Clone Name | rbasd26o04 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full insert mRNA sequence Length = 1264 Score = 791 bits (399), Expect = 0.0 Identities = 544/585 (92%), Gaps = 12/585 (2%) Strand = Plus / Minus Query: 16 caaatacacaatncacatcctgaactgtatgacaccatgaacagaaaaa-gtggaaagtc 74 |||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||||||||| Sbjct: 1177 caaatacacaat-cacatcctgaactgtatcacagcatgaagagaaaaaagtggaaagtc 1119 Query: 75 atatataacactacaaaggcacgaaaaccgccggtatggatatcagcacaaggcctgaaa 134 ||||| | ||||||| |||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 1118 atata--atactacaa-ggcacgaaaaccaccggtatggat--cagcacaaggcctgaaa 1064 Query: 135 gcgtttttgatgagaagt--aatatatgggtggcttcagaccctttgaaatcattgggaa 192 ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 1063 gcgttttagatgagaaaataaatatatgggtggcttcagaccctttcaaatcattgggaa 1004 Query: 193 ggcgagtcgccatactgccacgggttgaactcgatggagctgacgtccgtctcctcggcg 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 ggcgagtcgccatactgccacgggttgaactcgatggagctgacgtccgtctcctcggca 944 Query: 253 acgaccacgctagagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcg 312 ||| | ||||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct: 943 acggca---ctagagctgtctatcgcagcccggtgctcggcgtatctgccattgtactca 887 Query: 313 tacacctccaggtcgccccacggggtaggggagatgtcttccgtcatcttgaaccatttt 372 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 886 tacacctccagatcgccccacggggtaggggagatgtcttcggtcattttgaaccatttt 827 Query: 373 ggagtgaacttctcccccttggtgtcccggattttcttctcggctcgttgttgttcttca 432 || || |||| |||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct: 826 ggtgtaaactgctcccccttggtgtcccggattttcttctcagctctttgttgttcttca 767 Query: 433 agcctgctcttatgtgccccagatttagacatgtcgcccttctcaagggcatatctgtcg 492 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 766 agcctgctcttgtgtgccccagatttagacatgtcacccttctcaagggcatatctgtcg 707 Query: 493 ggccttaatcgggagtctgaaggcaagagcttcttangtgctgtatcaaagctatttatt 552 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 706 ggccttaatcgggagtctgaaggcaagagcttcttaggtgctgtatcaaagctatttatt 647 Query: 553 ttgtgtgcaaagtatgtatactggtacttgtcactcggtggagca 597 ||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 646 ttgtgcgcaaagtatgtatactggtacttgtcattcggtggagca 602
>dbj|AK119251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D09, full insert sequence Length = 821 Score = 170 bits (86), Expect = 3e-39 Identities = 315/391 (80%), Gaps = 3/391 (0%) Strand = Plus / Minus Query: 205 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 264 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 583 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 527 Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 526 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 467 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 466 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 407 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctgctctta 444 |||||||||| || || || | ||||| |||| |||||| ||||||||||||||||| Sbjct: 406 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctcttt 347 Query: 445 tgtgccccagatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgg 504 | || || ||||| |||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 346 tctgaacctgattttgacatgtcacccttctcgagggcatatctatcaggcctcaatcgg 287 Query: 505 gagtctgaaggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaag 564 ||||| || | ||| |||||||| | || ||||| ||||| ||||||||||| || ||| Sbjct: 286 gagtccgatgccaatagcttcttcggcgccgtatcgaagctgtttattttgtgcgcgaag 227 Query: 565 tatgtatactggtacttgtcactcggtggag 595 | || ||||||||||||||| | ||||||| Sbjct: 226 tgcgtgtactggtacttgtcatttggtggag 196 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ataacactacaaaggcacgaaaac 102 |||| ||||||||||||||||||| Sbjct: 718 ataatactacaaaggcacgaaaac 695
>dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full insert sequence Length = 1898 Score = 170 bits (86), Expect = 3e-39 Identities = 315/391 (80%), Gaps = 3/391 (0%) Strand = Plus / Minus Query: 205 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 264 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 1660 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 1604 Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 1603 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 1544 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 1543 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 1484 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctgctctta 444 |||||||||| || || || | ||||| |||| |||||| ||||||||||||||||| Sbjct: 1483 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctgctcttt 1424 Query: 445 tgtgccccagatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgg 504 | || || ||||| |||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct: 1423 tctgaacctgattttgacatgtcacccttctcgagggcatatctatcaggcctcaatcgg 1364 Query: 505 gagtctgaaggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaag 564 ||||| || | ||| |||||||| | || ||||| ||||| ||||||||||| || ||| Sbjct: 1363 gagtccgatgccaatagcttcttcggcgccgtatcgaagctgtttattttgtgcgcgaag 1304 Query: 565 tatgtatactggtacttgtcactcggtggag 595 | || ||||||||||||||| | ||||||| Sbjct: 1303 tgcgtgtactggtacttgtcatttggtggag 1273 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ataacactacaaaggcacgaaaac 102 |||| ||||||||||||||||||| Sbjct: 1795 ataatactacaaaggcacgaaaac 1772
>gb|AY103776.1| Zea mays PCO077793 mRNA sequence Length = 1843 Score = 153 bits (77), Expect = 8e-34 Identities = 259/320 (80%) Strand = Plus / Minus Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||| |||||| || ||||||||||| |||||| |||||||||| || || | |||||| Sbjct: 1493 gagcggtctatggcagcccggtgctctgtgtatttgccgttgtattcataaatttccagg 1434 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 || |||||||| |||||||||| | || |||| ||||||||| | ||||| || | | Sbjct: 1433 tcaccccacggtgtaggggagaccacatctgtcaggttgaaccatctaggagtaaattgc 1374 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctgctctta 444 || ||||||| || || || ||||| |||| |||||||| || ||||||||||| Sbjct: 1373 tcgcccttggcctctcgagttcgtttctcagctctctgttgttcctcgagcctgctcttc 1314 Query: 445 tgtgccccagatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgg 504 | ||||||||| ||||||||||| |||||||| ||||||||||| || ||||| | || Sbjct: 1313 tctgccccagacttagacatgtcacccttctcgagggcatatctatcaggcctcagccgt 1254 Query: 505 gagtctgaaggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaag 564 || || || | ||| ||||||||| |||| || || ||||| |||||||||||||||||| Sbjct: 1253 gaatcagatgccaacagcttcttaggtgccgtgtcgaagctgtttattttgtgtgcaaag 1194 Query: 565 tatgtatactggtacttgtc 584 | ||| |||||||||||||| Sbjct: 1193 tgtgtgtactggtacttgtc 1174
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 3e-18 Identities = 119/142 (83%) Strand = Plus / Minus Query: 454 gatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgggagtctgaa 513 ||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||| || Sbjct: 9195785 gattttgacatgtcacccttctcgagggcatatctatcaggcctcaatcgggagtccgat 9195726 Query: 514 ggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaagtatgtatac 573 | ||| |||||||| | || ||||| ||||| ||||||||||| || |||| || ||| Sbjct: 9195725 gccaatagcttcttcggcgccgtatcgaagctgtttattttgtgcgcgaagtgcgtgtac 9195666 Query: 574 tggtacttgtcactcggtggag 595 |||||||||||| | ||||||| Sbjct: 9195665 tggtacttgtcatttggtggag 9195644 Score = 79.8 bits (40), Expect = 9e-12 Identities = 186/234 (79%), Gaps = 3/234 (1%) Strand = Plus / Minus Query: 205 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 264 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 9196136 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9196080 Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 9196079 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9196020 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 9196019 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9195960 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctg 438 |||||||||| || || || | ||||| |||| |||||| |||||||||||| Sbjct: 9195959 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctg 9195906 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ataacactacaaaggcacgaaaac 102 |||| ||||||||||||||||||| Sbjct: 9196271 ataatactacaaaggcacgaaaac 9196248
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 101 bits (51), Expect = 3e-18 Identities = 119/142 (83%) Strand = Plus / Plus Query: 454 gatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgggagtctgaa 513 ||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||| || Sbjct: 90606 gattttgacatgtcacccttctcgagggcatatctatcaggcctcaatcgggagtccgat 90665 Query: 514 ggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaagtatgtatac 573 | ||| |||||||| | || ||||| ||||| ||||||||||| || |||| || ||| Sbjct: 90666 gccaatagcttcttcggcgccgtatcgaagctgtttattttgtgcgcgaagtgcgtgtac 90725 Query: 574 tggtacttgtcactcggtggag 595 |||||||||||| | ||||||| Sbjct: 90726 tggtacttgtcatttggtggag 90747 Score = 79.8 bits (40), Expect = 9e-12 Identities = 186/234 (79%), Gaps = 3/234 (1%) Strand = Plus / Plus Query: 205 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 264 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 90255 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 90311 Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 90312 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 90371 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 90372 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 90431 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctg 438 |||||||||| || || || | ||||| |||| |||||| |||||||||||| Sbjct: 90432 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctg 90485 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 ataacactacaaaggcacgaaaac 102 |||| ||||||||||||||||||| Sbjct: 90120 ataatactacaaaggcacgaaaac 90143
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 3e-18 Identities = 119/142 (83%) Strand = Plus / Minus Query: 454 gatttagacatgtcgcccttctcaagggcatatctgtcgggccttaatcgggagtctgaa 513 ||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||| || Sbjct: 9193618 gattttgacatgtcacccttctcgagggcatatctatcaggcctcaatcgggagtccgat 9193559 Query: 514 ggcaagagcttcttangtgctgtatcaaagctatttattttgtgtgcaaagtatgtatac 573 | ||| |||||||| | || ||||| ||||| ||||||||||| || |||| || ||| Sbjct: 9193558 gccaatagcttcttcggcgccgtatcgaagctgtttattttgtgcgcgaagtgcgtgtac 9193499 Query: 574 tggtacttgtcactcggtggag 595 |||||||||||| | ||||||| Sbjct: 9193498 tggtacttgtcatttggtggag 9193477 Score = 79.8 bits (40), Expect = 9e-12 Identities = 186/234 (79%), Gaps = 3/234 (1%) Strand = Plus / Minus Query: 205 tactgccacgggttgaactcgatggagctgacgtccgtctcctcggcgacgaccacgcta 264 ||||||||||||||||| ||||| || ||||||| || || ||| || | ||| || Sbjct: 9193969 tactgccacgggttgaattcgatcgaagtgacgtctgtatcgtcgtcggc---cacactt 9193913 Query: 265 gagctgtctatcgcggcccggtgctcggtgtatctgccgttgtactcgtacacctccagg 324 |||||||| || || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct: 9193912 gagctgtcaatggcagcgcggtgctcggtgtattttccattgtattcatacacttccagc 9193853 Query: 325 tcgccccacggggtaggggagatgtcttccgtcatcttgaaccattttggagtgaacttc 384 |||||||| || ||||||| ||| || || ||| | || |||||| ||||||| || | | Sbjct: 9193852 tcgccccagggtgtaggggcgatttcatcggtcctgttaaaccatcttggagtaaattgc 9193793 Query: 385 tcccccttggtgtcccggattttcttctcggctcgttgttgttcttcaagcctg 438 |||||||||| || || || | ||||| |||| |||||| |||||||||||| Sbjct: 9193792 tcccccttggcctctcgtgttcttttctcagctctttgttgctcttcaagcctg 9193739 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ataacactacaaaggcacgaaaac 102 |||| ||||||||||||||||||| Sbjct: 9194104 ataatactacaaaggcacgaaaac 9194081
>gb|AY450640.1| Solanum tuberosum oxysterol-binding protein mRNA, complete cds Length = 1557 Score = 67.9 bits (34), Expect = 4e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 523 ttcttangtgctgtatcaaagctatttattttgtgtgcaaagtatgtatactg 575 |||||| |||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 1051 ttcttaggtgcagtatcaaagctattaatcttgtgtgcaaaatatgtatactg 999
>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence Length = 164461 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 aaaagtggaaagtcatatata 81 ||||||||||||||||||||| Sbjct: 28931 aaaagtggaaagtcatatata 28951
>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23, complete sequence Length = 176610 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaaagtggaaagtcatatata 81 ||||||||||||||||||||| Sbjct: 147680 aaaagtggaaagtcatatata 147660
>gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, complete sequence Length = 26703 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 ttttcttctcggctcgttgtt 424 ||||||||||||||||||||| Sbjct: 9515 ttttcttctcggctcgttgtt 9535
>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22, complete sequence Length = 183007 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 aaaagtggaaagtcatatata 81 ||||||||||||||||||||| Sbjct: 178824 aaaagtggaaagtcatatata 178844
>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete sequence Length = 271507 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaaagtggaaagtcatatata 81 ||||||||||||||||||||| Sbjct: 87881 aaaagtggaaagtcatatata 87861
>ref|XM_478238.1| Oryza sativa (japonica cultivar-group), mRNA Length = 414 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tcccggattttcttctcggc 416 |||||||||||||||||||| Sbjct: 287 tcccggattttcttctcggc 306
>ref|XM_472990.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2757 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tctgaaggcaagagcttctt 527 |||||||||||||||||||| Sbjct: 1522 tctgaaggcaagagcttctt 1541
>ref|XM_362059.1| Magnaporthe grisea 70-15 hypothetical protein (MG04504.4) partial cds Length = 693 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 cttctcggctcgttgttgttcttc 431 ||||||||||||||||||| |||| Sbjct: 324 cttctcggctcgttgttgtgcttc 301
>ref|XM_804221.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053507837.20) partial mRNA Length = 1434 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctccaggtcgccccacggg 336 |||||||||||||||||||| Sbjct: 364 cctccaggtcgccccacggg 345
>ref|XM_804530.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053508405.70) partial mRNA Length = 1434 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctccaggtcgccccacggg 336 |||||||||||||||||||| Sbjct: 364 cctccaggtcgccccacggg 345
>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG island, complete sequence Length = 170970 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 agctatttattttgtgtgcaaagt 565 |||||||||| ||||||||||||| Sbjct: 96241 agctatttatgttgtgtgcaaagt 96218
>ref|XM_792977.1| PREDICTED: Strongylocentrotus purpuratus similar to Mitogen-activated protein kinase kinase kinase kinase 5 (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) (LOC593505), mRNA Length = 2643 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cttcagaccctttgaaatcattgg 189 |||||| ||||||||||||||||| Sbjct: 1240 cttcagcccctttgaaatcattgg 1217
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains pseudogene similar to part of a novel gene (KIAA1688), a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) (ANT3) pseudogene and a CpG island, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 tgtatcaaagctatttattt 553 |||||||||||||||||||| Sbjct: 11654 tgtatcaaagctatttattt 11673
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tctgaaggcaagagcttctt 527 |||||||||||||||||||| Sbjct: 78714 tctgaaggcaagagcttctt 78733
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ctatttattttgtgtgcaaa 563 |||||||||||||||||||| Sbjct: 43510 ctatttattttgtgtgcaaa 43529
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tctgaaggcaagagcttctt 527 |||||||||||||||||||| Sbjct: 24519083 tctgaaggcaagagcttctt 24519102
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ctatttattttgtgtgcaaa 563 |||||||||||||||||||| Sbjct: 11459517 ctatttattttgtgtgcaaa 11459536
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tcccggattttcttctcggc 416 |||||||||||||||||||| Sbjct: 18757364 tcccggattttcttctcggc 18757383
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 gtcgcccttctcaagggcat 484 |||||||||||||||||||| Sbjct: 3193593 gtcgcccttctcaagggcat 3193574
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tcccggattttcttctcggc 416 |||||||||||||||||||| Sbjct: 89652 tcccggattttcttctcggc 89671
>dbj|AK069045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010C01, full insert sequence Length = 3326 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tctgaaggcaagagcttctt 527 |||||||||||||||||||| Sbjct: 1809 tctgaaggcaagagcttctt 1828
>gb|AC102452.7| Mus musculus chromosome 5, clone RP24-272L20, complete sequence Length = 183858 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ctatttattttgtgtgcaaa 563 |||||||||||||||||||| Sbjct: 139016 ctatttattttgtgtgcaaa 139035
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ctatttattttgtgtgcaaa 563 |||||||||||||||||||| Sbjct: 11465957 ctatttattttgtgtgcaaa 11465976
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tctgaaggcaagagcttctt 527 |||||||||||||||||||| Sbjct: 112405 tctgaaggcaagagcttctt 112424
>emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chromosome X, complete sequence Length = 190178 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 agaccctttgaaatcattgg 189 |||||||||||||||||||| Sbjct: 102734 agaccctttgaaatcattgg 102753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,326,584 Number of Sequences: 3902068 Number of extensions: 4326584 Number of successful extensions: 82057 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81744 Number of HSP's gapped (non-prelim): 303 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)