ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor 28 6.5
2ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.... 28 8.5

>FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor|
          Length = 94

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 56  NTTPALLCSAVCPAADPSRAHCTCLFFSSRPPCFCAWN 169
           N+    + +  CPA      +  C  F S PPC C  N
Sbjct: 54  NSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDIN 91



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>ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2967

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  LTLHTEXXYNTTPALLCSAVCPAADPS 109
           +TL+T       PALLCS V P   P+
Sbjct: 204 VTLNTSSLVQIIPALLCSTVSPIVPPT 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,778,415
Number of Sequences: 219361
Number of extensions: 477095
Number of successful extensions: 1192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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