ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27d17 |
|---|---|
| Clone Library Name | barley_pub |
>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2) Length = 199 Score = 145 bits (365), Expect = 2e-34 Identities = 74/183 (40%), Positives = 120/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R A+KC+ KAI+KGN++ ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L T NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 144 bits (362), Expect = 4e-34 Identities = 74/183 (40%), Positives = 119/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R A+KCE KAI+KGN + ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ +L++RLA Sbjct: 136 MSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQ--GQTGSVGTSVASTEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 143 bits (361), Expect = 5e-34 Identities = 74/183 (40%), Positives = 120/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R A+KC+ KAI+KGN++ ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L T NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2| (Chromatin-modifying protein 1b-2) (CHMP1b-2) Length = 199 Score = 143 bits (360), Expect = 6e-34 Identities = 73/183 (39%), Positives = 119/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R A+KC+ KAI+KGN + ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGASVASTEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 142 bits (359), Expect = 8e-34 Identities = 73/183 (39%), Positives = 119/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R A+KCE KAI+KGN + ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQ--GQTGSVGTSVASTEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 142 bits (358), Expect = 1e-33 Identities = 72/183 (39%), Positives = 122/183 (66%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K LQR ++KC+ KAI+KGN++ ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VK +D++L + NL+K+S M+ FERQF ++VQ ME + Sbjct: 76 AARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDS 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V++LM ++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLA 193 Query: 189 ELK 181 +L+ Sbjct: 194 KLR 196
>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1| (Chromatin-modifying protein 1b-1) (CHMP1b-1) Length = 199 Score = 142 bits (358), Expect = 1e-33 Identities = 72/183 (39%), Positives = 120/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R ++KC+ KAI+KGN++ ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b| (Chromatin-modifying protein 1b) (CHMP1b) Length = 199 Score = 141 bits (356), Expect = 2e-33 Identities = 71/183 (38%), Positives = 120/183 (65%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L R +++C+ KAI+KGN++ ARI+AENAIR++ + +N+LR+++R+DAV Sbjct: 16 KELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAV 75 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 +R+ T M + KSM +VKS+D++L + NL+K+S MD FE QF ++VQ + ME Sbjct: 76 AARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENT 135 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +L++RLA Sbjct: 136 MSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ--GQTGSVGTSVASAEQDELSQRLA 193 Query: 189 ELK 181 L+ Sbjct: 194 RLR 196
>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 140 bits (352), Expect = 5e-33 Identities = 74/183 (40%), Positives = 114/183 (62%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L++ A+K E KA+ + NV+ AR+YAENAIRK+ E +N+LR+ASR+DAV Sbjct: 13 KQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 S++ T M+ + K+M + K+LD +L+T +LQK+S MD FE+Q N++V ME + Sbjct: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDS 132 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q L+RRLA Sbjct: 133 MSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLA 192 Query: 189 ELK 181 L+ Sbjct: 193 ALR 195
>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar protein sorting 46-1) (Vps46-1) (hVps46-1) Length = 196 Score = 140 bits (352), Expect = 5e-33 Identities = 74/183 (40%), Positives = 114/183 (62%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L++ A+K E KA+ + NV+ AR+YAENAIRK+ E +N+LR+ASR+DAV Sbjct: 13 KQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 S++ T M+ + K+M + K+LD +L+T +LQK+S MD FE+Q N++V ME + Sbjct: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDS 132 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q L+RRLA Sbjct: 133 MSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLA 192 Query: 189 ELK 181 L+ Sbjct: 193 ALR 195
>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 137 bits (345), Expect = 3e-32 Identities = 72/183 (39%), Positives = 114/183 (62%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L++ A+K E KA+++ NV+ AR+YAENAIRK+ E +N+LR+ASR+DAV Sbjct: 13 KQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 S++ T M+ + K+M + K+LD +L+ +LQK+S MD FE+Q N++V ME + Sbjct: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDS 132 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 ++ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q L+RRLA Sbjct: 133 VSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLA 192 Query: 189 ELK 181 L+ Sbjct: 193 ALR 195
>CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 198 Score = 136 bits (342), Expect = 8e-32 Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L+R A+K E KA+++ NV+ AR+YAENAIRK+ E +N+LR+ASR+DAV Sbjct: 13 KQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAV 72 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 S++ T M+ + K+M + K+LD +L++ +LQK+S MD FE Q N++V ME + Sbjct: 73 ASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDS 132 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQ--XXXXXXXXAXXXXXXXXXDLTRR 196 M+ +T+LSTP+ +V+ L+ Q+A++ GLEV L Q L+RR Sbjct: 133 MSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQEKEDQLSRR 192 Query: 195 LAELK 181 LA L+ Sbjct: 193 LAALR 197
>CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a| (Chromatin-modifying protein 1a) (CHMP1a) Length = 196 Score = 135 bits (341), Expect = 1e-31 Identities = 70/183 (38%), Positives = 114/183 (62%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K L++ A+K E KA+++ NV+ AR+YAENAIRK+ E +N+LR+ASR+DAV Sbjct: 13 KQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAV 72 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 S++ T M+ + K+M + K+LD +L++ +LQK+S MD F++Q N++V ME + Sbjct: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDS 132 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQXXXXXXXXAXXXXXXXXXDLTRRLA 190 M+ + +L+TP+ +V++L+ Q+A++ GLEV L Q L+RRLA Sbjct: 133 MSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQEDQLSRRLA 192 Query: 189 ELK 181 L+ Sbjct: 193 SLR 195
>DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged| multivesicular body protein 1) (DOA4-independent degradation protein 2) (Fifty two inhibitor 1) Length = 204 Score = 102 bits (255), Expect = 9e-22 Identities = 55/149 (36%), Positives = 86/149 (57%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 K LQ+QA K +A+ + N D +RIYA NAIRK+ E + L+LASR+D+V Sbjct: 21 KQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSV 79 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 SR+ T M+ + SMG + K +D +L NLQ+++ MD FE+QF +++ E Sbjct: 80 ASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDM 139 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEV 283 S ++ +V+ LM +VAD+ G+E+ Sbjct: 140 GVNSDAMLVDNDKVDELMSKVADENGMEL 168
>YDS1_SCHPO (O14177) Hypothetical protein C4F8.01 in chromosome I| Length = 210 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/154 (24%), Positives = 68/154 (44%) Frame = -1 Query: 729 KSLQRQARKCEXXXXXXXXXXXKAIEKGNVDGARIYAENAIRKRTEHMNYLRLASRLDAV 550 + L R+ K + + + GN ARI A + +R R + ++L A+ Sbjct: 30 RELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAI 89 Query: 549 VSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGA 370 RL T + + +SM + L + N+ M+ FER+ ME + E ++ Sbjct: 90 SLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDEN 149 Query: 369 MAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLP 268 M + E E + L+ +V D+ G+++S GLP Sbjct: 150 MDDALE-EDDEEEADELVNKVLDEIGVDLSQGLP 182
>CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/123 (21%), Positives = 60/123 (48%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN D R+ A+ ++ R + ++S++ ++ ++ + + +M K++ + Sbjct: 53 GNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B| (Chromatin-modifying protein 2b-B) (CHMP2b-B) Length = 214 Score = 53.5 bits (127), Expect = 6e-07 Identities = 27/123 (21%), Positives = 60/123 (48%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN D R+ A+ ++ R + ++S++ ++ ++ + + +M K++ + Sbjct: 53 GNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A| (Chromatin-modifying protein 2b-A) (CHMP2b-A) Length = 214 Score = 52.8 bits (125), Expect = 1e-06 Identities = 26/123 (21%), Positives = 60/123 (48%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN D ++ A+ ++ R + ++S++ ++ ++ + + +M K++ + Sbjct: 53 GNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 50.1 bits (118), Expect = 7e-06 Identities = 26/123 (21%), Positives = 58/123 (47%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN + R+ A+ + R + ++S++ ++ ++ + +M K++ + Sbjct: 53 GNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 50.1 bits (118), Expect = 7e-06 Identities = 26/123 (21%), Positives = 58/123 (47%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN + R+ A+ + R + ++S++ ++ ++ + +M K++ + Sbjct: 53 GNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 214 Score = 49.7 bits (117), Expect = 9e-06 Identities = 25/123 (20%), Positives = 59/123 (47%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN + ++ A+ ++ R + ++S++ ++ ++ + +M K++ + Sbjct: 53 GNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 48.9 bits (115), Expect = 2e-05 Identities = 25/123 (20%), Positives = 58/123 (47%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN + ++ A+ + R + ++S++ ++ ++ + +M K++ + Sbjct: 53 GNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2) Length = 213 Score = 48.9 bits (115), Expect = 2e-05 Identities = 25/123 (20%), Positives = 58/123 (47%) Frame = -1 Query: 648 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 469 GN + ++ A+ + R + ++S++ ++ ++ + +M K++ + Sbjct: 53 GNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112 Query: 468 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 289 + QK +TM NF+++ + ME+ E + + S E E ++ QV D+ G+ Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGI 172 Query: 288 EVS 280 E+S Sbjct: 173 EIS 175
>Y1053_ARCFU (O29209) Hypothetical protein AF1053| Length = 269 Score = 31.2 bits (69), Expect = 3.4 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Frame = -1 Query: 555 AVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKM----SETMDNFERQFVNMEVQA 388 A + + A+ + + K LD + G+++K+ ET++N E F N++ A Sbjct: 6 AAIDEILASAEADTAEGRIDRLEKELD--VLKGSVKKLLLDLRETLNNLENPFQNLQNLA 63 Query: 387 EFMEGAMAGSTSLSTPETEV 328 E GA+AG S P+ +V Sbjct: 64 E---GALAGGASYQPPQIQV 80
>DID4_YEAST (P36108) DOA4-independent degradation protein 4 (Vacuolar protein| sorting-associated protein VPS2) Length = 151 Score = 30.8 bits (68), Expect = 4.5 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Frame = -1 Query: 573 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 394 + ++L A+ R+ + +SM L T NL ++ FE+Q M Sbjct: 1 MKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQ 60 Query: 393 QAEFMEGAMAGSTSLSTPE-TEVNSLMQQVADDYGLEVS 280 + EFM+ A+ E E + ++ +V D+ G++++ Sbjct: 61 RQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLN 99
>ATM_DROME (Q5EAK6) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Telomere| fusion protein) Length = 2767 Score = 30.0 bits (66), Expect = 7.6 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = +2 Query: 275 PTETSRP*SSATCCMRELT--SVSG------VEREVEPAMAPSMNSAWTSMLTNWRSKLS 430 P E R S C R + S+SG + ++P M PSM+S SM T Sbjct: 1198 PQEMMRLFGSLAICNRTASWYSLSGESLFKCLNFHIDPEMRPSMDSRIQSMTTLQTKHSR 1257 Query: 431 MVSDIFWRLPVAREESSDLTMLPMDFPMACILA 529 ++ DIF RL +S + DF + C +A Sbjct: 1258 VLVDIFGRLKTNCYSASFSSQALHDFFLYCEVA 1290
>PRTP_EHV1V (Q6S6N9) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 465 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 313 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>PRTP_EHV1B (Q6DLH9) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 465 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 313 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>PRTP_EHV1 (P68351) Probable processing and transport protein| Length = 766 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = -1 Query: 465 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 313 AT L T+D+F+R F + + + ++G + GS ++S P+ + +L++ Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393
>RM43_MOUSE (Q99N89) 39S ribosomal protein L43, mitochondrial precursor (L43mt)| (MRP-L43) (Mitochondrial ribosomal protein bMRP36a) Length = 183 Score = 29.6 bits (65), Expect = 10.0 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 396 VQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEV 283 + AE++ GA+ S E+ SL+Q++AD GL+V Sbjct: 75 IVAEYLNGAVREENVNSKSVEEIKSLVQKLADQSGLDV 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,692,371 Number of Sequences: 219361 Number of extensions: 787553 Number of successful extensions: 2807 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2807 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
