ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 620 e-174
2dbj|AK121797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 149 2e-32
4dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 149 2e-32
5dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic D... 149 2e-32
6ref|XM_472987.1| Oryza sativa (japonica cultivar-group), predic... 58 4e-05
7emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 58 4e-05
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
9dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
10dbj|AK104854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
11dbj|AK066522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
12emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 58 4e-05
13gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete s... 50 0.011
14ref|NM_124150.2| Arabidopsis thaliana ATPK5; phosphoglycolate ph... 46 0.17
15emb|BX826485.1|CNS0A467 Arabidopsis thaliana Full-length cDNA Co... 46 0.17
16gb|BT005294.1| Arabidopsis thaliana At5g47760 mRNA, complete cds 46 0.17
17gb|AY087611.1| Arabidopsis thaliana clone 37055 mRNA, complete s... 46 0.17
18dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.17
19dbj|D10909.1|ATHPK5 Arabidopsis thaliana gene for serine/threoni... 46 0.17
20dbj|AK118640.1| Arabidopsis thaliana At5g47760 mRNA for putative... 46 0.17
21gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 46 0.17
22gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, comple... 44 0.68
23gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Ca... 44 0.68
24gb|AC082651.6| Homo sapiens BAC clone RP11-521D12 from 2, comple... 42 2.7
25gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 42 2.7 
>dbj|AK059648.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C04, full
           insert sequence
          Length = 1305

 Score =  620 bits (313), Expect = e-174
 Identities = 406/437 (92%)
 Strand = Plus / Minus

                                                                       
Query: 322 aacaacaatgggctctttctgcaccgagcaacttactgcagcaaccatagttccagctcc 381
           |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 733 aacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcc 674

                                                                       
Query: 382 tggccattcttgggcggatgtcatatgtccagtaggatcacggttggtcgcaatgaaaag 441
           ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 673 tggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaaag 614

                                                                       
Query: 442 gcagcctggattctcacgaatacataagcttgcatactgcattttgtaatagttgaagta 501
            ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 613 acagcctggattctcacgaatacacaagctcgcatactgcattttgtagtagttgaagta 554

                                                                       
Query: 502 ctgatcaagtccaacaatgacggctccaacacttttgtcgtgatcaaagtagaagttcgc 561
           ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 553 ctgatcaagtccaacaatgacagctccaacacttttgtcatgttcaaagtagaagtttgc 494

                                                                       
Query: 562 ctccaacattatgtttttcttgccatcctccggaccaccaaaacattcaaagccagctaa 621
           ||||| || |||||||||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 493 ctccagcaatatgtttttcttgccatcctccgggccacctaaacattcaaaaccggctaa 434

                                                                       
Query: 622 cttgagctcgtccaaaatgccatcctcaccaacaacataaaccttcttttctggagaaaa 681
             ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 433 tctgagctcttccaaaataccatcctcaccgacaacataaaccttcttttctggagagaa 374

                                                                       
Query: 682 tttatttaacttcaagaacatggctgctgcaaatgatgatgtgaagatctcttcctcagt 741
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 373 attatttaacttcaagaacatggctgctgcaaatgatgatgtaaagatctcttcctctgt 314

                            
Query: 742 aacttcaaggccaagtg 758
           ||||||||| |||||||
Sbjct: 313 aacttcaagtccaagtg 297



 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                       
Query: 250 gtttgtgtaaagatctggatggatggtatttgaggcatcctgaagttctggtaaggtagt 309
           |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 943 gtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagt 884

                            
Query: 310 cacacctgacagaacaa 326
           ||| || ||||||||||
Sbjct: 883 cacgccagacagaacaa 867
to top
>dbj|AK121797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095P18, full
            insert sequence
          Length = 4262

 Score =  232 bits (117), Expect = 1e-57
 Identities = 147/157 (93%)
 Strand = Plus / Minus

                                                                        
Query: 322  aacaacaatgggctctttctgcaccgagcaacttactgcagcaaccatagttccagctcc 381
            |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 3700 aacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcc 3641

                                                                        
Query: 382  tggccattcttgggcggatgtcatatgtccagtaggatcacggttggtcgcaatgaaaag 441
            ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3640 tggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaaag 3581

                                                 
Query: 442  gcagcctggattctcacgaatacataagcttgcatac 478
             ||||||||||||||||||||||| ||||| ||||||
Sbjct: 3580 acagcctggattctcacgaatacacaagctcgcatac 3544



 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 591 ccggaccaccaaaacattcaaagccagctaacttgagctcgtccaaaatgccatcctcac 650
           |||| ||||| ||||||||||| || |||||  ||||||| |||||||| ||||||||||
Sbjct: 465 ccgggccacctaaacattcaaaaccggctaatctgagctcttccaaaataccatcctcac 406

                                                                       
Query: 651 caacaacataaaccttcttttctggagaaaatttatttaacttcaagaacatggctgctg 710
           | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 405 cgacaacataaaccttcttttctggagagaaattatttaacttcaagaacatggctgctg 346

                                                           
Query: 711 caaatgatgatgtgaagatctcttcctcagtaacttcaaggccaagtg 758
           ||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 345 caaatgatgatgtaaagatctcttcctctgtaacttcaagtccaagtg 298



 Score =  174 bits (88), Expect = 3e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                        
Query: 477  actgcattttgtaatagttgaagtactgatcaagtccaacaatgacggctccaacacttt 536
            ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1214 actgcattttgtagtagttgaagtactgatcaagtccaacaatgacagctccaacacttt 1155

                                                                    
Query: 537  tgtcgtgatcaaagtagaagttcgcctccaacattatgtttttcttgccatcctcc 592
            |||| || |||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct: 1154 tgtcatgttcaaagtagaagtttgcctccagcaatatgtttttcttgccatcctcc 1099



 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtttgtgtaaagatctggatggatggtatttgaggcatcctgaagttctggtaaggtagt 309
            |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 3910 gtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagt 3851

                             
Query: 310  cacacctgacagaacaa 326
            ||| || ||||||||||
Sbjct: 3850 cacgccagacagaacaa 3834
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  149 bits (75), Expect = 2e-32
 Identities = 93/99 (93%)
 Strand = Plus / Plus

                                                                           
Query: 380     cctggccattcttgggcggatgtcatatgtccagtaggatcacggttggtcgcaatgaaa 439
               ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4483306 cctggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaa 4483365

                                                      
Query: 440     aggcagcctggattctcacgaatacataagcttgcatac 478
               || ||||||||||||||||||||||| ||||| ||||||
Sbjct: 4483366 agacagcctggattctcacgaatacacaagctcgcatac 4483404



 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                           
Query: 662     accttcttttctggagaaaatttatttaacttcaagaacatggctgctgcaaatgatgat 721
               ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 4487728 accttcttttctggagagaaattatttaacttcaagaacatggctgctgcaaatgatgat 4487787

                               
Query: 722     gtgaagatctcttcct 737
               || |||||||||||||
Sbjct: 4487788 gtaaagatctcttcct 4487803



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                           
Query: 250     gtttgtgtaaagatctggatggatggtatttgaggcatcctgaagttctggtaaggtagt 309
               |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 4481451 gtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagt 4481510

                       
Query: 310     cacacctg 317
               ||| ||||
Sbjct: 4481511 cacgcctg 4481518



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                      
Query: 477     actgcattttgtaatagttgaagtactgatcaagtccaacaatgacggctccaac 531
               ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4485734 actgcattttgtagtagttgaagtactgatcaagtccaacaatgacagctccaac 4485788



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                           
Query: 322     aacaacaatgggctctttctgcaccgagcaacttactgcagcaaccatagttccagctcc 381
               |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 4483173 aacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcc 4483232

                 
Query: 382     tg 383
               ||
Sbjct: 4483233 tg 4483234



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                           
Query: 530     acacttttgtcgtgatcaaagtagaagttcgcctccaacattatgtttttcttgccatcc 589
               ||||||||||| || |||||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 4485881 acacttttgtcatgttcaaagtagaagtttgcctccagcaatatgtttttcttgccatcc 4485940

                  
Query: 590     tcc 592
               |||
Sbjct: 4485941 tcc 4485943



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                           
Query: 591     ccggaccaccaaaacattcaaagccagctaacttgagctcgtccaaaatgccatcctcac 650
               |||| ||||| ||||||||||| || |||||  ||||||| |||||||| ||||||||||
Sbjct: 4486577 ccgggccacctaaacattcaaaaccggctaatctgagctcttccaaaataccatcctcac 4486636

                               
Query: 651     caacaacataaacctt 666
               | ||||||||||||||
Sbjct: 4486637 cgacaacataaacctt 4486652
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score =  149 bits (75), Expect = 2e-32
 Identities = 93/99 (93%)
 Strand = Plus / Plus

                                                                         
Query: 380   cctggccattcttgggcggatgtcatatgtccagtaggatcacggttggtcgcaatgaaa 439
             ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 26680 cctggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaa 26739

                                                    
Query: 440   aggcagcctggattctcacgaatacataagcttgcatac 478
             || ||||||||||||||||||||||| ||||| ||||||
Sbjct: 26740 agacagcctggattctcacgaatacacaagctcgcatac 26778



 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                         
Query: 662   accttcttttctggagaaaatttatttaacttcaagaacatggctgctgcaaatgatgat 721
             ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 31102 accttcttttctggagagaaattatttaacttcaagaacatggctgctgcaaatgatgat 31161

                             
Query: 722   gtgaagatctcttcct 737
             || |||||||||||||
Sbjct: 31162 gtaaagatctcttcct 31177



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                         
Query: 250   gtttgtgtaaagatctggatggatggtatttgaggcatcctgaagttctggtaaggtagt 309
             |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 24825 gtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagt 24884

                     
Query: 310   cacacctg 317
             ||| ||||
Sbjct: 24885 cacgcctg 24892



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                    
Query: 477   actgcattttgtaatagttgaagtactgatcaagtccaacaatgacggctccaac 531
             ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 29108 actgcattttgtagtagttgaagtactgatcaagtccaacaatgacagctccaac 29162



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                         
Query: 322   aacaacaatgggctctttctgcaccgagcaacttactgcagcaaccatagttccagctcc 381
             |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 26547 aacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcc 26606

               
Query: 382   tg 383
             ||
Sbjct: 26607 tg 26608



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                         
Query: 530   acacttttgtcgtgatcaaagtagaagttcgcctccaacattatgtttttcttgccatcc 589
             ||||||||||| || |||||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 29255 acacttttgtcatgttcaaagtagaagtttgcctccagcaatatgtttttcttgccatcc 29314

                
Query: 590   tcc 592
             |||
Sbjct: 29315 tcc 29317



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                         
Query: 591   ccggaccaccaaaacattcaaagccagctaacttgagctcgtccaaaatgccatcctcac 650
             |||| ||||| ||||||||||| || |||||  ||||||| |||||||| ||||||||||
Sbjct: 29951 ccgggccacctaaacattcaaaaccggctaatctgagctcttccaaaataccatcctcac 30010

                             
Query: 651   caacaacataaacctt 666
             | ||||||||||||||
Sbjct: 30011 cgacaacataaacctt 30026
to top
>dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1077E10
          Length = 100821

 Score =  149 bits (75), Expect = 2e-32
 Identities = 93/99 (93%)
 Strand = Plus / Plus

                                                                         
Query: 380   cctggccattcttgggcggatgtcatatgtccagtaggatcacggttggtcgcaatgaaa 439
             ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55794 cctggccattcttgaacggatgtcatatgaccagtaggatcacggttggtcgcaatgaaa 55853

                                                    
Query: 440   aggcagcctggattctcacgaatacataagcttgcatac 478
             || ||||||||||||||||||||||| ||||| ||||||
Sbjct: 55854 agacagcctggattctcacgaatacacaagctcgcatac 55892



 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                         
Query: 662   accttcttttctggagaaaatttatttaacttcaagaacatggctgctgcaaatgatgat 721
             ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 60216 accttcttttctggagagaaattatttaacttcaagaacatggctgctgcaaatgatgat 60275

                             
Query: 722   gtgaagatctcttcct 737
             || |||||||||||||
Sbjct: 60276 gtaaagatctcttcct 60291



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                         
Query: 250   gtttgtgtaaagatctggatggatggtatttgaggcatcctgaagttctggtaaggtagt 309
             |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 53939 gtttgtataaagatctggatggatagtatttgaagcgtcctgaagttctggtaaggtagt 53998

                     
Query: 310   cacacctg 317
             ||| ||||
Sbjct: 53999 cacgcctg 54006



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                    
Query: 477   actgcattttgtaatagttgaagtactgatcaagtccaacaatgacggctccaac 531
             ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 58222 actgcattttgtagtagttgaagtactgatcaagtccaacaatgacagctccaac 58276



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                         
Query: 322   aacaacaatgggctctttctgcaccgagcaacttactgcagcaaccatagttccagctcc 381
             |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 55661 aacaacaatgggctctttctgcacagagcaactaacagcagcaaccatagttcccgctcc 55720

               
Query: 382   tg 383
             ||
Sbjct: 55721 tg 55722



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                         
Query: 530   acacttttgtcgtgatcaaagtagaagttcgcctccaacattatgtttttcttgccatcc 589
             ||||||||||| || |||||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 58369 acacttttgtcatgttcaaagtagaagtttgcctccagcaatatgtttttcttgccatcc 58428

                
Query: 590   tcc 592
             |||
Sbjct: 58429 tcc 58431



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                         
Query: 591   ccggaccaccaaaacattcaaagccagctaacttgagctcgtccaaaatgccatcctcac 650
             |||| ||||| ||||||||||| || |||||  ||||||| |||||||| ||||||||||
Sbjct: 59065 ccgggccacctaaacattcaaaaccggctaatctgagctcttccaaaataccatcctcac 59124

                             
Query: 651   caacaacataaacctt 666
             | ||||||||||||||
Sbjct: 59125 cgacaacataaacctt 59140
to top
>ref|XM_472987.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 422 cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
           ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 746 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 706
to top
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
             complete sequence
          Length = 146313

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 422   cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
             ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 63681 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 63721
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 422      cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
                ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 24504050 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 24504090
to top
>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full
           insert sequence
          Length = 2822

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 422 cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
           ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 753 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 713
to top
>dbj|AK104854.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B10, full
           insert sequence
          Length = 1353

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 422 cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
           ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 829 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 789
to top
>dbj|AK066522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072G15, full
           insert sequence
          Length = 1373

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 422 cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
           ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 829 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 789
to top
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
             complete sequence
          Length = 116983

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 422   cggttggtcgcaatgaaaaggcagcctggattctcacgaat 462
             ||||| || |||||||||||||| |||||||||||||||||
Sbjct: 97372 cggtttgtggcaatgaaaaggcaccctggattctcacgaat 97412
to top
>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence
          Length = 126907

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 418   atcacggttggtcgcaatgaaaaggcagcctgg 450
             |||||||||||| |||||||||||||| |||||
Sbjct: 49590 atcacggttggttgcaatgaaaaggcatcctgg 49622
to top
>ref|NM_124150.2| Arabidopsis thaliana ATPK5; phosphoglycolate phosphatase AT5G47760
           (ATPK5) mRNA, complete cds
          Length = 1155

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 576 atcacggttggtcgcaatgaagagacatcccggattctc 538
to top
>emb|BX826485.1|CNS0A467 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB2ZG09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1313

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 570 atcacggttggtcgcaatgaagagacatcccggattctc 532
to top
>gb|BT005294.1| Arabidopsis thaliana At5g47760 mRNA, complete cds
          Length = 906

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 561 atcacggttggtcgcaatgaagagacatcccggattctc 523
to top
>gb|AY087611.1| Arabidopsis thaliana clone 37055 mRNA, complete sequence
          Length = 1152

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 574 atcacggttggtcgcaatgaagagacatcccggattctc 536
to top
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
          Length = 82503

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 418   atcacggttggtcgcaatgaaaaggcagcctggattctc 456
             ||||||||||||||||||||| || || || ||||||||
Sbjct: 20976 atcacggttggtcgcaatgaagagacatcccggattctc 21014
to top
>dbj|D10909.1|ATHPK5 Arabidopsis thaliana gene for serine/threonine protein kinase,
           complete cds
          Length = 4059

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 154 atcacggttggtcgcaatgaagagacatcccggattctc 116
to top
>dbj|AK118640.1| Arabidopsis thaliana At5g47760 mRNA for putative
           4-nitrophenylphosphatase, complete cds, clone:
           RAFL19-90-G08
          Length = 1095

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 418 atcacggttggtcgcaatgaaaaggcagcctggattctc 456
           ||||||||||||||||||||| || || || ||||||||
Sbjct: 576 atcacggttggtcgcaatgaagagacatcccggattctc 538
to top
>gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH077A05, complete sequence
          Length = 113253

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 418   atcacggttggtcgcaatgaaaaggcagcctggattctc 456
             |||||||||||| ||||||||||| || || ||||||||
Sbjct: 16965 atcacggttggtggcaatgaaaagacaacccggattctc 16927
to top
>gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, complete sequence
          Length = 208443

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 635   aaaatgccatcctcaccaacaa 656
             ||||||||||||||||||||||
Sbjct: 76672 aaaatgccatcctcaccaacaa 76651
to top
>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152449

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 731   tcttcctcagtaacttcaaggc 752
             ||||||||||||||||||||||
Sbjct: 60888 tcttcctcagtaacttcaaggc 60867
to top
>gb|AC082651.6| Homo sapiens BAC clone RP11-521D12 from 2, complete sequence
          Length = 203770

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 666    tcttttctggagaaaatttatttaacttc 694
              ||||||||||||||| ||| |||||||||
Sbjct: 108433 tcttttctggagaaactttctttaacttc 108461
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 154     ttgctggtgctgtattcggaa 174
               |||||||||||||||||||||
Sbjct: 3160057 ttgctggtgctgtattcggaa 3160077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,992,201
Number of Sequences: 3902068
Number of extensions: 7992201
Number of successful extensions: 138737
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138533
Number of HSP's gapped (non-prelim): 204
length of query: 769
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 746
effective length of database: 17,143,297,704
effective search space: 12788900087184
effective search space used: 12788900087184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top