ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26o08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009095.1| Triticum aestivum clone wkm2c.pk005.e4:fis, full ... 630 e-177
2dbj|AK120238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
3gb|AF264021.1| Poa secunda putative thiamine biosythesis protein... 151 3e-33
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 7e-31
5gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E... 143 7e-31
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
7dbj|AK068703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 7e-31
8dbj|AK065235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 7e-31
9ref|NM_179804.2| Arabidopsis thaliana catalytic AT2G29630 transc... 96 1e-16
10gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 ma... 96 1e-16
11gb|AE013167.1| Thermoanaerobacter tengcongensis MB4, section 194... 50 0.008
12gb|AE013127.1| Thermoanaerobacter tengcongensis MB4, section 154... 50 0.008
13gb|AE013112.1| Thermoanaerobacter tengcongensis MB4, section 139... 50 0.008
14dbj|D13323.1|STRREPRESP Streptococcus sobrinus par and pag genes... 50 0.008
15gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 48 0.031
16gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.49
17gb|AY543013.1| Bigelowiella natans folate receptor mRNA, complet... 44 0.49
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.49
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.49
20gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.49
21emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.49
22gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.49
23gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.9
24gb|AE004097.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 1.9
25emb|CR378663.1| Photobacterium profundum SS9; segment 1/12 42 1.9
26ref|NM_143769.3| Drosophila melanogaster lethal (2) 01289 CG9432... 42 1.9
27gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 1.9
28gb|AC008340.5| Drosophila melanogaster, chromosome 2R, region 42... 42 1.9
29gb|AF216975.1|AF216975 Drosophila melanogaster l(2)01289 H9 form... 42 1.9
30gb|AF216973.1|AF216973 Drosophila melanogaster l(2)01289 gene, c... 42 1.9
31gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 ... 42 1.9
32gb|BT001615.1| Drosophila melanogaster RE34119 full insert cDNA 42 1.9
33emb|AL732441.10| Mouse DNA sequence from clone RP23-142N2 on chr... 42 1.9
34gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, c... 40 7.6
35gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete s... 40 7.6
36emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in... 40 7.6
37emb|AL928717.5| Human DNA sequence from clone RP11-363G10 on chr... 40 7.6
38emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in... 40 7.6
39emb|BX664746.10| Zebrafish DNA sequence from clone DKEY-218P9 in... 40 7.6
40emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in ... 40 7.6
41gb|AC183493.1| Brassica oleracea Contig B, complete sequence 40 7.6
42gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.6
43gb|AC157504.2| Medicago truncatula chromosome 2 BAC clone mte1-6... 40 7.6
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.6
45ref|NM_064567.2| Caenorhabditis elegans Y48B6A.12 (Y48B6A.12) mR... 40 7.6
46gb|AC142116.2| Homo sapiens BAC clone RP11-1288H11 from 2, compl... 40 7.6
47gb|AC078931.9|AC078931 Mus musculus BAC RP23-419E4 (Roswell Par... 40 7.6
48gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Can... 40 7.6
49dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.6
50emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chro... 40 7.6
51emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in... 40 7.6
52gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 7.6
53gb|AC154189.2| Mus musculus BAC clone RP24-458A18 from 17, compl... 40 7.6
54emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, compl... 40 7.6
55emb|CT573013.7| Mouse DNA sequence from clone RP23-303A9 on chro... 40 7.6
56emb|AL773539.18| Mouse DNA sequence from clone RP23-9F18 on chro... 40 7.6
57emb|CT030713.5| Mouse DNA sequence from clone RP24-94C21 on chro... 40 7.6
58emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on ch... 40 7.6
59emb|AL118555.6|CNS01DRS Human chromosome 14 DNA sequence BAC C-2... 40 7.6
60emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chrom... 40 7.6 
>gb|BT009095.1| Triticum aestivum clone wkm2c.pk005.e4:fis, full insert mRNA sequence
          Length = 2406

 Score =  630 bits (318), Expect = e-177
 Identities = 366/382 (95%)
 Strand = Plus / Minus

                                                                        
Query: 180  atgggcttatgaagttggactaaactagccacacgtatgactaaattttatgtgttccat 239
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 atgggcttatgaagtttgactaaactagccacacgtatgactaaattttatgtgttccat 2135

                                                                        
Query: 240  gatgactaaattttatgtgttccatgataacactatgactgtaaatattctctcctcttg 299
            | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 2134 gttgactaaattttatgtgttccatggtaacactatgcctgtaaatattctctcctcttg 2075

                                                                        
Query: 300  gagaaatgccaatatgtatgctggttcaagaaatcgtgtacattaccatgttgcgtcaga 359
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2074 gagaaataccaatatgtatgctggttcaagaaatcgtgtacattaccatgttacttcaga 2015

                                                                        
Query: 360  gaaggaaacatgcatatccagtgggtgcgctccacacattcaggaaaacttggtccctcg 419
            | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 2014 gtaggaaacatgcatatccagtagatgcgctccacacattcaggaaaacttggtccctcg 1955

                                                                        
Query: 420  attcccagaatgtcgagggttgaatgtatcctgggaaacatgaaaatagaaatgcacact 479
            ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1954 atttccagaatgtcgagggttgagtgtatcctgggaaacatgaaaataaaaatgcacact 1895

                                                                        
Query: 480  cccttcgcaggcattatcctgttcaggttcaaagggactttctcagcccatatcgcaacg 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1894 cccttcgcaggcattatcctgttcaggttcaaagggactttctcagcccatatcgcaaca 1835

                                  
Query: 540  atccaggctaaggggccacctc 561
            |||||||| |||||| ||||||
Sbjct: 1834 atccaggccaaggggtcacctc 1813



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/83 (90%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 84   agaaatatgtacatggataggggtaaaaaggtaaaattacaccgggcattgtgaatgctt 143
            ||||||||||||| ||||||| ||||||||   ||||||||| || ||||||||||||||
Sbjct: 2284 agaaatatgtacaaggataggtgtaaaaagt--aaattacacaggacattgtgaatgctt 2227

                                   
Query: 144  tgcaagatgtaatgggattcctc 166
            ||| |||||||||||||||||||
Sbjct: 2226 tgcgagatgtaatgggattcctc 2204
to top
>dbj|AK120238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044A21, full
            insert sequence
          Length = 3285

 Score =  153 bits (77), Expect = 7e-34
 Identities = 101/109 (92%)
 Strand = Plus / Minus

                                                                        
Query: 453  ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 2133

                                                             
Query: 513  gggactttctcagcccatatcgcaacgatccaggctaaggggccacctc 561
            |||||||||||||||||  || |||| |||||||| ||| |||||||||
Sbjct: 2132 gggactttctcagcccaattcacaacaatccaggccaagaggccacctc 2084
to top
>gb|AF264021.1| Poa secunda putative thiamine biosythesis protein ThiC mRNA, complete
            cds
          Length = 2387

 Score =  151 bits (76), Expect = 3e-33
 Identities = 88/92 (95%)
 Strand = Plus / Minus

                                                                        
Query: 462  aaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaagggactttc 521
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2359 aaaatagaaatgcacactccctacgcaggcattatcctgttcaggttcaaagggactttc 2300

                                            
Query: 522  tcagcccatatcgcaacgatccaggctaaggg 553
            |||||||||||| |||| |||||||| |||||
Sbjct: 2299 tcagcccatatcacaacaatccaggccaaggg 2268
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                            
Query: 453      ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26666548 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 26666489

                                                            
Query: 513      gggactttctcagcccatatcgcaacgatccaggctaaggggcc 556
                |||||||||||||||||  || |||| |||||||| ||| ||||
Sbjct: 26666488 gggactttctcagcccaattcacaacaatccaggccaagaggcc 26666445



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gaaacatgaaaatagaaatg 473
               ||||||||||||||||||||
Sbjct: 9363171 gaaacatgaaaatagaaatg 9363190
to top
>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete
             sequence
          Length = 140044

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                         
Query: 453   ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
             |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91292 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 91351

                                                         
Query: 513   gggactttctcagcccatatcgcaacgatccaggctaaggggcc 556
             |||||||||||||||||  || |||| |||||||| ||| ||||
Sbjct: 91352 gggactttctcagcccaattcacaacaatccaggccaagaggcc 91395
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                            
Query: 453      ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26757871 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 26757812

                                                            
Query: 513      gggactttctcagcccatatcgcaacgatccaggctaaggggcc 556
                |||||||||||||||||  || |||| |||||||| ||| ||||
Sbjct: 26757811 gggactttctcagcccaattcacaacaatccaggccaagaggcc 26757768



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gaaacatgaaaatagaaatg 473
               ||||||||||||||||||||
Sbjct: 9361292 gaaacatgaaaatagaaatg 9361311
to top
>dbj|AK068703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159A12, full
            insert sequence
          Length = 3033

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                        
Query: 453  ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 2166

                                                        
Query: 513  gggactttctcagcccatatcgcaacgatccaggctaaggggcc 556
            |||||||||||||||||  || |||| |||||||| ||| ||||
Sbjct: 2165 gggactttctcagcccaattcacaacaatccaggccaagaggcc 2122
to top
>dbj|AK065235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H20, full
            insert sequence
          Length = 3301

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                        
Query: 453  ggaaacatgaaaatagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 512
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 ggaaacataaaagtagaaatgcacactcccttcgcaggcattatcctgttcaggttcaaa 2172

                                                        
Query: 513  gggactttctcagcccatatcgcaacgatccaggctaaggggcc 556
            |||||||||||||||||  || |||| |||||||| ||| ||||
Sbjct: 2171 gggactttctcagcccaattcacaacaatccaggccaagaggcc 2128
to top
>ref|NM_179804.2| Arabidopsis thaliana catalytic AT2G29630 transcript variant
            AT2G29630.2 mRNA, complete cds
          Length = 2435

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                    
Query: 472  tgcacactcccttcgcaggcattatcctgttcaggttcaaagggactttctcagcc 527
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2215 tgcacactccctgcgcaggcattaccctgttcaggttcaaagggactttctcagcc 2160
to top
>gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete
             sequence
          Length = 90665

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                     
Query: 472   tgcacactcccttcgcaggcattatcctgttcaggttcaaagggactttctcagcc 527
             |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 78509 tgcacactccctgcgcaggcattaccctgttcaggttcaaagggactttctcagcc 78564
to top
>gb|AE013167.1| Thermoanaerobacter tengcongensis MB4, section 194 of 244 of the
             complete genome
          Length = 14498

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 479   tcccttcgcaggcattatcctgttcaggttcaaaggg 515
             ||||||||||||||||| |||| |||||||| |||||
Sbjct: 14323 tcccttcgcaggcattaccctggtcaggttctaaggg 14359
to top
>gb|AE013127.1| Thermoanaerobacter tengcongensis MB4, section 154 of 244 of the
            complete genome
          Length = 10370

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 479  tcccttcgcaggcattatcctgttcaggttcaaaggg 515
            ||||||||||||||||| |||| |||||||| |||||
Sbjct: 3206 tcccttcgcaggcattaccctggtcaggttctaaggg 3242
to top
>gb|AE013112.1| Thermoanaerobacter tengcongensis MB4, section 139 of 244 of the
            complete genome
          Length = 11948

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 479  tcccttcgcaggcattatcctgttcaggttcaaaggg 515
            ||||||||||||||||| |||| |||||||| |||||
Sbjct: 9273 tcccttcgcaggcattaccctggtcaggttctaaggg 9309
to top
>dbj|D13323.1|STRREPRESP Streptococcus sobrinus par and pag genes for repressor protein and
            surface protein antigen PAg, complete and partial cds
          Length = 2853

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 485  cgcaggcattatcctgttcaggttcaaag 513
            ||||||||||| |||||||||||||||||
Sbjct: 2544 cgcaggcattaccctgttcaggttcaaag 2572
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 502     tcaggttcaaagggactttctcag 525
               ||||||||||||||||||||||||
Sbjct: 2711036 tcaggttcaaagggactttctcag 2711013
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 1285172 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 1285217
to top
>gb|AY543013.1| Bigelowiella natans folate receptor mRNA, complete cds
          Length = 1529

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 479  tcccttcgcaggcattatcctgttcaggttcaaa 512
            |||||||||||| |||| |||| |||||||||||
Sbjct: 1173 tcccttcgcaggaattaccctgatcaggttcaaa 1140
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 3183843 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 3183798
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 1616993 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 1617038
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 3314091 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 3314046
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 1504135 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 1504180
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaagggactttctca 524
               ||||| ||| |||||||||| | ||||||||||||||  |||||||
Sbjct: 3261304 tccctgcgctggcattatccagatcaggttcaaagggtatttctca 3261259
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 479     tcccttcgcaggcattatcctgttcaggttcaaaggg 515
               ||||| ||| |||||||||| | ||||||||||||||
Sbjct: 3319681 tccctacgccggcattatccggatcaggttcaaaggg 3319645
to top
>gb|AE004097.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 5
            of 251 of the complete chromosome
          Length = 10632

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 479  tcccttcgcaggcattatcctgttcaggttcaa 511
            |||||||||||| |||| |||| ||||||||||
Sbjct: 4261 tcccttcgcaggtattaacctgatcaggttcaa 4229
to top
>emb|CR378663.1| Photobacterium profundum SS9; segment 1/12
          Length = 348044

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 479    tcccttcgcaggcattatcctgttcaggttcaa 511
              |||||||||||| |||| |||| ||||||||||
Sbjct: 106700 tcccttcgcaggtattagcctgatcaggttcaa 106668
to top
>ref|NM_143769.3| Drosophila melanogaster lethal (2) 01289 CG9432-RA, transcript
            variant A (l(2)01289), mRNA
          Length = 4420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   tacaaaccattccaatgctgt 54
            |||||||||||||||||||||
Sbjct: 2523 tacaaaccattccaatgctgt 2543
to top
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 479    tcccttcgcaggcattatcctgttcaggttcaa 511
              |||||||||||| |||| |||| ||||||||||
Sbjct: 821620 tcccttcgcaggtattagcctgatcaggttcaa 821588
to top
>gb|AC008340.5| Drosophila melanogaster, chromosome 2R, region 42D-42E, BAC clone
             BACR07J20, complete sequence
          Length = 181771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    tacaaaccattccaatgctgt 54
             |||||||||||||||||||||
Sbjct: 22560 tacaaaccattccaatgctgt 22540
to top
>gb|AF216975.1|AF216975 Drosophila melanogaster l(2)01289 H9 form mRNA, complete cds
          Length = 4127

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   tacaaaccattccaatgctgt 54
            |||||||||||||||||||||
Sbjct: 2211 tacaaaccattccaatgctgt 2231
to top
>gb|AF216973.1|AF216973 Drosophila melanogaster l(2)01289 gene, complete cds, alternatively
             spliced products
          Length = 20796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    tacaaaccattccaatgctgt 54
             |||||||||||||||||||||
Sbjct: 12514 tacaaaccattccaatgctgt 12534
to top
>gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 of 73 of the complete
             sequence
          Length = 348873

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    tacaaaccattccaatgctgt 54
             |||||||||||||||||||||
Sbjct: 58771 tacaaaccattccaatgctgt 58751
to top
>gb|BT001615.1| Drosophila melanogaster RE34119 full insert cDNA
          Length = 4449

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   tacaaaccattccaatgctgt 54
            |||||||||||||||||||||
Sbjct: 2547 tacaaaccattccaatgctgt 2567
to top
>emb|AL732441.10| Mouse DNA sequence from clone RP23-142N2 on chromosome 2, complete
             sequence
          Length = 194006

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 10    ttgttctgaaagacaagtggcatgt 34
             ||||||||||| |||||||||||||
Sbjct: 52503 ttgttctgaaatacaagtggcatgt 52479
to top
>gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, complete sequence
          Length = 178668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    ggaaacatgaaaatagaaat 472
              ||||||||||||||||||||
Sbjct: 117278 ggaaacatgaaaatagaaat 117259
to top
>gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete sequence
          Length = 144306

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   taggggtaaaaaggtaaaat 120
             ||||||||||||||||||||
Sbjct: 60452 taggggtaaaaaggtaaaat 60471
to top
>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8,
             complete sequence
          Length = 215608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tctgaaagacaagtggcatgtaca 37
             |||||||||||| |||||||||||
Sbjct: 95447 tctgaaagacaaatggcatgtaca 95424
to top
>emb|AL928717.5| Human DNA sequence from clone RP11-363G10 on chromosome X Contains the
              gene for family D 4 melanoma antigen (MAGED4) (KIAA1859,
              DKFZp761N1924, FLJ37222, FLJ25964), gene LOC349420
              (FLJ39060) and a CpG island, complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     acatcttctactatgctacagaaa 88
              |||||||||||| |||||||||||
Sbjct: 158770 acatcttctactgtgctacagaaa 158793
to top
>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7
             Contains a novel gene similar to PPP1R14B (protein
             phosphatase 1, regulatory (inhibitor) subunit 14B), a
             novel gene similar to BRMS1 (breast cancer
             metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate
             carboxylase and three putative novel retrotransposons,
             complete sequence
          Length = 192531

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   atgataacactatgactgta 282
             ||||||||||||||||||||
Sbjct: 77939 atgataacactatgactgta 77920
to top
>emb|BX664746.10| Zebrafish DNA sequence from clone DKEY-218P9 in linkage group 8,
             complete sequence
          Length = 106404

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tctgaaagacaagtggcatgtaca 37
             |||||||||||| |||||||||||
Sbjct: 76574 tctgaaagacaaatggcatgtaca 76551
to top
>emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in linkage group 23,
              complete sequence
          Length = 237446

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 301    agaaatgccaatatgtatgctggt 324
              |||||||||| |||||||||||||
Sbjct: 106595 agaaatgccactatgtatgctggt 106572
to top
>gb|AC183493.1| Brassica oleracea Contig B, complete sequence
          Length = 284024

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ataggggtaaaaaggtaaaa 119
             ||||||||||||||||||||
Sbjct: 78799 ataggggtaaaaaggtaaaa 78818
to top
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gaaacatgaaaatagaaatg 473
             ||||||||||||||||||||
Sbjct: 60571 gaaacatgaaaatagaaatg 60590
to top
>gb|AC157504.2| Medicago truncatula chromosome 2 BAC clone mte1-65n19, complete
             sequence
          Length = 106635

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   atgatgactaaattttatgt 257
             ||||||||||||||||||||
Sbjct: 63873 atgatgactaaattttatgt 63854
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     tcttggagaaatgccaatat 314
               ||||||||||||||||||||
Sbjct: 3391930 tcttggagaaatgccaatat 3391949
to top
>ref|NM_064567.2| Caenorhabditis elegans Y48B6A.12 (Y48B6A.12) mRNA, complete cds
          Length = 2232

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  taggggtaaaaaggtaaaat 120
            ||||||||||||||||||||
Sbjct: 2154 taggggtaaaaaggtaaaat 2135
to top
>gb|AC142116.2| Homo sapiens BAC clone RP11-1288H11 from 2, complete sequence
          Length = 21376

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   acacattcaggaaaacttgg 412
             ||||||||||||||||||||
Sbjct: 13159 acacattcaggaaaacttgg 13178
to top
>gb|AC078931.9|AC078931 Mus musculus  BAC RP23-419E4 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 188750

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctggtgcttttgttctgaaa 20
              ||||||||||||||||||||
Sbjct: 106454 ctggtgcttttgttctgaaa 106473
to top
>gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   tgtaaatattctctcctctt 298
             ||||||||||||||||||||
Sbjct: 39859 tgtaaatattctctcctctt 39878
to top
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 492     attatcctgttcaggttcaa 511
               ||||||||||||||||||||
Sbjct: 1440448 attatcctgttcaggttcaa 1440429
to top
>emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete
             sequence
          Length = 163576

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 439   ttgaatgtatcctgggaaacatga 462
             ||||||||| ||||||||||||||
Sbjct: 11074 ttgaatgtagcctgggaaacatga 11051
to top
>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20,
             complete sequence
          Length = 107263

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   atgataacactatgactgta 282
             ||||||||||||||||||||
Sbjct: 78034 atgataacactatgactgta 78053
to top
>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    actatgactgtaaatattct 290
              ||||||||||||||||||||
Sbjct: 129227 actatgactgtaaatattct 129246
to top
>gb|AC154189.2| Mus musculus BAC clone RP24-458A18 from 17, complete sequence
          Length = 175733

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctggtgcttttgttctgaaa 20
             ||||||||||||||||||||
Sbjct: 60489 ctggtgcttttgttctgaaa 60508
to top
>emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, complete sequence
          Length = 101295

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   taggggtaaaaaggtaaaat 120
             ||||||||||||||||||||
Sbjct: 76134 taggggtaaaaaggtaaaat 76153
to top
>emb|CT573013.7| Mouse DNA sequence from clone RP23-303A9 on chromosome 17, complete
             sequence
          Length = 109475

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctggtgcttttgttctgaaa 20
             ||||||||||||||||||||
Sbjct: 42543 ctggtgcttttgttctgaaa 42524
to top
>emb|AL773539.18| Mouse DNA sequence from clone RP23-9F18 on chromosome 4, complete
              sequence
          Length = 182206

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    acatgaaaatagaaatgcac 476
              ||||||||||||||||||||
Sbjct: 174991 acatgaaaatagaaatgcac 175010
to top
>emb|CT030713.5| Mouse DNA sequence from clone RP24-94C21 on chromosome 17, complete
              sequence
          Length = 190764

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctggtgcttttgttctgaaa 20
              ||||||||||||||||||||
Sbjct: 188689 ctggtgcttttgttctgaaa 188708
to top
>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete
             sequence
          Length = 179370

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   taaaaaggtaaaattacacc 126
             ||||||||||||||||||||
Sbjct: 70010 taaaaaggtaaaattacacc 70029
to top
>emb|AL118555.6|CNS01DRS Human chromosome 14 DNA sequence BAC C-2011M8 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 122552

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tatgactgtaaatattctct 292
             ||||||||||||||||||||
Sbjct: 67390 tatgactgtaaatattctct 67371
to top
>emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chromosome 2, complete
             sequence
          Length = 219076

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   gggaaacatgaaaatagaaa 471
             ||||||||||||||||||||
Sbjct: 16465 gggaaacatgaaaatagaaa 16446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,556,361
Number of Sequences: 3902068
Number of extensions: 5556361
Number of successful extensions: 104309
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104009
Number of HSP's gapped (non-prelim): 297
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top