>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)|
          Length = 488

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 146 YMVFPGFYIEHKTGIHQVRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 322
           Y + P  Y+ H  G   V  NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 135 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 188

Query: 323 GNRS 334
           G +S
Sbjct: 189 GEKS 192

>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)|
          Length = 489

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 146 YMVFPGFYIEHKTGIHQVRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 322
           Y + P  Y+ H  G   V  NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 136 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 189

Query: 323 GNRS 334
           G +S
Sbjct: 190 GEKS 193

>MTBR_BACSU (P06530) Modification methylase BsuRI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase BsuRI) (M.BsuRI)
          Length = 436

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 68  KFQKTLYVSLFFQVRQQPITKGWKYQYMV-FPGFYIEHKTGIHQVRNNHSIFPRCN 232
           +F +    S+F  +    + K     Y   FPG  I+H+  I QV+     FP+CN
Sbjct: 98  RFNELRNKSIFHTIYTNDLFKEANQTYKTNFPGHVIQHEKDIRQVK----YFPKCN 149

>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog|
          Length = 3251

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 194  QVRNNHSIFPRCNSDYDVADQFTLFVDSHR 283
            ++R +HS FP+C  DY VAD    F D  +
Sbjct: 2078 EIREDHSFFPKC-QDYIVADPSPDFPDQQQ 2106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,077,049
Number of Sequences: 219361
Number of extensions: 1276642
Number of successful extensions: 2914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)