ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26o06 |
|---|---|
| Clone Library Name | barley_pub |
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 76.6 bits (187), Expect = 5e-14 Identities = 36/78 (46%), Positives = 53/78 (67%) Frame = -3 Query: 612 KRLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKL 433 KR+A LL LS+ E+E +S++V +K + AK+DR GI++F+ +D N +LN W+ L L Sbjct: 375 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 434 Query: 432 LDLVEKSCHQIHKETMIH 379 + LV K+ H I KE MIH Sbjct: 435 MSLVNKTTHLIAKEEMIH 452
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 76.6 bits (187), Expect = 5e-14 Identities = 36/78 (46%), Positives = 53/78 (67%) Frame = -3 Query: 612 KRLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKL 433 KR+A LL LS+ E+E +S++V +K + AK+DR GI++F+ +D N +LN W+ L L Sbjct: 375 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 434 Query: 432 LDLVEKSCHQIHKETMIH 379 + LV K+ H I KE MIH Sbjct: 435 MSLVNKTTHLIAKEEMIH 452
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 76.3 bits (186), Expect = 7e-14 Identities = 35/78 (44%), Positives = 53/78 (67%) Frame = -3 Query: 612 KRLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKL 433 KR+A LL LS+ E+E +S++V +K + AK+DR G+++F+ +D N +LN W+ L L Sbjct: 375 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSL 434 Query: 432 LDLVEKSCHQIHKETMIH 379 + LV K+ H I KE MIH Sbjct: 435 MSLVNKTTHLIAKEEMIH 452
>RPN5_YEAST (Q12250) 26S proteasome regulatory subunit RPN5 (Proteasome| non-ATPase subunit 5) Length = 445 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/77 (40%), Positives = 52/77 (67%) Frame = -3 Query: 609 RLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLL 430 RL +LL L+ + E +ISD+VN + AK++RP IV+F ++S+ +LN W+ N+++LL Sbjct: 364 RLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELL 423 Query: 429 DLVEKSCHQIHKETMIH 379 + +E H I KE ++H Sbjct: 424 EHIETIGHLITKEEIMH 440
>RPN5_SCHPO (Q9UTM3) 26S proteasome regulatory subunit rpn5| Length = 443 Score = 57.0 bits (136), Expect = 4e-08 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Frame = -3 Query: 609 RLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLL 430 RL LL +S E E+ + D++ AKIDRP ++SF+ +Q+ LN W SN+ +LL Sbjct: 359 RLGVLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELL 418 Query: 429 DLVEKSCHQIHKETM---IHKAVLK 364 +EK I KE M I +AV K Sbjct: 419 GKLEKVRQLIIKEEMMNSIQQAVAK 443
>L_RINDR (P41357) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 33.1 bits (74), Expect = 0.66 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +1 Query: 268 LFYPSSDSEFRS-IESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQEL 438 LF+ + +E RS I+S+ HT++ R + +FSG ++ R LV +V LH V L Sbjct: 166 LFWFTIKTEMRSTIKSSVHTSHRRRYVPSFFSGDSFEILISRDLVAIVHRRLHHVYYL 223
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = +3 Query: 504 SPLVCRSLQSRPLSSPCPRYASLPPASSGKE--DPP 605 S +V +S+ ++P SSP PRY S+PP+ S E PP Sbjct: 1002 SAVVPKSILAKPSSSPDPRYLSVPPSPSISESRSPP 1037
>YR161_MIMIV (Q7T6X0) Hypothetical protein R161| Length = 433 Score = 32.7 bits (73), Expect = 0.87 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +1 Query: 145 NNVQKNT-ANSIRHSLWLQYLKTGSHTRVPKANRRCSHLSGELFYPSSDSEFRSIESTTH 321 N+ +KN+ ANS+ L+Y K T +P N+ P+ D+ + Sbjct: 191 NSFEKNSEANSVNKITPLKYPKVYEDTNIPLTNKE----------PNKDASTLEKQKNLR 240 Query: 322 TTYTRPFSSKWFSGFQHRLVDHRLLVYL 405 T Y + F +K ++ ++ + + +LL+ L Sbjct: 241 TDYLKYFLNKLYNSYKDKNIKSKLLLEL 268
>CD1D1_MOUSE (P11609) T-cell surface glycoprotein CD1d1 precursor (CD1.1| antigen) Length = 336 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +1 Query: 235 ANRRCSHLSGELFYPSSDSEFRSIESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAA 414 ANR S ++ + S +S T ++T+P+S S Q + H VY V+ Sbjct: 37 ANRSWSRTDSVVWLGDLQTHRWSNDSAT-ISFTKPWSQGKLSNQQWEKLQHMFQVYRVS- 94 Query: 415 LLHQVQELLQVRRPRVEHPVAV 480 +QEL+++ P+ ++P+ + Sbjct: 95 FTRDIQELVKMMSPKEDYPIEI 116
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%) Frame = +3 Query: 504 SPLVCRSLQSRPLSSPCPRYASLPP----ASSGKEDPP 605 S +V +S+ ++P SSP PRY S+PP ++S PP Sbjct: 1005 SVMVPKSILAKPSSSPDPRYLSVPPSPNISTSESRSPP 1042
>DPOLZ_HUMAN (O60673) DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3)| Length = 3130 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 52 KHISQQANH*LGLSSDEQISPGSQEWIPKNTNNVQKNTANSI 177 K+I +NH ++ + QIS G I N NN+Q+N +SI Sbjct: 1356 KNIFDLSNHLSQVAQNTQISSGMSSKIEDNANNIQRNYLSSI 1397
>CD1D2_MOUSE (P11610) T-cell surface glycoprotein CD1d2 precursor (CD1.2| antigen) Length = 336 Score = 30.8 bits (68), Expect = 3.3 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = +1 Query: 325 TYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQELLQVRRPRVEHPVAV 480 ++T+P+S S Q + H VY V+ +QEL+++ P+ ++P+ + Sbjct: 66 SFTKPWSQGKLSNQQWEKLQHMFQVYRVS-FTRDIQELVKMMSPKEDYPIEI 116
>YCX7_CHLRE (P36495) 232.2 kDa protein (ORF1995) (ORF-S) (ORFA)| Length = 1995 Score = 30.8 bits (68), Expect = 3.3 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +1 Query: 118 SQEWIPKNTNNVQKNTANSIRHSLWLQYLKTGSHTRVPKANRRCSHLS 261 +Q ++PK TNNVQ N+ +++W + ++ RR LS Sbjct: 1316 NQAYLPKETNNVQFNSFVDSNNNVWQTFFAKKLRKKISSKGRRYRSLS 1363
>GUNS_CLOTM (P38686) Endoglucanase SS precursor (EC 3.2.1.4) (EGSS)| (Endo-1,4-beta-glucanase) (Cellulase SS) Length = 741 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/88 (25%), Positives = 39/88 (44%) Frame = +1 Query: 106 ISPGSQEWIPKNTNNVQKNTANSIRHSLWLQYLKTGSHTRVPKANRRCSHLSGELFYPSS 285 +S ++ PK++N + T + R + Q+L++ A + + YP+ Sbjct: 359 VSATQSDFAPKSSNGKRDWTTSYKRQLEFYQWLQSAEGGIAGGATNSWNGRYEK--YPAG 416 Query: 286 DSEFRSIESTTHTTYTRPFSSKWFSGFQ 369 S F + H Y P S++WF GFQ Sbjct: 417 TSTFYGMAYVPHPVYADPGSNQWF-GFQ 443
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = -3 Query: 612 KRLADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKL 433 K+LADL LS ++ IS M+ + L A +D P + + S L A NL Sbjct: 762 KKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSR--LQMLALNLSDK 819 Query: 432 LDLVEKSCHQI 400 L + ++ QI Sbjct: 820 LQTLAENNEQI 830
>IF36_MOUSE (P60229) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) (eIF3e) (Mammary tumor-associated protein INT-6) (Viral integration site protein INT-6) (MMTV integration site 6) Length = 445 Score = 29.3 bits (64), Expect = 9.6 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = -3 Query: 606 LADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLLD 427 LAD L ++ +EAE+ I +++ + L AKID +G V N ++ + +EK Sbjct: 356 LADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVM-----GNNAVSPYQQVIEKTKS 410 Query: 426 LVEKS 412 L +S Sbjct: 411 LSFRS 415
>IF36_HUMAN (P60228) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) (eIF3e) (Viral integration site protein INT-6 homolog) Length = 445 Score = 29.3 bits (64), Expect = 9.6 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = -3 Query: 606 LADLLCLSLQEAEKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLLD 427 LAD L ++ +EAE+ I +++ + L AKID +G V N ++ + +EK Sbjct: 356 LADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVM-----GNNAVSPYQQVIEKTKS 410 Query: 426 LVEKS 412 L +S Sbjct: 411 LSFRS 415
>UTMP_SHEEP (P21814) Uterine milk protein precursor (UTMP)| Length = 429 Score = 29.3 bits (64), Expect = 9.6 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -3 Query: 567 KHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLLDL-VEKSCHQIHKE 391 KH+ +N K L+ KID + + TA + L + NLE L + +E S H + + Sbjct: 320 KHLLPKINLKHLLPKIDPKHTLTT--TASSQHVTLKAPLPNLEALHQVEIELSEHALTTD 377 Query: 390 TMIH 379 T IH Sbjct: 378 TAIH 381
>EFTS_CLOTE (Q895L1) Elongation factor Ts (EF-Ts)| Length = 304 Score = 29.3 bits (64), Expect = 9.6 Identities = 22/69 (31%), Positives = 32/69 (46%) Frame = -3 Query: 570 EKHISDMVNSKALIAKIDRPMGIVSFRTAQDSNGVLNSWASNLEKLLDLVEKSCHQIHKE 391 E I D V AL+AK+ M + F+ NG++ S+ K+ LVE C KE Sbjct: 121 EGTIKDAVT--ALVAKLGENMSVRRFKQLSVENGIIESYIHGDGKIGVLVELEC---EKE 175 Query: 390 TMIHKAVLK 364 + + V K Sbjct: 176 SEVLSEVAK 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,138,504 Number of Sequences: 219361 Number of extensions: 1688897 Number of successful extensions: 5330 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5329 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
