ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26o07 |
|---|---|
| Clone Library Name | barley_pub |
>NUPL1_HUMAN (Q9BVL2) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 599 Score = 33.9 bits (76), Expect = 0.43 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 12/88 (13%) Frame = -1 Query: 616 LGSLPQPASMLSNYVGGFGTANGM------PQNFALNQSN-PSATTAPGFDGTMPSQYKD 458 +G+ Q + + S+ +GGFGT++G F +N PS + + GF + S + Sbjct: 496 IGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNF 555 Query: 457 GNPYISLQQG-----ENPAMWMHGAGSR 389 NP I+ G NPA G G + Sbjct: 556 SNPGITASAGLTFGVSNPASAGFGTGGQ 583
>MISS_MOUSE (Q9D7G9) MAPK-interacting and spindle-stabilizing protein| (Mitogen-activated protein kinase 1-interacting protein 1) Length = 263 Score = 32.3 bits (72), Expect = 1.3 Identities = 26/86 (30%), Positives = 36/86 (41%) Frame = -1 Query: 628 SNVPLGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPSATTAPGFDGTMPSQYKDGNP 449 +NVP LP+P S ++ VG GT M S APG G P+ P Sbjct: 49 TNVPFPELPRPNSAPTDPVGPLGTQGSM----------SSGPWAPGMGGQHPNV-----P 93 Query: 448 YISLQQGENPAMWMHGAGSRGMPPLA 371 Y+ + P + + GA PP+A Sbjct: 94 YLFPESSPTPPLPVSGA-----PPVA 114
>NUPL1_RAT (P70581) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 585 Score = 32.0 bits (71), Expect = 1.6 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%) Frame = -1 Query: 616 LGSLPQPASMLSNYVGGFGTANGM------PQNFALNQSN-PSATTAPGFDGTMPSQYKD 458 +G+ Q + + S+ +GGFGT++G F ++ PS + + GF + S + Sbjct: 482 IGTGLQSSGLGSSNLGGFGTSSGFGCGTTGASTFGFGTTDKPSGSLSAGFGSSSTSGFNF 541 Query: 457 GNPYISLQQG-----ENPAMWMHGAGSR 389 NP I+ G NPA G G + Sbjct: 542 SNPGITASAGLTFGVSNPASAGFGTGGQ 569
>NUPL1_MOUSE (Q8R332) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 587 Score = 32.0 bits (71), Expect = 1.6 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%) Frame = -1 Query: 616 LGSLPQPASMLSNYVGGFGTANGM------PQNFALNQSN-PSATTAPGFDGTMPSQYKD 458 +G+ Q + + S+ +GGFGT++G F ++ PS + + GF + S + Sbjct: 484 IGTGLQSSGLGSSNLGGFGTSSGFGCGTTGASTFGFGTTDKPSGSLSAGFGSSSTSGFNF 543 Query: 457 GNPYISLQQG-----ENPAMWMHGAGSR 389 NP I+ G NPA G G + Sbjct: 544 SNPGITASAGLTFGVSNPASAGFGTGGQ 571
>YAAA_SCHPO (Q09801) Hypothetical protein C22G7.10 in chromosome I| Length = 344 Score = 31.6 bits (70), Expect = 2.1 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 18/105 (17%) Frame = -1 Query: 643 MPQYKSNVPLGSLPQPAS----MLSNY---------VGGFGTANGMPQNFALNQSNPSAT 503 + Q +P G++P PA M S + +GG G +NF ++ S+ T Sbjct: 174 LAQIPGPLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGGPQEDMGYSRNFPVHASSNYNT 233 Query: 502 TAPGFDGT-----MPSQYKDGNPYISLQQGENPAMWMHGAGSRGM 383 T G P+ Y + NP S ++ E+PA + S GM Sbjct: 234 THTSGGGVHSGAATPNAYVNNNPSSSRRESESPANSPNITSSAGM 278
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 30.8 bits (68), Expect = 3.6 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 12/110 (10%) Frame = -1 Query: 652 KYPMPQY-KSNVPLGSLPQPASMLSNYVGGFGTANGMPQN----------FALNQSNPSA 506 K P P K+ P+ P +L V G ++ G P+ FA QS Sbjct: 712 KTPPPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGTPEPPRLQGRGGELFAKRQSRADR 771 Query: 505 TTAPGFDGT-MPSQYKDGNPYISLQQGENPAMWMHGAGSRGMPPLAANPL 359 G G + + + +P SL P W + R PP+A NPL Sbjct: 772 YVVEGTPGPGLGPRPRSPSPTPSL-----PPSWKYSPNIRAPPPIAYNPL 816
>NCOA2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional| intermediary factor 2) Length = 1465 Score = 30.4 bits (67), Expect = 4.8 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = -1 Query: 649 YPM--PQYKSNVPLGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPSATTAPGFDGTM 476 +PM P+ + ++P+G M N+V G N+AL ++PS ++PG + Sbjct: 425 FPMNGPREQMSMPMGRFGGSGGM--NHVSGMQATTPQGSNYALKMNSPS-QSSPGLNPGQ 481 Query: 475 PSQYKDGNPYISLQQGENPAMWMHGAGSRGMPPLAANP 362 PS +S + +P + AGS +PP +P Sbjct: 482 PSS------VLSPRHRMSPGV----AGSPRVPPSQFSP 509
>CBP1_ORYSA (P37890) Serine carboxypeptidase 1 precursor (EC 3.4.16.5) (Serine| carboxypeptidase I) (Carboxypeptidase C) Length = 510 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -1 Query: 610 SLPQPASMLSNYV----GGFGTANGMPQNFALNQSNPSATTAPGFDGTMPSQYKDGNPYI 443 SL PA ++ +V GG G G+ + ++ + PGFDG +PS++ G + Sbjct: 8 SLASPAVAIALFVFLAYGGGGGGGGVCE---AAPASAVVKSVPGFDGALPSKHYAGYVTV 64 Query: 442 SLQQGEN 422 Q G N Sbjct: 65 EEQHGRN 71
>UBR11_SCHPO (O13731) Ubiquitin-protein ligase E3 component N-recognin-11 (EC| 6.-.-.-) (N-end-recognizing protein 11) Length = 2052 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 163 PNGY*FSPSLSGVLNRDIELVATVKFWKEAREMCSGMF 50 P+ Y F S S +L D L+ +KFWK R + S ++ Sbjct: 580 PSSYSFVESPSSILRLDYFLLFDLKFWKRLRGLLSKLY 617
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 30.0 bits (66), Expect = 6.2 Identities = 25/85 (29%), Positives = 33/85 (38%) Frame = -1 Query: 616 LGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPSATTAPGFDGTMPSQYKDGNPYISL 437 + SLP P + ++ Y G GMPQ N P+A AP + MP PY + Sbjct: 118 VSSLPYPTAPMAPYPTGMPYPTGMPQP---NLPYPAAPLAP-YPSAMPGLPGMPMPYAPM 173 Query: 436 QQGENPAMWMHGAGSRGMPPLAANP 362 P H G +P A P Sbjct: 174 PTSPAP---QHNIGFPALPYPTAPP 195
>HGS_RAT (Q9JJ50) Hepatocyte growth factor-regulated tyrosine kinase| substrate (SNAP-25-interacting protein Hrs-2) Length = 776 Score = 30.0 bits (66), Expect = 6.2 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Frame = -1 Query: 646 PMPQYKSNVPLGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPS--ATTAPGFDGTMP 473 P P Y++ PA G P + N TT PG D ++P Sbjct: 666 PTPGYQNVASQAPQSLPAISQPPQTSNIGYMGSQPMSMGYQPYNMQNLMTTLPGQDASLP 725 Query: 472 SQYKDGNPYISLQQGENPAMWMHGAGSRGMPPLAANP 362 +Q PYI+ QQ M + PP+A P Sbjct: 726 AQ----QPYITGQQPMYQQMAPSTGPPQQQPPVAQPP 758
>HGS_HUMAN (O14964) Hepatocyte growth factor-regulated tyrosine kinase| substrate (Protein pp110) (Hrs) Length = 777 Score = 30.0 bits (66), Expect = 6.2 Identities = 28/92 (30%), Positives = 37/92 (40%) Frame = -1 Query: 637 QYKSNVPLGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPSATTAPGFDGTMPSQYKD 458 Q ++P S P P S Y+G + G N N TT P D ++P Q Sbjct: 677 QAPQSLPAISQP-PQSSTMGYMGSQSVSMGYQP---YNMQN-LMTTLPSQDASLPPQ--- 728 Query: 457 GNPYISLQQGENPAMWMHGAGSRGMPPLAANP 362 PYI+ QQ M G + PP+A P Sbjct: 729 -QPYIAGQQPMYQQMAPSGGPPQQQPPVAQQP 759
>ACSA_STRCO (Q9X928) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 651 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -3 Query: 485 WNNALPIQ-GWKSLHLSSAGREPCNVDAWSWFARNAASCCQPLV 357 W + +P + SL + + EP N +AW W+ +N + P+V Sbjct: 368 WGDDIPAKFDLSSLRVLGSVGEPINPEAWIWYRKNIGADATPVV 411
>NCOA2_MOUSE (Q61026) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional| intermediary factor 2) (Glucocorticoid receptor-interacting protein 1) (GRIP-1) Length = 1462 Score = 29.6 bits (65), Expect = 8.1 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = -1 Query: 649 YPM--PQYKSNVPLGSLPQPASMLSNYVGGFGTANGMPQNFALNQSNPSATTAPGFDGTM 476 +PM P+ + +P+G M N+V G N+AL ++PS ++PG + Sbjct: 425 FPMNGPKEQMGMPMGRFGGSGGM--NHVSGMQATTPQGSNYALKMNSPS-QSSPGMN--- 478 Query: 475 PSQYKDGNPYISLQQGENPAMWMHGAGSRGMPPLAANP 362 P Q + +S +Q +P + AGS +PP +P Sbjct: 479 PGQ---ASSVLSPRQRMSPGV----AGSPRIPPSQFSP 509 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,005,219 Number of Sequences: 219361 Number of extensions: 2102588 Number of successful extensions: 5766 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5763 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
