ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27c16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478942.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctga 293 ||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct: 992 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctga 943
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctga 293 ||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct: 23935931 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctga 23935882
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctga 293 ||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct: 90858 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctga 90809
>dbj|AK103183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121K01, full insert sequence Length = 1424 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctga 293 ||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct: 992 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctga 943
>dbj|AK070635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058H18, full insert sequence Length = 1623 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctga 293 ||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct: 1278 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctga 1229
>gb|AC113416.2| Homo sapiens chromosome 5 clone RP11-560F8, complete sequence Length = 190848 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 233 gctggcgtagcctcagtagtaaatggaga 261 |||||| |||||||||||||||||||||| Sbjct: 10833 gctggcatagcctcagtagtaaatggaga 10861
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 233 gctggcgtagcctcagtagtaaatggaga 261 |||||| |||||||||||||||||||||| Sbjct: 31732 gctggcatagcctcagtagtaaatggaga 31704
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gttgagattttgttttagatg 21 ||||||||||||||||||||| Sbjct: 7179799 gttgagattttgttttagatg 7179819
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gttgagattttgttttagatg 21 ||||||||||||||||||||| Sbjct: 74447 gttgagattttgttttagatg 74467
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 6 gattttgttttagatgaaacgcacagat 33 ||||||||||||||||||| ||| |||| Sbjct: 237402 gattttgttttagatgaaatgcaaagat 237375
>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE Length = 132108 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gagagggtgcggtgatgaga 277 |||||||||||||||||||| Sbjct: 60366 gagagggtgcggtgatgaga 60385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,653,862 Number of Sequences: 3902068 Number of extensions: 2653862 Number of successful extensions: 49541 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49497 Number of HSP's gapped (non-prelim): 44 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
