Clone Name | rbasd26o20 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B05, full insert sequence Length = 1693 Score = 67.9 bits (34), Expect = 3e-08 Identities = 145/180 (80%), Gaps = 4/180 (2%) Strand = Plus / Minus Query: 385 tgcattttgatccagtgtgttgtaggtgtagtcccgtgaggagctcagtccatacttctg 444 ||||||| |||||||||||||||||||||||| | |||| ||| ||||||||| || Sbjct: 924 tgcatttggatccagtgtgttgtaggtgtagttgcttgagt---tcaatccatacttgtg 868 Query: 445 cctcatcgatgagctccataggttcggatggacgcctttggggtcagcccgtggtaggga 504 ||||| |||||||||||||| ||||||| ||| | | || || |||||||| | Sbjct: 867 tctcattcttgagctccataggtctggatggaaacctctagtatcggcg-gtggtaggaa 809 Query: 505 gataggatggagcgccttgggcaataagcagcggcttccttatgaccacaaaatcttcat 564 |||| | ||||| |||||||||| || || ||| |||||||||||||||||||||||| Sbjct: 808 gataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcat 749
>dbj|AK065285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence Length = 1136 Score = 67.9 bits (34), Expect = 3e-08 Identities = 145/180 (80%), Gaps = 4/180 (2%) Strand = Plus / Minus Query: 385 tgcattttgatccagtgtgttgtaggtgtagtcccgtgaggagctcagtccatacttctg 444 ||||||| |||||||||||||||||||||||| | |||| ||| ||||||||| || Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagttgcttgagt---tcaatccatacttgtg 740 Query: 445 cctcatcgatgagctccataggttcggatggacgcctttggggtcagcccgtggtaggga 504 ||||| |||||||||||||| ||||||| ||| | | || || |||||||| | Sbjct: 739 tctcattcttgagctccataggtctggatggaaacctctagtatcggcg-gtggtaggaa 681 Query: 505 gataggatggagcgccttgggcaataagcagcggcttccttatgaccacaaaatcttcat 564 |||| | ||||| |||||||||| || || ||| |||||||||||||||||||||||| Sbjct: 680 gataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcat 621
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 495 gtggtagggagataggatggagcgccttgggcaataagcagcggcttccttatgaccaca 554 |||||||| ||||| | ||||| |||||||||| || || ||| |||||||||||||| Sbjct: 30666861 gtggtaggaagataagcgggagcaccttgggcaaccagaagtggcctccttatgaccaca 30666802 Query: 555 aaatcttcat 564 |||||||||| Sbjct: 30666801 aaatcttcat 30666792 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 385 tgcattttgatccagtgtgttgtaggtgtagt 416 ||||||| |||||||||||||||||||||||| Sbjct: 30668057 tgcatttggatccagtgtgttgtaggtgtagt 30668026
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 495 gtggtagggagataggatggagcgccttgggcaataagcagcggcttccttatgaccaca 554 |||||||| ||||| | ||||| |||||||||| || || ||| |||||||||||||| Sbjct: 69517 gtggtaggaagataagcgggagcaccttgggcaaccagaagtggcctccttatgaccaca 69458 Query: 555 aaatcttcat 564 |||||||||| Sbjct: 69457 aaatcttcat 69448 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 385 tgcattttgatccagtgtgttgtaggtgtagt 416 ||||||| |||||||||||||||||||||||| Sbjct: 70713 tgcatttggatccagtgtgttgtaggtgtagt 70682
>dbj|AK098979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C17, full insert sequence Length = 1120 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 495 gtggtagggagataggatggagcgccttgggcaataagcagcggcttccttatgaccaca 554 |||||||| ||||| | ||||| |||||||||| || || ||| |||||||||||||| Sbjct: 690 gtggtaggaagataagcgggagcaccttgggcaaccagaagtggcctccttatgaccaca 631 Query: 555 aaatcttcat 564 |||||||||| Sbjct: 630 aaatcttcat 621 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 385 tgcattttgatccagtgtgttgtaggtgtagt 416 ||||||| |||||||||||||||||||||||| Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagt 765
>gb|AC102643.9| Mus musculus chromosome 8, clone RP23-304B22, complete sequence Length = 210037 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 tattacaagatactacaaata 299 ||||||||||||||||||||| Sbjct: 70056 tattacaagatactacaaata 70076
>ref|XM_633319.1| Dictyostelium discoideum putative AGC family protein kinase (DDB0219984), partial mRNA Length = 4008 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 attacaagatactacaaata 299 |||||||||||||||||||| Sbjct: 1536 attacaagatactacaaata 1555
>gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene, complete cds Length = 88577 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 aaagccatgcatggccttccttct 344 ||||||||||||||| |||||||| Sbjct: 50666 aaagccatgcatggcattccttct 50689
>gb|AY028079.1| Homo sapiens putative protein and FSHD Region Gene 2 protein (HSA10-FRG2) genes, complete cds Length = 126625 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcacaccatggaatattaca 285 |||||||||||||||||||| Sbjct: 29923 tcacaccatggaatattaca 29904
>gb|AC120555.9| Mus musculus chromosome 12, clone RP24-311D18, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 aatattacaagatactacaaatat 300 |||||||||| ||||||||||||| Sbjct: 29069 aatattacaaaatactacaaatat 29092
>gb|AC148207.4| Callicebus moloch clone LB5-404B3, complete sequence Length = 175081 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 catgcatggccttccttcttcatc 349 ||||||||||||||||||| |||| Sbjct: 155641 catgcatggccttccttctacatc 155664
>emb|AJ810898.1| Ruminococcus flavefaciens cbpA gene for cellulose-binding protein, strain 17 Length = 2320 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 ataagcagcggcttccttat 547 |||||||||||||||||||| Sbjct: 402 ataagcagcggcttccttat 383
>ref|XM_753124.1| Ustilago maydis 521 hypothetical protein (UM02070.1) partial mRNA Length = 987 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 actagccaaccagggtcaca 177 |||||||||||||||||||| Sbjct: 729 actagccaaccagggtcaca 748
>gb|AC005236.4| Homo sapiens BAC clone RP11-479C13 from 7, complete sequence Length = 87593 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 ctagcttaataaacacccaaggaa 134 ||||||||||||| |||||||||| Sbjct: 43014 ctagcttaataaaaacccaaggaa 42991
>emb|AL731769.4| Human DNA sequence from clone XX-2136C236 on chromosome 10 Contains the 5' end of a olfactory receptor protein pseudogene, complete sequence Length = 37858 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcacaccatggaatattaca 285 |||||||||||||||||||| Sbjct: 2776 tcacaccatggaatattaca 2757
>emb|AL356959.9| Human DNA sequence from clone RP3-383B8 on chromosome 6, complete sequence Length = 50809 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aggatctttttcacttaata 94 |||||||||||||||||||| Sbjct: 50066 aggatctttttcacttaata 50047
>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33 Contains two novel genes, a novel pseudogene, a novel gene (LOC200010), a novel gene similar to connexin and one CpG island, complete sequence Length = 181678 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 ctagcttaataaacacccaaggaa 134 ||||||||||||| |||||||||| Sbjct: 140983 ctagcttaataaaaacccaaggaa 140960
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 320 taaagccatgcatggccttccttcttca 347 ||||| |||| ||||||||||||||||| Sbjct: 129376 taaaggcatgtatggccttccttcttca 129403
>emb|AJ639869.1| Phascogale tapoatafa complete mitochondrial genome Length = 17405 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 atattacaagatactacaaatatg 301 ||||||||||||| |||||||||| Sbjct: 16920 atattacaagatattacaaatatg 16943
>emb|BX324005.11| Zebrafish DNA sequence from clone DKEY-115F6 in linkage group 13, complete sequence Length = 66154 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 aggagctcagtccatacttc 442 |||||||||||||||||||| Sbjct: 15665 aggagctcagtccatacttc 15646
>gb|AC173999.3| Pan troglodytes BAC clone CH251-530E14 from chromosome 7, complete sequence Length = 166256 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 ctagcttaataaacacccaaggaa 134 ||||||||||||| |||||||||| Sbjct: 108704 ctagcttaataaaaacccaaggaa 108727
>gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170004 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 aaagccatgcatggccttccttct 344 ||||||||||||||| |||||||| Sbjct: 132736 aaagccatgcatggcattccttct 132759
>ref|XM_687660.1| PREDICTED: Danio rerio similar to Semaphorin 4G precursor (LOC564320), mRNA Length = 2637 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 aggagctcagtccatacttc 442 |||||||||||||||||||| Sbjct: 803 aggagctcagtccatacttc 822
>ref|XM_679674.1| PREDICTED: Danio rerio similar to Semaphorin 4G precursor (LOC556774), partial mRNA Length = 2516 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 aggagctcagtccatacttc 442 |||||||||||||||||||| Sbjct: 676 aggagctcagtccatacttc 695
>gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene, complete cds Length = 88066 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 aaagccatgcatggccttccttct 344 ||||||||||||||| |||||||| Sbjct: 50632 aaagccatgcatggcattccttct 50655
>gb|AC147870.3| Monodelphis domestica clone VMRC6-297C9, complete sequence Length = 130886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctcaccacacaactaaaact 51 |||||||||||||||||||| Sbjct: 129546 ctcaccacacaactaaaact 129565
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence Length = 168486 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 attttgatccagtgtgttgt 407 |||||||||||||||||||| Sbjct: 78940 attttgatccagtgtgttgt 78921
>gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, complete sequence Length = 182783 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 aatattacaagatactacaaatat 300 |||||||||| ||||||||||||| Sbjct: 162423 aatattacaaaatactacaaatat 162446
>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence Length = 172148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ggaactatgcacaatgagtt 220 |||||||||||||||||||| Sbjct: 85917 ggaactatgcacaatgagtt 85898
>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence Length = 208909 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 aggagctcagtccatacttc 442 |||||||||||||||||||| Sbjct: 42703 aggagctcagtccatacttc 42722
>emb|AL161645.14| Human DNA sequence from clone RP11-108K14 on chromosome 10 Contains the 3' end of a novel gene (LOC92170) (FLJ90495, FLJ39553), three novel genes, the CYP2E1 gene for family 2 subfamily E polypeptide 1 cytochrome P450, a novel gene (LOC93426), the 3' end of a olfactory receptor protein pseudogene and eight CpG islands, complete sequence Length = 161644 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcacaccatggaatattaca 285 |||||||||||||||||||| Sbjct: 18693 tcacaccatggaatattaca 18674
>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403, complete sequence Length = 97807 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 catggccttccttcttcatc 349 |||||||||||||||||||| Sbjct: 7710 catggccttccttcttcatc 7691
>gb|AC148120.4| Saimiri boliviensis boliviensis clone CH254-165N18, complete sequence Length = 199625 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 catgcatggccttccttcttcatc 349 ||||||||||||||||||| |||| Sbjct: 139654 catgcatggccttccttctacatc 139677
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctcaccacacaactaaaact 51 |||||||||||||||||||| Sbjct: 1377224 ctcaccacacaactaaaact 1377243
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 catgcatggccttccttcttcatc 349 ||||||||||||||||||| |||| Sbjct: 2085563 catgcatggccttccttctacatc 2085586 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,177,163 Number of Sequences: 3902068 Number of extensions: 5177163 Number of successful extensions: 90984 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90871 Number of HSP's gapped (non-prelim): 113 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)