ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27c08 |
|---|---|
| Clone Library Name | barley_pub |
>STALP_MOUSE (Q76N33) AMSH-like protease (EC 3.1.2.15) (AMSH-LP) (STAM-binding| protein-like 1) (AMSH family protein) (AMSH-FP) Length = 436 Score = 135 bits (339), Expect = 2e-31 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 1/139 (0%) Frame = -1 Query: 694 FHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHY 515 F ++ +++PKQ + D C+ N EELF VQD+ L TLGWIHTHPTQ+ FLSS+DLH H Sbjct: 306 FTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIHTHPTQTAFLSSVDLHTHC 365 Query: 514 SYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPH-KAPLDGSPIYE 338 SYQ+MLPEAIAIV +P K GIF LT+ G + V C ++GFHPH K P ++ Sbjct: 366 SYQLMLPEAIAIVCSP--KHKDTGIFRLTNAGMLEV-STCKKKGFHPHTKDP----KLFS 418 Query: 337 HCSHVYMNADAKFDMIDLR 281 CSHV + D K ++DLR Sbjct: 419 ICSHVLVK-DIKTTVLDLR 436
>STABP_HUMAN (O95630) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 134 bits (336), Expect = 3e-31 Identities = 70/141 (49%), Positives = 92/141 (65%) Frame = -1 Query: 703 RELFHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLH 524 R F ++ ++IPKQ + SD C NEEELF +QD+ L TLGWIHTHPTQ+ FLSS+DLH Sbjct: 291 RNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLH 350 Query: 523 NHYSYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPHKAPLDGSPI 344 H SYQ+MLPE++AIV +P ++ G F LTD G+ I C ++GFHPH P+ Sbjct: 351 THCSYQMMLPESVAIVCSP--KFQETGFFKLTD-HGLEEISSCRQKGFHPHS---KDPPL 404 Query: 343 YEHCSHVYMNADAKFDMIDLR 281 + CSHV + D + DLR Sbjct: 405 FCSCSHVTV-VDRAVTITDLR 424
>STALP_HUMAN (Q96FJ0) AMSH-like protease (EC 3.1.2.15) (AMSH-LP) (STAM-binding| protein-like 1) Length = 436 Score = 133 bits (334), Expect = 6e-31 Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 1/139 (0%) Frame = -1 Query: 694 FHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHY 515 F ++ +I+PKQ + D C+ N EELF VQD+ L TLGWIHTHPTQ+ FLSS+DLH H Sbjct: 306 FTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHC 365 Query: 514 SYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPH-KAPLDGSPIYE 338 SYQ+MLPEAIAIV +P K GIF LT+ G + V C ++GFHPH K P ++ Sbjct: 366 SYQLMLPEAIAIVCSP--KHKDTGIFRLTNAGMLEV-SACKKKGFHPHTKEP----RLFS 418 Query: 337 HCSHVYMNADAKFDMIDLR 281 C HV + D K ++DLR Sbjct: 419 ICKHVLVK-DIKIIVLDLR 436
>STABP_BRARE (Q6TH47) STAM-binding protein-like (EC 3.1.2.15)| Length = 418 Score = 130 bits (328), Expect = 3e-30 Identities = 71/141 (50%), Positives = 91/141 (64%) Frame = -1 Query: 703 RELFHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLH 524 + F V+ +I+PKQ D C+ NEEELF +QD+ L TLGWIHTHPTQ+ FLSS+DLH Sbjct: 285 KNAFTVTHVIVPKQCGGPDYCDTENEEELFLIQDQNDLITLGWIHTHPTQTAFLSSVDLH 344 Query: 523 NHYSYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPHKAPLDGSPI 344 H SYQ+MLPE+IAIV +P + G F LTD G+ + C +RGFHPH P D P+ Sbjct: 345 THCSYQMMLPESIAIVCSP--KFNETGYFRLTD-YGMDDVGTCKQRGFHPH--PKD-PPL 398 Query: 343 YEHCSHVYMNADAKFDMIDLR 281 + HV + D M+DLR Sbjct: 399 FAASHHVSI-TDGSVTMLDLR 418
>STALP_PONPY (Q5R558) AMSH-like protease (EC 3.1.2.15) (AMSH-LP) (STAM-binding| protein-like 1) Length = 436 Score = 130 bits (327), Expect = 4e-30 Identities = 71/139 (51%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Frame = -1 Query: 694 FHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHY 515 F ++ +I+PKQ + D C+ N EELF VQD+ L TLGWIHTHPTQ+ FLSS+DLH H Sbjct: 306 FTITHVIVPKQSAGPDYCDVENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHC 365 Query: 514 SYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPH-KAPLDGSPIYE 338 SYQ+ML EAIAIV +P K GIF LT+ G + V C ++GFHPH K P ++ Sbjct: 366 SYQLMLSEAIAIVCSP--KHKDTGIFRLTNAGMLEV-SACKKKGFHPHTKEP----RLFS 418 Query: 337 HCSHVYMNADAKFDMIDLR 281 C HV + D K ++DLR Sbjct: 419 ICKHVLVK-DIKIIVLDLR 436
>STABP_XENLA (Q63ZM7) STAM-binding protein-like (EC 3.1.2.15)| Length = 416 Score = 125 bits (315), Expect = 1e-28 Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Frame = -1 Query: 694 FHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHY 515 F V+ +I+PKQ D C +EEELF +QD+ L TLGWIHTHPTQ+ FLSS+DLH H Sbjct: 286 FTVTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHC 345 Query: 514 SYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPH-KAPLDGSPIYE 338 SYQ+MLPE+IAIV +P ++ G F LTD G+ I +C ++GFHPH K P P++ Sbjct: 346 SYQMMLPESIAIVCSP--KFQETGFFKLTD-YGMKEIGECRQKGFHPHCKEP----PLFS 398 Query: 337 HCSHVYMNADAKFDMIDLR 281 HV + + M+DLR Sbjct: 399 AGGHVSV-TEQDVTMMDLR 416
>STABP_RAT (Q8R424) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 125 bits (314), Expect = 1e-28 Identities = 68/141 (48%), Positives = 89/141 (63%) Frame = -1 Query: 703 RELFHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLH 524 R F ++ ++IP+Q D C NEEE+F +QD L TLGWIHTHPTQ+ FLSS+DLH Sbjct: 291 RNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLH 350 Query: 523 NHYSYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPHKAPLDGSPI 344 H SYQ+MLPE+IAIV +P ++ G F LTD G+ I C ++GFHPH P+ Sbjct: 351 THCSYQMMLPESIAIVCSP--KFQETGFFKLTD-YGLQEISTCRQKGFHPHGR---DPPL 404 Query: 343 YEHCSHVYMNADAKFDMIDLR 281 + CSHV + D + DLR Sbjct: 405 FCDCSHVTVK-DRIVTITDLR 424
>STABP_MOUSE (Q9CQ26) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 125 bits (314), Expect = 1e-28 Identities = 68/141 (48%), Positives = 89/141 (63%) Frame = -1 Query: 703 RELFHVSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLH 524 R F ++ ++IP+Q D C NEEE+F +QD L TLGWIHTHPTQ+ FLSS+DLH Sbjct: 291 RNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLH 350 Query: 523 NHYSYQVMLPEAIAIVMAPTDTRKKHGIFHLTDPGGISVIHDCPERGFHPHKAPLDGSPI 344 H SYQ+MLPE+IAIV +P ++ G F LTD G+ I C ++GFHPH P+ Sbjct: 351 THCSYQMMLPESIAIVCSP--KFQETGFFKLTD-YGLQEISTCRQKGFHPHGR---DPPL 404 Query: 343 YEHCSHVYMNADAKFDMIDLR 281 + CSHV + D + DLR Sbjct: 405 FCDCSHVTVK-DRIVTITDLR 424
>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)| Length = 308 Score = 48.1 bits (113), Expect = 3e-05 Identities = 22/71 (30%), Positives = 38/71 (53%) Frame = -1 Query: 664 QKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAI 485 QK+ D + T E+ +GW H+HP C+LSS+D++ S++ + P A+ Sbjct: 91 QKNMMDMLKQTGRPEM----------VVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAV 140 Query: 484 AIVMAPTDTRK 452 A+V+ P + K Sbjct: 141 AVVVDPIQSVK 151
>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III| Length = 319 Score = 46.6 bits (109), Expect = 7e-05 Identities = 17/44 (38%), Positives = 30/44 (68%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LSS+D++ S++ + P A+A+V+ P + K Sbjct: 107 VGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK 150
>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)| Length = 306 Score = 44.3 bits (103), Expect = 4e-04 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRKKHGI---FHLTDPGGI 413 +GW H+HP C+LSS+D++ S++ + A+A+V+ P + K + F L D G + Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGAL 164
>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11| Length = 306 Score = 43.9 bits (102), Expect = 5e-04 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRKKHGI---FHLTDPGGI 413 +GW H+HP C+LSS+D++ S++ + A+A+V+ P + K + F L D G + Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGAL 164
>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome regulatory complex subunit p37B) (Yippee-interacting protein 5) Length = 308 Score = 42.7 bits (99), Expect = 0.001 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LS +D++ S++ + A+A+V+ P + K Sbjct: 107 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 150
>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 312 Score = 42.7 bits (99), Expect = 0.001 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LS +D++ S++ + A+A+V+ P + K Sbjct: 111 VGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK 154
>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (MAD1) Length = 310 Score = 42.7 bits (99), Expect = 0.001 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LS +D++ S++ + A+A+V+ P + K Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 152
>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome-associated PAD1 homolog 1) Length = 310 Score = 42.7 bits (99), Expect = 0.001 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LS +D++ S++ + A+A+V+ P + K Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 152
>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 308 Score = 42.4 bits (98), Expect = 0.001 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LS +D++ S++ + A+A+V+ P + K Sbjct: 108 VGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK 151
>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11| Length = 311 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/44 (36%), Positives = 28/44 (63%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRK 452 +GW H+HP C+LSS+D+ S++ + A+A+V+ P + K Sbjct: 110 VGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVK 153
>CSN5_USTMA (Q4P804) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 406 Score = 38.9 bits (89), Expect = 0.015 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Frame = -1 Query: 703 RELFHVSTLIIPKQKSTSDSCEATNEEELFEVQ------DKGSLFTL-GWIHTHPTQSCF 545 R L+ + + +P + T A NE + VQ + G L + GW H+HP C+ Sbjct: 96 RTLYVMDSFALPVE-GTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCW 154 Query: 544 LSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 LS ID++ + Q +AIV+ P T Sbjct: 155 LSGIDVNTQRTNQQFQDPFVAIVIDPNRT 183
>CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus-interacting protein 2) Length = 333 Score = 38.1 bits (87), Expect = 0.026 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 133 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRT 174
>CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) Length = 333 Score = 38.1 bits (87), Expect = 0.026 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 133 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRT 174
>CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) Length = 334 Score = 38.1 bits (87), Expect = 0.026 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 134 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRT 175
>CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) Length = 334 Score = 38.1 bits (87), Expect = 0.026 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 132 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRT 173
>CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) Length = 332 Score = 38.1 bits (87), Expect = 0.026 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 132 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRT 173
>CSN5_YARLI (Q6C703) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 354 Score = 37.7 bits (86), Expect = 0.034 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ + Q +A+V+ P T Sbjct: 135 VGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRT 176
>CSN5_CRYNE (Q5KAB0) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 371 Score = 37.4 bits (85), Expect = 0.045 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = -1 Query: 601 KGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 KG L GW H+HP C+LS ID++ + Q +A+V+ P T Sbjct: 125 KGELLR-GWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRT 171
>CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4.-.-)| (Signalosome subunit 5b) (Jun activation domain-binding homolog 1) Length = 357 Score = 37.0 bits (84), Expect = 0.058 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 138 VGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRT 179
>CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) (Dch5) (JAB1 homolog) Length = 327 Score = 36.6 bits (83), Expect = 0.076 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +AIV+ P T Sbjct: 131 VGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRT 172
>CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 299 Score = 36.2 bits (82), Expect = 0.099 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAP 467 +GW H+HP C+LS +D+ Q +A+V+ P Sbjct: 114 IGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDP 152
>CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4.-.-)| (Signalosome subunit 5a) (Jun activation domain-binding homolog 2) Length = 358 Score = 36.2 bits (82), Expect = 0.099 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ PT T Sbjct: 138 VGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRT 179
>CSN5_CANGA (Q6FT36) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 465 Score = 35.8 bits (81), Expect = 0.13 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -1 Query: 607 QDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAP 467 +++ +L +GW H+HP C+LS+ID+ Q +AIV+ P Sbjct: 150 RNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDP 196
>CSN5_CANAL (Q59PG6) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 213 Score = 35.8 bits (81), Expect = 0.13 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRKK 449 +GW H HP C+L ID+ Q + +AIV+ P T K+ Sbjct: 157 VGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQ 201
>CSN5_YEAST (Q12468) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 455 Score = 35.8 bits (81), Expect = 0.13 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1 Query: 592 LFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAP 467 L +GW H+HP C+LS+ID+ Q +AIV+ P Sbjct: 172 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDP 213
>CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 340 Score = 35.4 bits (80), Expect = 0.17 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ P T Sbjct: 131 VGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPDRT 172
>CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 336 Score = 35.0 bits (79), Expect = 0.22 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +A+V+ P T Sbjct: 123 IGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRT 164
>CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) (JAB1 homolog) Length = 368 Score = 35.0 bits (79), Expect = 0.22 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +AIV+ P T Sbjct: 135 VGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRT 176
>CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 373 Score = 34.7 bits (78), Expect = 0.29 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAP 467 +GW H+HP C+LS+ID+ Q +AIV+ P Sbjct: 143 VGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDP 181
>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 469 Score = 34.7 bits (78), Expect = 0.29 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q +AIV+ P T Sbjct: 142 VGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKT 183
>CSN5_EMENI (Q5BBF1) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 335 Score = 34.3 bits (77), Expect = 0.38 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q+ P +A+V+ P T Sbjct: 130 VGWYHSHPGYGCWLSGIDVSTQDMQQMSGP-FVAVVIDPERT 170
>CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 420 Score = 33.9 bits (76), Expect = 0.49 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -1 Query: 592 LFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAP 467 L +GW H+HP C+LS ID Q +AIV+ P Sbjct: 147 LAIVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDP 188
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 33.5 bits (75), Expect = 0.64 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Frame = +1 Query: 91 QFPQTYQRSLTPHISIHAI*LCTIT*ISIHNSSLHEKIQGSNLFNCRKYSRQTMTTKLI- 267 QF Y S + HIS +++ + S H + GSN F+ + +Q T ++ Sbjct: 269 QFSSHYSFS-SNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSFSPHRGIKQESTQHILN 327 Query: 268 PLTVLGGQSYQTLHQHSCTRGSNARRLVSHPRGLYVDGILSP 393 P T L ++Q LH SHP+G Y + LSP Sbjct: 328 PNTSLNSNNFQILHS-------------SHPQGNYSNSKLSP 356
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 33.5 bits (75), Expect = 0.64 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Frame = -1 Query: 688 VSTLIIPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYS- 512 + T+++ Q S + +N ++ ++ D L LGWIHT + F+++ ++ H Sbjct: 2221 IKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKL 2280 Query: 511 YQVMLPEAIAIVMAPTDTRKKHGIFHLTDPG 419 + + I I + T ++LTD G Sbjct: 2281 FADKKRDCIDISIFSTPGSVSLSAYNLTDEG 2311
>CSN5_ASPFU (Q4WZP2) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 334 Score = 33.1 bits (74), Expect = 0.84 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 583 LGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT 458 +GW H+HP C+LS ID+ Q+ P +A+V+ P T Sbjct: 130 VGWYHSHPGYGCWLSGIDVTTQDMQQLGGP-FVAVVIDPERT 170
>CG11_CANAL (P24866) G1/S-specific cyclin CLN1| Length = 646 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -1 Query: 673 IPKQKSTSDSCEATNEEELFEVQDKGSLFTLGWIHTHPT-QSCFLSSIDLHN 521 +P K + C +EE+F + L TL W HPT + C +ID +N Sbjct: 141 VPTLKELTIMCRNAYDEEMFVQMEMHILSTLDWSIGHPTLEDCLQLAIDSNN 192
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 31.6 bits (70), Expect = 2.4 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Frame = +1 Query: 91 QFPQTYQRSLTPHISIHAI*LCTIT*ISIHNSSLHEKIQGSNLFNCRKYSRQTMTTKLI- 267 QFP Y S + H+S ++ + H + GSN F+ + +Q T L+ Sbjct: 267 QFPSHYSFS-SGHVSPSSLLQSSAGLAPGHTNQALSDFAGSNSFSPHRGMKQEPTQHLLN 325 Query: 268 PLTVLGGQSYQTLHQHSCTRGSNARRLVSHPRGLYVDGILSP 393 P L ++Q LH SHP+G Y + LSP Sbjct: 326 PTPSLNSNNFQILHS-------------SHPQGNYSNSKLSP 354
>BRCC3_HUMAN (P46736) BRCA1/BRCA2-containing complex subunit 3| Length = 316 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -1 Query: 646 SCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVM 500 S +T E L E+ + + +GW H+HP + + S +D+ YQ+M Sbjct: 98 SAASTEAERLAELTGR-PMRVVGWYHSHPHITVWPSHVDVRTQAMYQMM 145
>BRCC3_MOUSE (P46737) BRCA1/BRCA2-containing complex subunit 3| Length = 291 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -1 Query: 646 SCEATNEEELFEVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVM 500 S +T E L E+ + + +GW H+HP + + S +D+ YQ+M Sbjct: 98 SAASTEAERLAELTGR-PMRVVGWYHSHPHITVWPSHVDVRTQAMYQMM 145
>ITAL_MOUSE (P24063) Integrin alpha-L precursor (Leukocyte adhesion| glycoprotein LFA-1 alpha chain) (LFA-1A) (Leukocyte function-associated molecule 1 alpha chain) (Lymphocyte antigen Ly-15) (CD11a antigen) Length = 1163 Score = 30.0 bits (66), Expect = 7.1 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 592 LFTLGW---IHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRKKHGIFH 434 LF W + T PTQS FL+ H+ YQV+ E +V AP + G++H Sbjct: 17 LFAKAWSYNLDTRPTQS-FLAQAG--RHFGYQVLQIEDGVVVGAPGEGDNTGGLYH 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,839,412 Number of Sequences: 219361 Number of extensions: 2000265 Number of successful extensions: 4498 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 4382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4490 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
