ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27c17 |
|---|---|
| Clone Library Name | barley_pub |
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 87.4 bits (215), Expect = 3e-17 Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = -3 Query: 565 AMESPKGP-SRCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXAN 389 A E PK +RC CRK+VGLTGF CRCGNL C HRYSDKH C +DY+ N Sbjct: 143 APELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKEN 202 Query: 388 PVVKAEKLDKI 356 PVV AEK+ +I Sbjct: 203 PVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 87.4 bits (215), Expect = 3e-17 Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = -3 Query: 565 AMESPKGP-SRCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXAN 389 A E PK +RC CRK+VGLTGF CRCGNL C HRYSDKH C +DY+ N Sbjct: 143 APELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKEN 202 Query: 388 PVVKAEKLDKI 356 PVV AEK+ +I Sbjct: 203 PVVVAEKIQRI 213
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 84.0 bits (206), Expect = 3e-16 Identities = 34/59 (57%), Positives = 41/59 (69%) Frame = -3 Query: 541 SRCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVVKAEKL 365 +RCS CRKRVGLTGF CRCG+L C HRYSD+H C +DY+ NPVV+A K+ Sbjct: 103 NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 84.0 bits (206), Expect = 3e-16 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Frame = -3 Query: 562 MESPKGPS-RCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANP 386 ++ PK + RC +C K+VG+TGF CRCG+ C THRY + HEC+FD++ ANP Sbjct: 99 LDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANP 158 Query: 385 VVKAEKLDKI 356 VVKA+K+D+I Sbjct: 159 VVKADKVDRI 168
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 81.6 bits (200), Expect = 1e-15 Identities = 35/66 (53%), Positives = 43/66 (65%) Frame = -3 Query: 553 PKGPSRCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVVKA 374 P+ P+RC+ CRKRVGLTGF CRCG C +HRY + H C FD++ ANP+V A Sbjct: 96 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIA 155 Query: 373 EKLDKI 356 KL KI Sbjct: 156 AKLQKI 161
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 75.9 bits (185), Expect = 8e-14 Identities = 29/62 (46%), Positives = 43/62 (69%) Frame = -3 Query: 541 SRCSTCRKRVGLTGFXCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVVKAEKLD 362 +RC +C K+VG+ GF C+CG+ C +HRY +KHEC FD++ ANP+VKA+K+ Sbjct: 114 NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173 Query: 361 KI 356 +I Sbjct: 174 RI 175
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = -3 Query: 550 KGPSRCSTCRKRVGLTGF---XCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVV 380 K RC C+ ++ L CRCG + C HR ++H+C FD+ ++ Sbjct: 152 KSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDH-----MGRGREEAIM 206 Query: 379 KAEKLDKI*ERVGKT 335 K KLD+ +VG++ Sbjct: 207 KMVKLDR---KVGRS 218
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = -3 Query: 550 KGPSRCSTCRKRVGLTGF---XCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVV 380 K RC C+ ++ L CRCG + C HR ++H+C FD+ ++ Sbjct: 152 KSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDH-----MGRGREEAIM 206 Query: 379 KAEKLDKI*ERVGKT 335 K KLD+ +VG++ Sbjct: 207 KMVKLDR---KVGRS 218
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = -3 Query: 550 KGPSRCSTCRKRVGLTGF---XCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVV 380 K RC C+ ++ L CRCG + C HR ++H+C FD+ ++ Sbjct: 152 KSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDH-----MGRGREEAIM 206 Query: 379 KAEKLDKI*ERVGKT 335 K KLD+ +VG++ Sbjct: 207 KMVKLDR---KVGRS 218
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 38.1 bits (87), Expect = 0.017 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = -3 Query: 550 KGPSRCSTCRKRVGLTGF---XCRCGNLXCATHRYSDKHECKFDYRXXXXXXXXXANPVV 380 K RC C+ ++ L CRCG + C HR ++H+C FD+ ++ Sbjct: 151 KSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDH-----MGRGREEAIM 205 Query: 379 KAEKLDKI*ERVGKT 335 K KLD+ +VG++ Sbjct: 206 KMVKLDR---KVGRS 217
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 35.0 bits (79), Expect = 0.15 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 303 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASXAAPGPNG 187 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 35.0 bits (79), Expect = 0.15 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 303 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASXAAPGPNG 187 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 35.0 bits (79), Expect = 0.15 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 303 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASXAAPGPNG 187 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 303 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASXAAPGPNG 187 S C+ A L F+H+G C L C A+V + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMHNPEG 288
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 303 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASXAAPGPNG 187 S C+ A L F+H+G C L C A++ + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNTDTFESMLNPEG 288
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 327 PKSICATSSSCVFAALSFHHAGFCN 253 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 29.3 bits (64), Expect = 8.1 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = +2 Query: 98 PKCESHNTITVPPRRETTINKAYTT*PTRRPFGPGAAXE 214 P+CE T PPR ETT K TT PT R P E Sbjct: 50 PRCE-----TEPPRCETTTPKCETTPPTCRTEPPTCKTE 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,770,843 Number of Sequences: 219361 Number of extensions: 1158322 Number of successful extensions: 2970 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2969 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
