ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26o02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, ful... 547 e-152
2dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
3gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 107 3e-20
4gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genom... 107 3e-20
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
7gb|AY112561.1| Zea mays CL39582_1 mRNA sequence 82 2e-12
8gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein m... 50 0.006
9dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
10gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromo... 42 1.5
11emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on ch... 42 1.5
12gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromoso... 42 1.5
13emb|AL713978.9| Mouse DNA sequence from clone RP23-159H8 on chro... 42 1.5
14dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.5
15ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 ... 40 6.0
16gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 6.0
17gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's ... 40 6.0
18gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, p... 40 6.0
19gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, comple... 40 6.0
20gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, co... 40 6.0
21ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA deh... 40 6.0
22ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA deh... 40 6.0
23gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, compl... 40 6.0
24emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chr... 40 6.0
25emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 6.0
26emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 6.0
27emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.0
28gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 6.0
29dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, ... 40 6.0
30gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.0
31gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chrom... 40 6.0
32gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, compl... 40 6.0
33gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chrom... 40 6.0
34gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, comp... 40 6.0
35dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.0
36gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from... 40 6.0
37emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, c... 40 6.0
38dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.0
39gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y... 40 6.0
40gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell ... 40 6.0
41gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complet... 40 6.0
42gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC... 40 6.0 
>gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA
           sequence
          Length = 862

 Score =  547 bits (276), Expect = e-152
 Identities = 383/418 (91%), Gaps = 15/418 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatacagacaaaagaatcaacatnctttcagtaatacagnttgcgacgtgcatgctttc 60
           ||||||||||||||||||||||||   | ||| ||||||| || |||| |||| ||||||
Sbjct: 781 atatacagacaaaagaatcaacata--tccag-aatacagctttcgacatgcaagctttc 725

                                                                       
Query: 61  cttggtgaaattccaaaaaa------cactttatgtgtctttgttcttccaggtcaggca 114
           ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||
Sbjct: 724 cttggtgaaattccaaaaaaaaaaaacactttatgtgtctttgttcttccaggtcaggca 665

                                                                       
Query: 115 gcaaccaatcaccaaaggctggaaataccagtacatggtctttccaggtttttatataga 174
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 664 gcaaccaatcaccaaaggctggaaataccagtacatggtctttccaggttcttatataga 605

                                                                       
Query: 175 acacaaaacaggtatacatcaggtgagaaacaatcattcaatttttcccaggtgtaattc 234
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 604 acacaaaacaggtatacatcaggtgagaaacaacccttcaatttttcccaggtgtaattc 545

                                                                       
Query: 235 cgactacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaacaa 294
           | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 544 caactacgacgttgctgaccagtttacccttttcgtcaactgtcatagggttctcaacaa 485

                                                                       
Query: 295 caacggttacattctggggctgagatgtgggaacagaagctgatgaagcattatatgcag 354
           | ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct: 484 cgacggttacattctggggttgaggtgtgggaacagaagctgatgaggcattatatgcag 425

                                                                     
Query: 355 attcatttgatgtaggccttggacatggngcaggtgacatggtgtttattccagtatt 412
           ||||||||||||||      |||||||| || |||| |||||| ||||||||||||||
Sbjct: 424 attcatttgatgta------ggacatggcgcgggtggcatggtatttattccagtatt 373
to top
>dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071E13, full
           insert sequence
          Length = 1089

 Score =  129 bits (65), Expect = 8e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                       
Query: 218 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 277
           |||||||| ||||| ||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 780 tttcccagttgtaactccaactacaacattgctaaccagtttacccttttcatcaacagt 721

                                                            
Query: 278 catagggttctcaacaacaacggttacattctggggctgagatgtggga 326
           |||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 720 catagggttctcgacaacaacggttacattctggggtcgagatgtggga 672



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 83/103 (80%)
 Strand = Plus / Minus

                                                                       
Query: 342 gcattatatgcagattcatttgatgtaggccttggacatggngcaggtgacatggtgttt 401
           |||||||||| |||| || ||||||||||| ||||| |||| |  |||| ||  || || 
Sbjct: 626 gcattatatgaagatccacttgatgtaggcattggagatggcgtgggtgccacagtattc 567

                                                      
Query: 402 attccagtattcgngataaaatcgcanatggcacatttgacag 444
           ||||| || || | |||| ||| ||| ||||||||||||||||
Sbjct: 566 attccggtgtttgtgatataatggcatatggcacatttgacag 524
to top
>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                          
Query: 252    accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 311
              ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 173435 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 173376

                            
Query: 312    ggctgagatgtggg 325
              ||  ||||||||||
Sbjct: 173375 ggtcgagatgtggg 173362



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 342    gcattatatgcagattcatttgatgtaggccttggacatgg 382
              |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 173229 gcattatatgaagatccacttgatgtaggcattggagatgg 173189
to top
>gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genomic sequence, complete
             sequence
          Length = 120254

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                         
Query: 252   accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 311
             ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 11532 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 11473

                           
Query: 312   ggctgagatgtggg 325
             ||  ||||||||||
Sbjct: 11472 ggtcgagatgtggg 11459



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 342   gcattatatgcagattcatttgatgtaggccttggacatgg 382
             |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 11326 gcattatatgaagatccacttgatgtaggcattggagatgg 11286
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                            
Query: 252      accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 311
                ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 24462425 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24462484

                              
Query: 312      ggctgagatgtggg 325
                ||  ||||||||||
Sbjct: 24462485 ggtcgagatgtggg 24462498



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 342      gcattatatgcagattcatttgatgtaggccttggacatgg 382
                |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 24462631 gcattatatgaagatccacttgatgtaggcattggagatgg 24462671
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                            
Query: 252      accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 311
                ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 24379894 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24379953

                              
Query: 312      ggctgagatgtggg 325
                ||  ||||||||||
Sbjct: 24379954 ggtcgagatgtggg 24379967



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 342      gcattatatgcagattcatttgatgtaggccttggacatgg 382
                |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 24380100 gcattatatgaagatccacttgatgtaggcattggagatgg 24380140
to top
>gb|AY112561.1| Zea mays CL39582_1 mRNA sequence
          Length = 749

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 218 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 277
           |||||||| ||| | ||| ||||| ||| ||||||| ||||| ||||| || || || ||
Sbjct: 316 tttcccagctgtgactccaactacaacgctgctgacaagttttcccttgtcatcaactgt 375

                                            
Query: 278 catagggttctcaacaacaacggttacattctg 310
           ||||||||||||||||||||| |||||||||||
Sbjct: 376 catagggttctcaacaacaacagttacattctg 408
to top
>gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein mRNA, partial cds
          Length = 465

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 ccgactacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaaca 293
           ||||||||||||||||| |||| ||| ||||| || || || ||||| ||||| || || 
Sbjct: 440 ccgactacgacgttgctcaccaatttccccttgtcatctactgtcattgggttttcgacg 381

                            
Query: 294 acaacggttacattctg 310
           || || |||||||||||
Sbjct: 380 accaccgttacattctg 364
to top
>dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full
           insert sequence
          Length = 1182

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 actacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaacaaca 296
           ||||| |||||||| ||||  || |||||| | || || |||||||| || |||||||||
Sbjct: 706 actacaacgttgctcaccaactttccctttgcatctaccgtcataggattttcaacaaca 647

                         
Query: 297 acggttacattctg 310
           || || ||||||||
Sbjct: 646 acagtaacattctg 633
to top
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete
              sequence
          Length = 196547

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    gtttttatatagaacacaaaa 182
              |||||||||||||||||||||
Sbjct: 148335 gtttttatatagaacacaaaa 148315
to top
>emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on chromosome 6 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene
             and a novel gene, complete sequence
          Length = 138027

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   gtttttatatagaacacaaaa 182
             |||||||||||||||||||||
Sbjct: 52250 gtttttatatagaacacaaaa 52230
to top
>gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromosome 7, complete
             sequence
          Length = 23935

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   caatttttcccaggtgtaatt 233
             |||||||||||||||||||||
Sbjct: 19530 caatttttcccaggtgtaatt 19510
to top
>emb|AL713978.9| Mouse DNA sequence from clone RP23-159H8 on chromosome X, complete
              sequence
          Length = 183455

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      atatacagacaaaagaatcaa 21
              |||||||||||||||||||||
Sbjct: 116319 atatacagacaaaagaatcaa 116299
to top
>dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T8O3
          Length = 54386

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 62   ttggtgaaattccaaaaaaca 82
            |||||||||||||||||||||
Sbjct: 3242 ttggtgaaattccaaaaaaca 3222
to top
>ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 mRNA, complete cds
          Length = 3825

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  cacaaaacaggtatacatca 195
            ||||||||||||||||||||
Sbjct: 2073 cacaaaacaggtatacatca 2054
to top
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     aagctgatgaagcattatat 350
               ||||||||||||||||||||
Sbjct: 2375354 aagctgatgaagcattatat 2375335
to top
>gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 234420

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    gatgtgggaacagaagctga 337
              ||||||||||||||||||||
Sbjct: 111220 gatgtgggaacagaagctga 111239
to top
>gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, partial cds
          Length = 1298

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   gaaattccaaaaaacacttt 86
            ||||||||||||||||||||
Sbjct: 1100 gaaattccaaaaaacacttt 1081
to top
>gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, complete sequence
          Length = 48279

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tttttatatagaacacaaaa 182
             ||||||||||||||||||||
Sbjct: 42002 tttttatatagaacacaaaa 42021
to top
>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ggctgagatgtgggaacaga 331
              ||||||||||||||||||||
Sbjct: 166669 ggctgagatgtgggaacaga 166650
to top
>ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase
           (Tc00.1047053509153.120) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 tttttcccaggtgtaattcc 235
           ||||||||||||||||||||
Sbjct: 653 tttttcccaggtgtaattcc 634
to top
>ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase
           (Tc00.1047053510303.290) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 tttttcccaggtgtaattcc 235
           ||||||||||||||||||||
Sbjct: 653 tttttcccaggtgtaattcc 634
to top
>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence
          Length = 165651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   tgagatgtgggaacagaagc 334
             ||||||||||||||||||||
Sbjct: 47008 tgagatgtgggaacagaagc 47027
to top
>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part of
              the RGS7 gene for regulator of G-protein signalling 7,
              complete sequence
          Length = 182323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tttatgtgtctttgttcttc 103
              ||||||||||||||||||||
Sbjct: 150383 tttatgtgtctttgttcttc 150402
to top
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     aagctgatgaagcattatat 350
               ||||||||||||||||||||
Sbjct: 2318924 aagctgatgaagcattatat 2318905
to top
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     aagctgatgaagcattatat 350
               ||||||||||||||||||||
Sbjct: 2345300 aagctgatgaagcattatat 2345281
to top
>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    gcaggtgacatggtgtttat 403
              ||||||||||||||||||||
Sbjct: 310862 gcaggtgacatggtgtttat 310881
to top
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     gctgagatgtgggaacagaa 332
               ||||||||||||||||||||
Sbjct: 1439210 gctgagatgtgggaacagaa 1439191
to top
>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence
          Length = 162472

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggctgagatgtgggaacaga 331
             ||||||||||||||||||||
Sbjct: 36056 ggctgagatgtgggaacaga 36037
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 312      ggctgagatgtgggaacaga 331
                ||||||||||||||||||||
Sbjct: 18871350 ggctgagatgtgggaacaga 18871369
to top
>gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chromosome unknown, complete
              sequence
          Length = 206361

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 332    agctgatgaagcattatatgcaga 355
              |||||||||||||||| |||||||
Sbjct: 189599 agctgatgaagcattaaatgcaga 189622
to top
>gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, complete sequence
          Length = 159981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 332   agctgatgaagcattatatgcaga 355
             |||||||||||||||| |||||||
Sbjct: 61304 agctgatgaagcattaaatgcaga 61281
to top
>gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chromosome unknown, complete
              sequence
          Length = 170276

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 332    agctgatgaagcattatatgcaga 355
              |||||||||||||||| |||||||
Sbjct: 110069 agctgatgaagcattaaatgcaga 110046
to top
>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence
          Length = 192347

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    tgagatgtgggaacagaagc 334
              ||||||||||||||||||||
Sbjct: 187937 tgagatgtgggaacagaagc 187956
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     gcaggtgacatggtgtttat 403
               ||||||||||||||||||||
Sbjct: 3131142 gcaggtgacatggtgtttat 3131161
to top
>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence
          Length = 172072

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggctgagatgtgggaacaga 331
             ||||||||||||||||||||
Sbjct: 82150 ggctgagatgtgggaacaga 82131
to top
>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence
          Length = 160029

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    tttttatatagaacacaaaa 182
              ||||||||||||||||||||
Sbjct: 110802 tttttatatagaacacaaaa 110821
to top
>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3
          Length = 42356

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  cacaaaacaggtatacatca 195
            ||||||||||||||||||||
Sbjct: 5353 cacaaaacaggtatacatca 5334
to top
>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence
          Length = 202354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ggctgagatgtgggaacaga 331
             ||||||||||||||||||||
Sbjct: 60083 ggctgagatgtgggaacaga 60102
to top
>gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 60801

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   tttatatagaacacaaaacaggta 188
             |||||||| |||||||||||||||
Sbjct: 29208 tttatatataacacaaaacaggta 29231
to top
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence
          Length = 188193

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 246    ttgctgaccagtttacccttttcgtcga 273
              ||||||||||||||||| ||||| ||||
Sbjct: 175814 ttgctgaccagtttaccgttttcctcga 175787
to top
>gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC Library C) complete
              sequence
          Length = 198842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    tgaagcattatatgcagattcatt 361
              ||||||| ||||||||||||||||
Sbjct: 147126 tgaagcaatatatgcagattcatt 147103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,400,412
Number of Sequences: 3902068
Number of extensions: 4400412
Number of successful extensions: 93844
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93505
Number of HSP's gapped (non-prelim): 338
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top