ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26n23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 4e-73
2gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
3gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
6dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
7ref|NM_105744.2| Arabidopsis thaliana unknown protein AT1G70760 ... 46 0.15
8gb|BT010638.1| Arabidopsis thaliana At1g70760 gene, complete cds 46 0.15
9emb|BX817638.1|CNS0AB3Z Arabidopsis thaliana Full-length cDNA Co... 46 0.15
10gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A... 46 0.15
11gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15... 46 0.15
12gb|AC148053.3| Carollia perspicillata clone 594J14, complete seq... 44 0.59
13gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 44 0.59
14emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in... 42 2.3
15gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 9.2
16ref|NM_192887.1| Oryza sativa (japonica cultivar-group), predic... 40 9.2
17ref|XM_475062.1| Oryza sativa (japonica cultivar-group), predic... 40 9.2
18gb|AC153007.4| Mus musculus BAC clone RP24-266E2 from chromosome... 40 9.2
19ref|XM_752437.1| Ustilago maydis 521 hypothetical protein (UM013... 40 9.2
20emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, compl... 40 9.2
21gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 9.2
22gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome... 40 9.2
23gb|AC140307.3| Mus musculus BAC clone RP23-389D15 from chromosom... 40 9.2
24ref|XM_538398.2| PREDICTED: Canis familiaris similar to neutroph... 40 9.2
25gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosom... 40 9.2
26ref|XM_537004.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 9.2
27gb|AC136717.10| Mus musculus chromosome 7, clone RP23-48C24, com... 40 9.2
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 9.2
29emb|AL359252.17| Human DNA sequence from clone RP11-111H14 on ch... 40 9.2
30gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 9.2
31gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 9.2
32gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of... 40 9.2
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
34gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, comp... 40 9.2
35gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, comp... 40 9.2
36dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.2
38gb|AC012087.10|AC012087 Homo sapiens 3 BAC RP11-317L10,RP11-150K... 40 9.2
39dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.2
40ref|XM_318428.2| Anopheles gambiae str. PEST ENSANGP00000014841 ... 40 9.2
41dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
42dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
43gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosom... 40 9.2
44emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in ... 40 9.2
45gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromos... 40 9.2
46emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on ch... 40 9.2
47gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2 
>dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A08, full
           insert sequence
          Length = 975

 Score =  283 bits (143), Expect = 4e-73
 Identities = 194/211 (91%)
 Strand = Plus / Minus

                                                                       
Query: 83  gtgggtatctgtccttgaacagaggggtgccttccttcggtttggaccaagggtacttca 142
           |||||||||||||||||||||  || ||||||||||| || |||||||||||||||||||
Sbjct: 673 gtgggtatctgtccttgaacaacggtgtgccttcctttggcttggaccaagggtacttca 614

                                                                       
Query: 143 tggttttatcccttgggaactttctgaagttgacaaacggtgcccagagcatcaaaccgg 202
           |||||  ||||||||||||||| ||||||||||| || |||||||| | |||||  ||||
Sbjct: 613 tggttggatcccttgggaacttcctgaagttgacgaatggtgcccacaacatcatcccgg 554

                                                                       
Query: 203 ggaagaagaggtacgtgaacatgaactgcagatacgtctcgatgaacttgcgcttgaacc 262
           ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 553 ggaagaagaggtaggtgaacatgaactgcaggtacgtctcgacgaacttgcgcttgaacc 494

                                          
Query: 263 acctcagcctcatccagttcatgataatcgg 293
           |||||||||||||||||||||||||||||||
Sbjct: 493 acctcagcctcatccagttcatgataatcgg 463



 Score =  117 bits (59), Expect = 5e-23
 Identities = 130/153 (84%), Gaps = 3/153 (1%)
 Strand = Plus / Minus

                                                                       
Query: 301 acgaagaggtagaagaaggcgatcgcggccaccggcggcaggatccccaggatgtcgatg 360
           ||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 360 acgaacaggtaaacgaaggcgatggcggccaccgtcggcaggatccccaggatgtcgagg 301

                                                                       
Query: 361 tcctcctccccgctcaccgtcgccagagcagccggggcttgcaccgctgcccagatggcg 420
           |||||||| ||  ||||   |||||| || |||||||| |  ||||||||||||||||| 
Sbjct: 300 tcctcctcgcccgtcac---cgccagcgccgccggggcctcaaccgctgcccagatggca 244

                                            
Query: 421 ccgcactgcaacacggaggccagcttctgcagc 453
           |||||||||| | | | |||||||||| |||||
Sbjct: 243 ccgcactgcagcgccgcggccagcttccgcagc 211
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>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01,
              complete sequence
          Length = 151938

 Score =  165 bits (83), Expect = 2e-37
 Identities = 92/95 (96%)
 Strand = Plus / Plus

                                                                          
Query: 199    ccggggaagaagaggtacgtgaacatgaactgcagatacgtctcgatgaacttgcgcttg 258
              ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 134218 ccggggaagaagaggtaggtgaacatgaactgcaggtacgtctcgacgaacttgcgcttg 134277

                                                 
Query: 259    aaccacctcagcctcatccagttcatgataatcgg 293
              |||||||||||||||||||||||||||||||||||
Sbjct: 134278 aaccacctcagcctcatccagttcatgataatcgg 134312



 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                          
Query: 83     gtgggtatctgtccttgaacagaggggtgccttccttcggtttggaccaagggtacttca 142
              |||||||||||||||||||||  || ||||||||||| || |||||||||||||||||||
Sbjct: 133584 gtgggtatctgtccttgaacaacggtgtgccttcctttggcttggaccaagggtacttca 133643

                                                            
Query: 143    tggttttatcccttgggaactttctgaagttgacaaacggtgccca 188
              |||||  ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 133644 tggttggatcccttgggaacttcctgaagttgacgaatggtgccca 133689



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                          
Query: 301    acgaagaggtagaagaaggcgatcgcggccaccggcggcaggatccccaggatgtcgatg 360
              ||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 134415 acgaacaggtaaacgaaggcgatggcggccaccgtcggcaggatccccaggatgtcgagg 134474

                      
Query: 361    tcctcctc 368
              ||||||||
Sbjct: 134475 tcctcctc 134482



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 403    accgctgcccagatggcgccgcactgcaacacggaggccagcttctgcagc 453
              ||||||||||||||||| |||||||||| | | | |||||||||| |||||
Sbjct: 134617 accgctgcccagatggcaccgcactgcagcgccgcggccagcttccgcagc 134667
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>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0052F16, complete sequence
          Length = 162082

 Score =  165 bits (83), Expect = 2e-37
 Identities = 92/95 (96%)
 Strand = Plus / Plus

                                                                         
Query: 199   ccggggaagaagaggtacgtgaacatgaactgcagatacgtctcgatgaacttgcgcttg 258
             ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 78214 ccggggaagaagaggtaggtgaacatgaactgcaggtacgtctcgacgaacttgcgcttg 78273

                                                
Query: 259   aaccacctcagcctcatccagttcatgataatcgg 293
             |||||||||||||||||||||||||||||||||||
Sbjct: 78274 aaccacctcagcctcatccagttcatgataatcgg 78308



 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                         
Query: 83    gtgggtatctgtccttgaacagaggggtgccttccttcggtttggaccaagggtacttca 142
             |||||||||||||||||||||  || ||||||||||| || |||||||||||||||||||
Sbjct: 77580 gtgggtatctgtccttgaacaacggtgtgccttcctttggcttggaccaagggtacttca 77639

                                                           
Query: 143   tggttttatcccttgggaactttctgaagttgacaaacggtgccca 188
             |||||  ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 77640 tggttggatcccttgggaacttcctgaagttgacgaatggtgccca 77685



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 301   acgaagaggtagaagaaggcgatcgcggccaccggcggcaggatccccaggatgtcgatg 360
             ||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 78411 acgaacaggtaaacgaaggcgatggcggccaccgtcggcaggatccccaggatgtcgagg 78470

                     
Query: 361   tcctcctc 368
             ||||||||
Sbjct: 78471 tcctcctc 78478



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 403   accgctgcccagatggcgccgcactgcaacacggaggccagcttctgcagc 453
             ||||||||||||||||| |||||||||| | | | |||||||||| |||||
Sbjct: 78613 accgctgcccagatggcaccgcactgcagcgccgcggccagcttccgcagc 78663
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  165 bits (83), Expect = 2e-37
 Identities = 92/95 (96%)
 Strand = Plus / Plus

                                                                            
Query: 199      ccggggaagaagaggtacgtgaacatgaactgcagatacgtctcgatgaacttgcgcttg 258
                ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 16286861 ccggggaagaagaggtaggtgaacatgaactgcaggtacgtctcgacgaacttgcgcttg 16286920

                                                   
Query: 259      aaccacctcagcctcatccagttcatgataatcgg 293
                |||||||||||||||||||||||||||||||||||
Sbjct: 16286921 aaccacctcagcctcatccagttcatgataatcgg 16286955



 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                            
Query: 83       gtgggtatctgtccttgaacagaggggtgccttccttcggtttggaccaagggtacttca 142
                |||||||||||||||||||||  || ||||||||||| || |||||||||||||||||||
Sbjct: 16286227 gtgggtatctgtccttgaacaacggtgtgccttcctttggcttggaccaagggtacttca 16286286

                                                              
Query: 143      tggttttatcccttgggaactttctgaagttgacaaacggtgccca 188
                |||||  ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 16286287 tggttggatcccttgggaacttcctgaagttgacgaatggtgccca 16286332



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 301      acgaagaggtagaagaaggcgatcgcggccaccggcggcaggatccccaggatgtcgatg 360
                ||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 16287058 acgaacaggtaaacgaaggcgatggcggccaccgtcggcaggatccccaggatgtcgagg 16287117

                        
Query: 361      tcctcctc 368
                ||||||||
Sbjct: 16287118 tcctcctc 16287125



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 403      accgctgcccagatggcgccgcactgcaacacggaggccagcttctgcagc 453
                ||||||||||||||||| |||||||||| | | | |||||||||| |||||
Sbjct: 16287260 accgctgcccagatggcaccgcactgcagcgccgcggccagcttccgcagc 16287310



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cctcctccccgctcaccgtc 381
              ||||||||||||||||||||
Sbjct: 187851 cctcctccccgctcaccgtc 187870
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                  
Query: 217      gtgaacatgaactgcagatacgtctcgatgaacttgcgcttgaaccacct 266
                ||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct: 14537806 gtgaacatgaactgcaggtacgtctcgacgaacttgcgctcgaaccacct 14537855
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                               
Query: 217   gtgaacatgaactgcagatacgtctcgatgaacttgcgcttgaaccacct 266
             ||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct: 36095 gtgaacatgaactgcaggtacgtctcgacgaacttgcgctcgaaccacct 36144
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>ref|NM_105744.2| Arabidopsis thaliana unknown protein AT1G70760 mRNA, complete cds
          Length = 1300

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 154 cttgggaactttctgaagttgacaaacggtgccca 188
           ||||||||||| |||||||||| ||| ||||||||
Sbjct: 504 cttgggaacttcctgaagttgagaaatggtgccca 470
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>gb|BT010638.1| Arabidopsis thaliana At1g70760 gene, complete cds
          Length = 576

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 154 cttgggaactttctgaagttgacaaacggtgccca 188
           ||||||||||| |||||||||| ||| ||||||||
Sbjct: 467 cttgggaacttcctgaagttgagaaatggtgccca 433
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>emb|BX817638.1|CNS0AB3Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZC10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 756

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 154 cttgggaactttctgaagttgacaaacggtgccca 188
           ||||||||||| |||||||||| ||| ||||||||
Sbjct: 479 cttgggaacttcctgaagttgagaaatggtgccca 445
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>gb|AC011663.7|AC011663 Arabidopsis thaliana chromosome 1 BAC F5A18 genomic sequence, complete
             sequence
          Length = 108582

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 154   cttgggaactttctgaagttgacaaacggtgccca 188
             ||||||||||| |||||||||| ||| ||||||||
Sbjct: 16498 cttgggaacttcctgaagttgagaaatggtgccca 16532
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>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence,
            complete sequence
          Length = 110514

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 154  cttgggaactttctgaagttgacaaacggtgccca 188
            ||||||||||| |||||||||| ||| ||||||||
Sbjct: 5692 cttgggaacttcctgaagttgagaaatggtgccca 5658
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>gb|AC148053.3| Carollia perspicillata clone 594J14, complete sequence
          Length = 125844

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 19    atctgtatttgttacatatata 40
             ||||||||||||||||||||||
Sbjct: 84334 atctgtatttgttacatatata 84355
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 19      atctgtatttgttacatatata 40
               ||||||||||||||||||||||
Sbjct: 1136552 atctgtatttgttacatatata 1136573
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>emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in linkage group 12,
              complete sequence
          Length = 186937

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 59     acttctctttgaatgagtctatttg 83
              |||||||||||||||||| ||||||
Sbjct: 182227 acttctctttgaatgagtttatttg 182251
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    cggccaccggcggcaggatc 345
              ||||||||||||||||||||
Sbjct: 899482 cggccaccggcggcaggatc 899501
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>ref|NM_192887.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 652 gcggcaagtggccgtggcgc 671
           ||||||||||||||||||||
Sbjct: 702 gcggcaagtggccgtggcgc 721
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>ref|XM_475062.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2811

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 cctcctccccgctcaccgtc 381
           ||||||||||||||||||||
Sbjct: 83  cctcctccccgctcaccgtc 102
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>gb|AC153007.4| Mus musculus BAC clone RP24-266E2 from chromosome 8, complete
            sequence
          Length = 174101

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   tacttctctttgaatgagtc 77
            ||||||||||||||||||||
Sbjct: 2146 tacttctctttgaatgagtc 2127
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>ref|XM_752437.1| Ustilago maydis 521 hypothetical protein (UM01383.1) partial mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 580 ggcagcgaggacgcgacggg 599
           ||||||||||||||||||||
Sbjct: 608 ggcagcgaggacgcgacggg 589
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>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence
          Length = 76169

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   aacgaagaggtagaagaagg 319
             ||||||||||||||||||||
Sbjct: 53488 aacgaagaggtagaagaagg 53507
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tacttctctttgaatgagtc 77
              ||||||||||||||||||||
Sbjct: 168643 tacttctctttgaatgagtc 168624
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>gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome 2, complete sequence
          Length = 233042

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    ggcagaggatcctggacttg 513
              ||||||||||||||||||||
Sbjct: 228557 ggcagaggatcctggacttg 228538
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>gb|AC140307.3| Mus musculus BAC clone RP23-389D15 from chromosome 19, complete sequence
          Length = 187731

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    cggaggccagcttctgcagc 453
              ||||||||||||||||||||
Sbjct: 170514 cggaggccagcttctgcagc 170495
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>ref|XM_538398.2| PREDICTED: Canis familiaris similar to neutrophil cytosolic factor
           4 (40kD) isoform 1 (LOC481277), mRNA
          Length = 1106

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  gtccttgaacagaggggtgc 112
           ||||||||||||||||||||
Sbjct: 893 gtccttgaacagaggggtgc 874
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>gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosome 19, complete
             sequence
          Length = 175245

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   cggaggccagcttctgcagc 453
             ||||||||||||||||||||
Sbjct: 20572 cggaggccagcttctgcagc 20553
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>ref|XM_537004.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
            sub-family A member 3 (LOC479879), mRNA
          Length = 5277

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  ggggagcaacgaagaggtag 312
            ||||||||||||||||||||
Sbjct: 1351 ggggagcaacgaagaggtag 1332
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>gb|AC136717.10| Mus musculus chromosome 7, clone RP23-48C24, complete sequence
          Length = 222854

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 631    gatggcaggcagaggctttg 650
              ||||||||||||||||||||
Sbjct: 137417 gatggcaggcagaggctttg 137398
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     cgatcgcggccaccggcggc 339
               ||||||||||||||||||||
Sbjct: 1402469 cgatcgcggccaccggcggc 1402450
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>emb|AL359252.17| Human DNA sequence from clone RP11-111H14 on chromosome 6 Contains part
             of the UST gene for uronyl-2-sulfotransferase and two CpG
             islands, complete sequence
          Length = 178929

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtgaacatgaactgcagata 236
             ||||||||||||||||||||
Sbjct: 99671 gtgaacatgaactgcagata 99652
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 327     ggccaccggcggcaggatccccag 350
               |||| |||||||||||||||||||
Sbjct: 2237679 ggcccccggcggcaggatccccag 2237702
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 327     ggccaccggcggcaggatccccag 350
               |||| |||||||||||||||||||
Sbjct: 1982343 ggcccccggcggcaggatccccag 1982320
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>gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of the complete genome
          Length = 13332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  aggcgatcgcggccaccggc 336
            ||||||||||||||||||||
Sbjct: 4729 aggcgatcgcggccaccggc 4748
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 652      gcggcaagtggccgtggcgc 671
                ||||||||||||||||||||
Sbjct: 24982457 gcggcaagtggccgtggcgc 24982438
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>gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, complete sequence
          Length = 68883

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   gcgaggacgcgacggggagg 603
             ||||||||||||||||||||
Sbjct: 16495 gcgaggacgcgacggggagg 16476
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>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence
          Length = 201464

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    gcgaggacgcgacggggagg 603
              ||||||||||||||||||||
Sbjct: 174643 gcgaggacgcgacggggagg 174624



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   gcgaggacgcgacggggagg 603
             ||||||||||||||||||||
Sbjct: 83253 gcgaggacgcgacggggagg 83234
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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0006C01
          Length = 153865

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 652   gcggcaagtggccgtggcgc 671
             ||||||||||||||||||||
Sbjct: 54980 gcggcaagtggccgtggcgc 54961
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     gcgatcgcggccaccggcggcagg 342
               ||||||||||||||| ||||||||
Sbjct: 1116622 gcgatcgcggccacccgcggcagg 1116645
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>gb|AC012087.10|AC012087 Homo sapiens 3 BAC RP11-317L10,RP11-150K6,RP11-68D12 (Roswell Park
             Cancer Institute Human BAC Library) complete sequence
          Length = 194635

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    ttccctagaagtacttctctttga 70
             ||||||| ||||||||||||||||
Sbjct: 94327 ttccctacaagtacttctctttga 94304
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 597     ggggaggaagcgccatgagg 616
               ||||||||||||||||||||
Sbjct: 4676904 ggggaggaagcgccatgagg 4676923
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>ref|XM_318428.2| Anopheles gambiae str. PEST ENSANGP00000014841 (ENSANGG00000012352),
            mRNA
          Length = 1141

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 640  cagaggctttgggcggcaag 659
            ||||||||||||||||||||
Sbjct: 1108 cagaggctttgggcggcaag 1089
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>dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B03, full
           insert sequence
          Length = 3336

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 cctcctccccgctcaccgtc 381
           ||||||||||||||||||||
Sbjct: 196 cctcctccccgctcaccgtc 215
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>dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124H21, full
           insert sequence
          Length = 3259

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 cctcctccccgctcaccgtc 381
           ||||||||||||||||||||
Sbjct: 136 cctcctccccgctcaccgtc 155
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>gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete sequence
          Length = 213337

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 260    accacctcagcctcatccagttca 283
              |||||||||||||||||| |||||
Sbjct: 208744 accacctcagcctcatcctgttca 208721
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>emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in linkage group 2,
             complete sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 261   ccacctcagcctcatccagttcat 284
             ||||||||||||||||||| ||||
Sbjct: 38744 ccacctcagcctcatccaggtcat 38767
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>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete
             sequence
          Length = 209917

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    atctgtatttgttacatata 38
             ||||||||||||||||||||
Sbjct: 34517 atctgtatttgttacatata 34498
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>emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on chromosome 2, complete
             sequence
          Length = 217595

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 494   ggcagaggatcctggacttg 513
             ||||||||||||||||||||
Sbjct: 55078 ggcagaggatcctggacttg 55097
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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   cctcctccccgctcaccgtc 381
             ||||||||||||||||||||
Sbjct: 70035 cctcctccccgctcaccgtc 70054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,657,098
Number of Sequences: 3902068
Number of extensions: 5657098
Number of successful extensions: 108189
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107572
Number of HSP's gapped (non-prelim): 616
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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