ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
3emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057... 76 1e-10
4ref|XM_705137.1| Candida albicans SC5314 putative rRNA methyltra... 48 0.031
5gb|AY560019.1| Thlaspi goesingense metal tolerance protein 1 var... 46 0.12
6gb|AY560017.1| Thlaspi goesingense metal tolerance protein 1 var... 46 0.12
7gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 46 0.12
8gb|AY044453.2| Thlaspi goesingense putative vacuolar metal-ion t... 46 0.12
9gb|AY044452.2| Thlaspi goesingense putative vacuolar metal-ion t... 46 0.12
10gb|AY680385.1| Picea glauca homeobox transcription factor KN3 (K... 44 0.49
11dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465 44 0.49
12emb|AL645531.10| Mouse DNA sequence from clone RP23-191E19 on ch... 44 0.49
13gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
14gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.9
15gb|AY483144.1| Noccaea fendleri heavy metal transporter MTP1 mRN... 42 1.9
16gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
17gb|AY483146.1| Thlaspi caerulescens heavy metal transporter MTP1... 42 1.9
18gb|AY560018.1| Thlaspi goesingense metal tolerance protein 1 var... 42 1.9
19ref|XM_743057.1| Aspergillus fumigatus Af293 GPI anchored protei... 42 1.9
20emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in ... 42 1.9
21emb|AJ704808.1| Arabidopsis lyrata subsp. petraea partial mRNA f... 42 1.9
22ref|XM_572127.1| Cryptococcus neoformans var. neoformans JEC21 c... 42 1.9
23gb|AF275750.1|AF275750 Thlaspi caerulescens zinc transporter (ZT... 42 1.9
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26dbj|AB117520.1| Filobasidiella neoformans Cnfkh1 mRNA for fork h... 42 1.9
27dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
28gb|AY311490.1| Thlaspi caerulescens cation-efflux transporter (C... 42 1.9
29gb|L03382.1|RATPHOLA02 Rat phospholamban gene exon 2, complete cds 42 1.9
30gb|AC007548.10| Drosophila melanogaster clone BACR48M17, complet... 40 7.6
31ref|NM_110992.1| Arabidopsis thaliana aldose 1-epimerase AT3G012... 40 7.6
32ref|XM_635835.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
33ref|XM_705132.1| Candida albicans SC5314 putative rRNA methyltra... 40 7.6
34gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC... 40 7.6
35gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC... 40 7.6
36gb|AC101797.5| Mus musculus chromosome 1, clone RP24-211O21, com... 40 7.6
37emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in ... 40 7.6
38emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chr... 40 7.6
39emb|AL662920.14| Mouse DNA sequence from clone RP23-98M4 on chro... 40 7.6
40gb|AF452375.2| Rhodococcus aetherivorans strain I24 cosmid 3H1, ... 40 7.6
41gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, com... 40 7.6
42dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 7.6
43dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.6
44gb|AE012054.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.6
45dbj|AB228353.1| Aspergillus oryzae cDNA, contig sequence: AoEST5226 40 7.6
46dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 7.6
47ref|XM_627337.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.6
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
49gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, r... 40 7.6
50gb|AC026480.6|AC026480 Arabidopsis thaliana chromosome 1 BAC F15... 40 7.6
51gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, comple... 40 7.6
52emb|BX005446.8| Mouse DNA sequence from clone RP23-20G23 on chro... 40 7.6
53dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
54gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36... 40 7.6
55gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83... 40 7.6
56gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 7.6
57emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in... 40 7.6
58emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 i... 40 7.6
59gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, comple... 40 7.6
60gb|AC004045.1|AC004045 Homo sapiens chromosome 4 clone B139M23 m... 40 7.6 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/101 (88%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                           
Query: 330     gaaatgaacaaatc--gactatttatacaaatcaaatctaacaaactggcaaaat-gtta 386
               |||||||| |||||  |||||||||||||| ||||||||||||  |||| ||||| ||||
Sbjct: 3295870 gaaatgaagaaatcaggactatttatacaa-tcaaatctaacaggctggaaaaatcgtta 3295928

                                                        
Query: 387     ctgctaggcaactttacagtgctatccatcttggtgacgaa 427
               |||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 3295929 ctgctagg-aactttacagtgctaccaatcttggtgtcgaa 3295968



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                                
Query: 193     aaacacatgtcatgctta-tttgacataagctc 224
               |||||||| ||||||||| ||||||||||||||
Sbjct: 3295737 aaacacatatcatgcttattttgacataagctc 3295769
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/101 (88%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                           
Query: 330     gaaatgaacaaatc--gactatttatacaaatcaaatctaacaaactggcaaaat-gtta 386
               |||||||| |||||  |||||||||||||| ||||||||||||  |||| ||||| ||||
Sbjct: 3295815 gaaatgaagaaatcaggactatttatacaa-tcaaatctaacaggctggaaaaatcgtta 3295873

                                                        
Query: 387     ctgctaggcaactttacagtgctatccatcttggtgacgaa 427
               |||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 3295874 ctgctagg-aactttacagtgctaccaatcttggtgtcgaa 3295913



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                                
Query: 193     aaacacatgtcatgcttat-ttgacataagctc 224
               |||||||| |||||||||| |||||||||||||
Sbjct: 3295682 aaacacatatcatgcttattttgacataagctc 3295714
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>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109081

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/101 (88%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                         
Query: 330   gaaatgaacaaatc--gactatttatacaaatcaaatctaacaaactggcaaaat-gtta 386
             |||||||| |||||  |||||||||||||| ||||||||||||  |||| ||||| ||||
Sbjct: 86256 gaaatgaagaaatcaggactatttatacaa-tcaaatctaacaggctggaaaaatcgtta 86314

                                                      
Query: 387   ctgctaggcaactttacagtgctatccatcttggtgacgaa 427
             |||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 86315 ctgctagg-aactttacagtgctaccaatcttggtgtcgaa 86354



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                              
Query: 193   aaacacatgtcatgctta-tttgacataagctc 224
             |||||||| ||||||||| ||||||||||||||
Sbjct: 86123 aaacacatatcatgcttattttgacataagctc 86155
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>ref|XM_705137.1| Candida albicans SC5314 putative rRNA methyltransferase
           (CaO19.7727), mRNA
          Length = 2562

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 530 gtcatggtcatggtcatcgtcatc 553
           ||||||||||||||||||||||||
Sbjct: 903 gtcatggtcatggtcatcgtcatc 880
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>gb|AY560019.1| Thlaspi goesingense metal tolerance protein 1 variant c (MTP1)
           gene, MTP1-c allele, complete cds
          Length = 1191

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 526 catagtcatggtcatggtcatcgtcat 552
           ||||||||||||||||||||| |||||
Sbjct: 544 catagtcatggtcatggtcatggtcat 570
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>gb|AY560017.1| Thlaspi goesingense metal tolerance protein 1 variant a (MTP1)
           gene, MTP1-a allele, complete cds
          Length = 1173

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 526 catagtcatggtcatggtcatcgtcat 552
           ||||||||||||||||||||| |||||
Sbjct: 544 catagtcatggtcatggtcatggtcat 570
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>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 526    catagtcatggtcatggtcatcgtcat 552
              ||||||||||||||| |||||||||||
Sbjct: 132139 catagtcatggtcatcgtcatcgtcat 132113



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 530    gtcatggtcatggtcatcgtcatcg 554
              ||||| |||||||||||||||||||
Sbjct: 132141 gtcatagtcatggtcatcgtcatcg 132117
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>gb|AY044453.2| Thlaspi goesingense putative vacuolar metal-ion transport protein
           MTP1t1 (MTP1) mRNA, complete cds
          Length = 1179

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 526 catagtcatggtcatggtcatcgtcat 552
           ||||||||||||||||||||| |||||
Sbjct: 544 catagtcatggtcatggtcatggtcat 570
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>gb|AY044452.2| Thlaspi goesingense putative vacuolar metal-ion transport protein
           MTP1 (MTP1) gene, complete cds
          Length = 1179

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 526 catagtcatggtcatggtcatcgtcat 552
           ||||||||||||||||||||| |||||
Sbjct: 544 catagtcatggtcatggtcatggtcat 570
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>gb|AY680385.1| Picea glauca homeobox transcription factor KN3 (Kn3) gene, exons 1,
           2, 3 and partial cds
          Length = 1521

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 527 atagtcatggtcatggtcatcgtcat 552
           |||||||||||||||||||| |||||
Sbjct: 247 atagtcatggtcatggtcatggtcat 272
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>dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465
          Length = 158570

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 529  agtcatggtcatggtcatcgtc 550
            ||||||||||||||||||||||
Sbjct: 2257 agtcatggtcatggtcatcgtc 2236
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>emb|AL645531.10| Mouse DNA sequence from clone RP23-191E19 on chromosome 4, complete
             sequence
          Length = 97801

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 529   agtcatggtcatggtcatcgtc 550
             ||||||||||||||||||||||
Sbjct: 18348 agtcatggtcatggtcatcgtc 18327
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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
              complete sequence
          Length = 114135

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 36     tgcatttgtacatccaaagtcaaaa 60
              ||||||||| |||||||||||||||
Sbjct: 111902 tgcatttgtccatccaaagtcaaaa 111926
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 526     catagtcatggtcatggtcat 546
               |||||||||||||||||||||
Sbjct: 1267388 catagtcatggtcatggtcat 1267368
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>gb|AY483144.1| Noccaea fendleri heavy metal transporter MTP1 mRNA, complete cds
          Length = 1179

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 544 catagtcatggtcatggtcat 564
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>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04,
             complete sequence
          Length = 141171

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    tgcatttgtacatccaaagtcaaaa 60
             ||||||||| |||||||||||||||
Sbjct: 42712 tgcatttgtccatccaaagtcaaaa 42736
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>gb|AY483146.1| Thlaspi caerulescens heavy metal transporter MTP1 mRNA, complete
           cds
          Length = 1191

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 544 catagtcatggtcatggtcat 564
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>gb|AY560018.1| Thlaspi goesingense metal tolerance protein 1 variant b (MTP1)
           gene, MTP1-b allele, complete cds
          Length = 1173

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 544 catagtcatggtcatggtcat 564
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>ref|XM_743057.1| Aspergillus fumigatus Af293 GPI anchored protein (Afu5g01920)
           partial mRNA
          Length = 618

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 530 gtcatggtcatggtcatcgtcatcg 554
           |||||||||||||||||| ||||||
Sbjct: 309 gtcatggtcatggtcatcatcatcg 285
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>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15,
              complete sequence
          Length = 201465

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    caaatcaaatctaacaaactg 375
              |||||||||||||||||||||
Sbjct: 164529 caaatcaaatctaacaaactg 164509
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>emb|AJ704808.1| Arabidopsis lyrata subsp. petraea partial mRNA for putative zinc
           transport protein MTP1-2
          Length = 256

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 163 catagtcatggtcatggtcat 183
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>ref|XM_572127.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 2676

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 526  catagtcatggtcatggtcat 546
            |||||||||||||||||||||
Sbjct: 2221 catagtcatggtcatggtcat 2241
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>gb|AF275750.1|AF275750 Thlaspi caerulescens zinc transporter (ZTP1) mRNA, complete cds
          Length = 1353

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 594 catagtcatggtcatggtcat 614
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 528      tagtcatggtcatggtcatcgtcat 552
                ||||||||||||||||||| |||||
Sbjct: 22761969 tagtcatggtcatggtcatggtcat 22761993
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 36      tgcatttgtacatccaaagtcaaaa 60
               ||||||||| |||||||||||||||
Sbjct: 5905138 tgcatttgtccatccaaagtcaaaa 5905162
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>dbj|AB117520.1| Filobasidiella neoformans Cnfkh1 mRNA for fork head domain protein,
            complete cds
          Length = 3055

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 526  catagtcatggtcatggtcat 546
            |||||||||||||||||||||
Sbjct: 2560 catagtcatggtcatggtcat 2580
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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 528   tagtcatggtcatggtcatcgtcat 552
             ||||||||||||||||||| |||||
Sbjct: 48920 tagtcatggtcatggtcatggtcat 48944
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>gb|AY311490.1| Thlaspi caerulescens cation-efflux transporter (CET1) mRNA,
           complete cds
          Length = 1191

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 catagtcatggtcatggtcat 546
           |||||||||||||||||||||
Sbjct: 544 catagtcatggtcatggtcat 564
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>gb|L03382.1|RATPHOLA02 Rat phospholamban gene exon 2, complete cds
          Length = 1786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 530  gtcatggtcatggtcatcgtcatcg 554
            ||||| |||||||||||||||||||
Sbjct: 1485 gtcatcgtcatggtcatcgtcatcg 1461
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>gb|AC007548.10| Drosophila melanogaster clone BACR48M17, complete sequence
          Length = 160022

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    gatcaacaactacatgacat 138
              ||||||||||||||||||||
Sbjct: 107920 gatcaacaactacatgacat 107939
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>ref|NM_110992.1| Arabidopsis thaliana aldose 1-epimerase AT3G01260 mRNA, complete
           cds
          Length = 1205

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 531 tcatggtcatggtcatcgtcatcg 554
           |||| |||||||||||||||||||
Sbjct: 179 tcatcgtcatggtcatcgtcatcg 156
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>ref|XM_635835.1| Dictyostelium discoideum hypothetical protein (DDB0204126), partial
            mRNA
          Length = 8193

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 530  gtcatggtcatggtcatcgtcatc 553
            ||||||||||||||||| ||||||
Sbjct: 2060 gtcatggtcatggtcatggtcatc 2083
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>ref|XM_705132.1| Candida albicans SC5314 putative rRNA methyltransferase (CaO19.76),
           mRNA
          Length = 2538

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 tggtcatggtcatcgtcatc 553
           ||||||||||||||||||||
Sbjct: 899 tggtcatggtcatcgtcatc 880
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>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
             complete sequence
          Length = 93735

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 531   tcatggtcatggtcatcgtcatcg 554
             |||| |||||||||||||||||||
Sbjct: 15392 tcatcgtcatggtcatcgtcatcg 15369
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>gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence,
             complete sequence
          Length = 58448

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 531   tcatggtcatggtcatcgtcatcg 554
             |||| |||||||||||||||||||
Sbjct: 57038 tcatcgtcatggtcatcgtcatcg 57015
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>gb|AC101797.5| Mus musculus chromosome 1, clone RP24-211O21, complete sequence
          Length = 169292

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   caaaatgttactgctaggca 396
             ||||||||||||||||||||
Sbjct: 95668 caaaatgttactgctaggca 95687
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>emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in linkage group 3, complete
              sequence
          Length = 194804

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ccctaaaatacaccacacca 278
              ||||||||||||||||||||
Sbjct: 178792 ccctaaaatacaccacacca 178773
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>emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chromosome 10 Contains the
              gene for a novel glutathione-S-transferase gene(LOC119391),
              a novel gene (KIAA1754), the 5'end of a novel gene
              (FLJ35908), two novel genes and two CpG islands, complete
              sequence
          Length = 178428

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      atgaatatattttgattctt 22
              ||||||||||||||||||||
Sbjct: 104740 atgaatatattttgattctt 104759
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>emb|AL662920.14| Mouse DNA sequence from clone RP23-98M4 on chromosome 1 Contains part of
              the gene for ortholog of human amyotrophic lateral
              sclerosis 2 (juvenile) chromosome region candidate 19
              (ALS2CR19) and a novel gene, complete sequence
          Length = 146582

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    caaaatgttactgctaggca 396
              ||||||||||||||||||||
Sbjct: 113036 caaaatgttactgctaggca 113017
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>gb|AF452375.2| Rhodococcus aetherivorans strain I24 cosmid 3H1, partial sequence
          Length = 6437

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 530  gtcatggtcatggtcatcgtcatc 553
            ||||||||||||||||| ||||||
Sbjct: 1014 gtcatggtcatggtcatggtcatc 1037
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>gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, complete sequence
          Length = 144578

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 6     aatatattttgattcttacaatctcaat 33
             |||||||||||||||| ||| |||||||
Sbjct: 34583 aatatattttgattctgacactctcaat 34556
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 523    gagcatagtcatggtcatggtcat 546
              |||||| |||||||||||||||||
Sbjct: 110437 gagcatggtcatggtcatggtcat 110414
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 530    gtcatggtcatggtcatcgtcatc 553
              ||||||||||||||||| ||||||
Sbjct: 375267 gtcatggtcatggtcatggtcatc 375244
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>gb|AE012054.1| Xanthomonas axonopodis pv. citri str. 306,  section 432 of 469 of the
            complete genome
          Length = 14572

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 530  gtcatggtcatggtcatcgtcatc 553
            ||||||||||||||||| ||||||
Sbjct: 8763 gtcatggtcatggtcatggtcatc 8786



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 529  agtcatggtcatggtcatcgtcat 552
            |||||||||||||||||| |||||
Sbjct: 8726 agtcatggtcatggtcatggtcat 8749
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>dbj|AB228353.1| Aspergillus oryzae cDNA, contig sequence: AoEST5226
          Length = 536

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 tggtcatcgtcatcggaata 559
           ||||||||||||||||||||
Sbjct: 326 tggtcatcgtcatcggaata 307
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 540    tggtcatcgtcatcggaata 559
              ||||||||||||||||||||
Sbjct: 888399 tggtcatcgtcatcggaata 888418
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>ref|XM_627337.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4510),
           partial mRNA
          Length = 3237

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 525 gcatagtcatggtcatggtcatcgtcat 552
           |||| ||||||||||||||||| |||||
Sbjct: 711 gcatggtcatggtcatggtcatggtcat 738
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 2        aatgaatatattttgattct 21
                ||||||||||||||||||||
Sbjct: 24950564 aatgaatatattttgattct 24950583
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>gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
             BACR06D02, complete sequence
          Length = 172791

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   tggtcatggtcatcgtcatc 553
             ||||||||||||||||||||
Sbjct: 33283 tggtcatggtcatcgtcatc 33264
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>gb|AC026480.6|AC026480 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete
             sequence
          Length = 90248

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 527   atagtcatggtcatggtcatcgtcatcg 554
             |||||||| ||||| |||||||||||||
Sbjct: 79928 atagtcatcgtcatcgtcatcgtcatcg 79901
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>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence
          Length = 198961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 525   gcatagtcatggtcatggtcatcgtcat 552
             |||| ||||||||||||||||| |||||
Sbjct: 69138 gcatggtcatggtcatggtcatggtcat 69111
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>emb|BX005446.8| Mouse DNA sequence from clone RP23-20G23 on chromosome X, complete
             sequence
          Length = 159892

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     aatgaatatattttgattct 21
             ||||||||||||||||||||
Sbjct: 17111 aatgaatatattttgattct 17130
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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      aatgaatatattttgattct 21
              ||||||||||||||||||||
Sbjct: 111847 aatgaatatattttgattct 111866
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>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete
             sequence
          Length = 254438

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   tggtcatggtcatcgtcatc 553
             ||||||||||||||||||||
Sbjct: 69139 tggtcatggtcatcgtcatc 69120
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>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete
              sequence
          Length = 491220

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    gatcaacaactacatgacat 138
              ||||||||||||||||||||
Sbjct: 149892 gatcaacaactacatgacat 149873
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 530    gtcatggtcatggtcatcgtcatc 553
              ||||||||||||||||| ||||||
Sbjct: 338682 gtcatggtcatggtcatggtcatc 338705
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>emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in linkage group 22,
              complete sequence
          Length = 243709

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    ctacaggactataaatcgaa 332
              ||||||||||||||||||||
Sbjct: 238269 ctacaggactataaatcgaa 238250
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>emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 in linkage group 5,
             complete sequence
          Length = 153980

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ccctaaaatacaccacacca 278
             ||||||||||||||||||||
Sbjct: 32913 ccctaaaatacaccacacca 32932
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>gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, complete sequence
          Length = 165568

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 529    agtcatggtcatggtcatcgtcat 552
              |||||||||||||||||| |||||
Sbjct: 126846 agtcatggtcatggtcatggtcat 126869
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>gb|AC004045.1|AC004045 Homo sapiens chromosome 4 clone B139M23 map 4q25, complete sequence
          Length = 106346

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  taacaaactggcaaaatgtt 385
            ||||||||||||||||||||
Sbjct: 4013 taacaaactggcaaaatgtt 3994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,946,573
Number of Sequences: 3902068
Number of extensions: 4946573
Number of successful extensions: 99334
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98894
Number of HSP's gapped (non-prelim): 410
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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