ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
2dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
3dbj|AK068936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
4gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome... 218 2e-53
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
6dbj|AK102121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
7ref|XM_475987.1| Oryza sativa (japonica cultivar-group), predic... 208 2e-50
8emb|AJ012272.1|MOB012272 Magnolia obovata DNA sequence for micro... 58 4e-05
9gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Can... 44 0.57
10gb|AC161370.3| Mus musculus BAC clone RP23-437J23 from chromosom... 44 0.57
11gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complet... 44 0.57
12gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, comp... 44 0.57
13gb|AC124424.4| Mus musculus BAC clone RP24-230J3 from chromosome... 42 2.3
14emb|AL591594.9| Human DNA sequence from clone RP11-424N15 on chr... 42 2.3
15gb|AC079150.3| Homo sapiens BAC clone RP11-155F11 from 2, comple... 42 2.3
16emb|AL844163.7| Mouse DNA sequence from clone RP23-467L21 on chr... 42 2.3
17gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 9.0
18gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, compl... 40 9.0
19gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 9.0
20gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, comple... 40 9.0
21emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete ... 40 9.0
22dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 9.0
23gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471 40 9.0
24emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in ... 40 9.0
25gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome... 40 9.0
26gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosom... 40 9.0
27dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 9.0
28gb|AC149899.2| Xenopus tropicalis clone ISB-339J14, complete seq... 40 9.0
29emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chr... 40 9.0

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  228 bits (115), Expect = 2e-56
 Identities = 246/289 (85%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                            
Query: 369      agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428
                ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
Sbjct: 22464873 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 22464932

                                                                            
Query: 429      ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488
                |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| |
Sbjct: 22464933 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 22464992

                                                                            
Query: 489      tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545
                | ||||  || ||| | |||||||||||||||||||   ||||||||||||| |||||||
Sbjct: 22464993 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 22465052

                                                                            
Query: 546      tcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcggg 605
                | ||||||||||||| |||| |||  ||||| |  |||||  ||||||| || ||  | |
Sbjct: 22465053 tggcatgcccattggtggcacctgactgccaatgcccagccagcaaaggtttatcatgag 22465112

                                                                 
Query: 606      aaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
                | || |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 22465113 agagtgcttctgcaacacaatgatctgcaatgatcttcctcaggtgctg 22465161



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 304      tagatcctacaagatgttgggcacttg 330
                ||||||||||| |||||||||||||||
Sbjct: 22464808 tagatcctacaggatgttgggcacttg 22464834



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>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016D04
          Length = 147313

 Score =  228 bits (115), Expect = 2e-56
 Identities = 246/289 (85%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                         
Query: 369   agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428
             ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
Sbjct: 35229 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 35288

                                                                         
Query: 429   ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488
             |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| |
Sbjct: 35289 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 35348

                                                                         
Query: 489   tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545
             | ||||  || ||| | |||||||||||||||||||   ||||||||||||| |||||||
Sbjct: 35349 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 35408

                                                                         
Query: 546   tcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcggg 605
             | ||||||||||||| |||| |||  ||||| |  |||||  ||||||| || ||  | |
Sbjct: 35409 tggcatgcccattggtggcacctgactgccaatgcccagccagcaaaggtttatcatgag 35468

                                                              
Query: 606   aaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
             | || |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 35469 agagtgcttctgcaacacaatgatctgcaatgatcttcctcaggtgctg 35517



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 304   tagatcctacaagatgttgggcacttg 330
             ||||||||||| |||||||||||||||
Sbjct: 35164 tagatcctacaggatgttgggcacttg 35190



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>dbj|AK068936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F10, full
            insert sequence
          Length = 1730

 Score =  228 bits (115), Expect = 2e-56
 Identities = 246/289 (85%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 369  agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428
            ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
Sbjct: 1260 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 1201

                                                                        
Query: 429  ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488
            |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| |
Sbjct: 1200 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 1141

                                                                        
Query: 489  tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545
            | ||||  || ||| | |||||||||||||||||||   ||||||||||||| |||||||
Sbjct: 1140 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 1081

                                                                        
Query: 546  tcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcggg 605
            | ||||||||||||| |||| |||  ||||| |  |||||  ||||||| || ||  | |
Sbjct: 1080 tggcatgcccattggtggcacctgactgccaatgcccagccagcaaaggtttatcatgag 1021

                                                             
Query: 606  aaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
            | || |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 1020 agagtgcttctgcaacacaatgatctgcaatgatcttcctcaggtgctg 972



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 304  tagatcctacaagatgttgggcacttg 330
            ||||||||||| |||||||||||||||
Sbjct: 1325 tagatcctacaggatgttgggcacttg 1299



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>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05,
             complete sequence
          Length = 108479

 Score =  218 bits (110), Expect = 2e-53
 Identities = 290/350 (82%)
 Strand = Plus / Plus

                                                                         
Query: 305   agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364
             |||||||||||||||||||| ||||| || |||||| | |||||||  ||||| ||| | 
Sbjct: 61425 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 61484

                                                                         
Query: 365   gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424
                |||||||| | ||||||||||||||||||||| |  ||||| ||||| ||||| || 
Sbjct: 61485 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 61544

                                                                         
Query: 425   acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484
             || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || |||
Sbjct: 61545 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 61604

                                                                         
Query: 485   ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544
             || ||||| | ||| ||| | |||||||||||||||||||  ||||||||||| ||||||
Sbjct: 61605 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 61664

                                                                         
Query: 545   ttcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcgg 604
             || |||||||||||||  ||||||| |||||| | |||||||||||||||||| ||  | 
Sbjct: 61665 ttagcatgcccattggtagcatctgattgccaatgtccagcttgcaaaggcttatcatga 61724

                                                               
Query: 605   gaaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
             || || ||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct: 61725 gagagtgcttccgcaacacaatggtctgcaatgatcttccttagatgctg 61774



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  218 bits (110), Expect = 2e-53
 Identities = 290/350 (82%)
 Strand = Plus / Plus

                                                                            
Query: 305      agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364
                |||||||||||||||||||| ||||| || |||||| | |||||||  ||||| ||| | 
Sbjct: 29051370 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 29051429

                                                                            
Query: 365      gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424
                   |||||||| | ||||||||||||||||||||| |  ||||| ||||| ||||| || 
Sbjct: 29051430 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 29051489

                                                                            
Query: 425      acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484
                || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || |||
Sbjct: 29051490 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 29051549

                                                                            
Query: 485      ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544
                || ||||| | ||| ||| | |||||||||||||||||||  ||||||||||| ||||||
Sbjct: 29051550 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 29051609

                                                                            
Query: 545      ttcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcgg 604
                || |||||||||||||  ||||||| |||||| | |||||||||||||||||| ||  | 
Sbjct: 29051610 ttagcatgcccattggtagcatctgattgccaatgtccagcttgcaaaggcttatcatga 29051669

                                                                  
Query: 605      gaaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
                || || ||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct: 29051670 gagagtgcttccgcaacacaatggtctgcaatgatcttccttagatgctg 29051719



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>dbj|AK102121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084N12, full
            insert sequence
          Length = 1582

 Score =  218 bits (110), Expect = 2e-53
 Identities = 290/350 (82%)
 Strand = Plus / Minus

                                                                        
Query: 305  agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364
            |||||||||||||||||||| ||||| || |||||| | |||||||  ||||| ||| | 
Sbjct: 1278 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 1219

                                                                        
Query: 365  gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424
               |||||||| | ||||||||||||||||||||| |  ||||| ||||| ||||| || 
Sbjct: 1218 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 1159

                                                                        
Query: 425  acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484
            || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || |||
Sbjct: 1158 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 1099

                                                                        
Query: 485  ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544
            || ||||| | ||| ||| | |||||||||||||||||||  ||||||||||| ||||||
Sbjct: 1098 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 1039

                                                                        
Query: 545  ttcgcatgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcgg 604
            || |||||||||||||  ||||||| |||||| | |||||||||||||||||| ||  | 
Sbjct: 1038 ttagcatgcccattggtagcatctgattgccaatgtccagcttgcaaaggcttatcatga 979

                                                              
Query: 605  gaaagcgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
            || || ||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct: 978  gagagtgcttccgcaacacaatggtctgcaatgatcttccttagatgctg 929



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>ref|XM_475987.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score =  208 bits (105), Expect = 2e-50
 Identities = 285/345 (82%)
 Strand = Plus / Minus

                                                                        
Query: 310  ctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatccttgagca 369
            ||||||||||||||| ||||| || |||||| | |||||||  ||||| ||| |    ||
Sbjct: 1023 ctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttcccaca 964

                                                                        
Query: 370  gagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacctc 429
            |||||| | ||||||||||||||||||||| |  ||||| ||||| ||||| || || ||
Sbjct: 963  gagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaataacttc 904

                                                                        
Query: 430  cttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctctt 489
            |||||| || | |||||| | ||||||||| |||||| | ||| |||| || ||||| ||
Sbjct: 903  cttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttcctttt 844

                                                                        
Query: 490  ctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagccattcgc 549
            ||| | ||| ||| | |||||||||||||||||||  ||||||||||| |||||||| ||
Sbjct: 843  ctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagccattagc 784

                                                                        
Query: 550  atgcccattggcggcatctggttgccagtttccagcttgcaaaggcttgtcgcgggaaag 609
            |||||||||||  ||||||| |||||| | |||||||||||||||||| ||  | || ||
Sbjct: 783  atgcccattggtagcatctgattgccaatgtccagcttgcaaaggcttatcatgagagag 724

                                                         
Query: 610  cgcttctgccacacaatgatctgcgatgatcttccttagctgctg 654
             ||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct: 723  tgcttccgcaacacaatggtctgcaatgatcttccttagatgctg 679



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>emb|AJ012272.1|MOB012272 Magnolia obovata DNA sequence for microsatellite M10D8
          Length = 459

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 agctctctcatccttgagcagagctccaccttctgctccttgtagctctggagtaggaag 409
           |||||| ||||| ||||||| |||||||  |||||||||||||||||| | || || || 
Sbjct: 253 agctctgtcatctttgagcacagctccatattctgctccttgtagctccgtagcagaaac 312

                                    
Query: 410 tccttcccttctatcacctccttca 434
           |||||| |||| | | |||||||||
Sbjct: 313 tccttcgcttcgaccgcctccttca 337



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>gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170088

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 340   cctctcttgcagctctctcatc 361
             ||||||||||||||||||||||
Sbjct: 89877 cctctcttgcagctctctcatc 89856



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>gb|AC161370.3| Mus musculus BAC clone RP23-437J23 from chromosome 9, complete sequence
          Length = 187354

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 116    aactggggaaaaaaacctaagc 137
              ||||||||||||||||||||||
Sbjct: 141198 aactggggaaaaaaacctaagc 141177



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>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence
          Length = 164706

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 442    gacctctctcttgagcatctcc 463
              ||||||||||||||||||||||
Sbjct: 161215 gacctctctcttgagcatctcc 161236



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>gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, complete sequence
          Length = 160487

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 340    cctctcttgcagctctctcatc 361
              ||||||||||||||||||||||
Sbjct: 140170 cctctcttgcagctctctcatc 140149



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>gb|AC124424.4| Mus musculus BAC clone RP24-230J3 from chromosome 2, complete sequence
          Length = 190802

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 442   gacctctctcttgagcatctc 462
             |||||||||||||||||||||
Sbjct: 83380 gacctctctcttgagcatctc 83400



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>emb|AL591594.9| Human DNA sequence from clone RP11-424N15 on chromosome 1 Contains the
             5' end of the ADSS gene for adenylosuccinate synthase, the
             5' end of the gene for a novel protein (DKFZp686A0738,
             FLJ23552) and two CpG islands, complete sequence
          Length = 152313

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 573   gccagtttccagcttgcaaaggctt 597
             ||||||||| |||||||||||||||
Sbjct: 35343 gccagtttcaagcttgcaaaggctt 35319



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>gb|AC079150.3| Homo sapiens BAC clone RP11-155F11 from 2, complete sequence
          Length = 174782

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 573   gccagtttccagcttgcaaaggctt 597
             ||||||||| |||||||||||||||
Sbjct: 54987 gccagtttcaagcttgcaaaggctt 54963



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>emb|AL844163.7| Mouse DNA sequence from clone RP23-467L21 on chromosome 2, complete
              sequence
          Length = 165671

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 442    gacctctctcttgagcatctc 462
              |||||||||||||||||||||
Sbjct: 138239 gacctctctcttgagcatctc 138219



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     tacatccgcctgcgccttgt 288
               ||||||||||||||||||||
Sbjct: 2207157 tacatccgcctgcgccttgt 2207176



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>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence
          Length = 221821

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gaaatattttcctgtgaatc 252
              ||||||||||||||||||||
Sbjct: 136128 gaaatattttcctgtgaatc 136109



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 238     attttcctgtgaatcccttgacaa 261
               |||||||||| |||||||||||||
Sbjct: 5508718 attttcctgttaatcccttgacaa 5508741



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>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence
          Length = 118035

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gaaatattttcctgtgaatc 252
             ||||||||||||||||||||
Sbjct: 65972 gaaatattttcctgtgaatc 65953



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>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 491    tcgacaccgatacagtgcag 510
              ||||||||||||||||||||
Sbjct: 312928 tcgacaccgatacagtgcag 312909



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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 565     atctggttgccagtttccag 584
               ||||||||||||||||||||
Sbjct: 1327523 atctggttgccagtttccag 1327542



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>gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471
          Length = 36241

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   tcgacaccgatacagtgcag 510
             ||||||||||||||||||||
Sbjct: 32214 tcgacaccgatacagtgcag 32233



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>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8, complete
              sequence
          Length = 187161

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 194    tcaatgtaaacattctgcaaagac 217
              |||||||||||| |||||||||||
Sbjct: 178153 tcaatgtaaacaatctgcaaagac 178130



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>gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome 16, complete sequence
          Length = 178958

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   agcaactggggaaaaaaacctaag 136
             |||||||||||||||||| |||||
Sbjct: 15286 agcaactggggaaaaaaagctaag 15309



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>gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosome 7, complete sequence
          Length = 181146

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gaaatattttcctgtgaatc 252
             ||||||||||||||||||||
Sbjct: 99132 gaaatattttcctgtgaatc 99113



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 238     attttcctgtgaatcccttgacaa 261
               |||||||||| |||||||||||||
Sbjct: 1339991 attttcctgttaatcccttgacaa 1340014



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>gb|AC149899.2| Xenopus tropicalis clone ISB-339J14, complete sequence
          Length = 82063

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 341   ctctcttgcagctctctcatcctt 364
             ||||||||||||||||||| ||||
Sbjct: 78396 ctctcttgcagctctctcagcctt 78419



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>emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chromosome 2, complete
             sequence
          Length = 187667

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aatcaatgtaaacattctgc 211
             ||||||||||||||||||||
Sbjct: 55245 aatcaatgtaaacattctgc 55226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,804,565
Number of Sequences: 3902068
Number of extensions: 4804565
Number of successful extensions: 82460
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82295
Number of HSP's gapped (non-prelim): 155
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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