sbjct: 102 HTWNFGQVLCDIWV-SSDITCCTASILHLCVIAL 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,002,377
Number of Sequences: 219361
Number of extensions: 1699580
Number of successful extensions: 4050
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4045
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)